Wall clock time and date at job start Tue Mar 31 2020 20:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47190 * 270.00046 * 3 2 1 5 5 H 1.48499 * 109.47178 * 30.00112 * 3 2 1 6 6 H 1.48506 * 109.47311 * 150.00111 * 3 2 1 7 7 C 1.38815 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00326 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99569 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99628 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46888 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47080 * 304.99854 * 11 10 9 13 13 C 1.52995 * 109.47138 * 65.00602 * 11 10 9 14 14 C 1.53003 * 109.47138 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47110 * 299.99748 * 14 13 11 16 16 C 1.53000 * 109.47444 * 59.99763 * 15 14 13 17 17 C 1.53003 * 109.47161 * 300.00206 * 16 15 14 18 18 H 1.08994 * 109.47080 * 300.00087 * 17 16 15 19 19 N 1.46501 * 109.47222 * 179.97438 * 17 16 15 20 20 C 1.34766 * 119.99924 * 84.99888 * 19 17 16 21 21 O 1.21283 * 120.00498 * 0.02562 * 20 19 17 22 22 C 1.50698 * 120.00317 * 179.97438 * 20 19 17 23 23 O 1.42893 * 109.47649 * 180.02562 * 22 20 19 24 24 C 1.42906 * 114.00470 * 180.02562 * 23 22 20 25 25 C 1.52997 * 109.47321 * 210.00190 * 24 23 22 26 26 C 1.53002 * 109.46817 * 180.02562 * 25 24 23 27 27 C 1.53000 * 109.47233 * 60.00194 * 26 25 24 28 28 C 1.52997 * 109.47060 * 299.99657 * 27 26 25 29 29 C 1.52999 * 109.47317 * 59.99960 * 28 27 26 30 30 H 0.96996 * 119.99874 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00439 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.46999 * 60.00561 * 10 9 7 33 33 H 1.08995 * 109.47351 * 300.00374 * 10 9 7 34 34 H 1.09002 * 109.46657 * 299.99548 * 13 11 10 35 35 H 1.08994 * 109.47746 * 59.99659 * 13 11 10 36 36 H 1.09007 * 109.46971 * 59.99920 * 14 13 11 37 37 H 1.08998 * 109.47341 * 179.97438 * 14 13 11 38 38 H 1.08999 * 109.47728 * 180.02562 * 15 14 13 39 39 H 1.09002 * 109.47032 * 300.00303 * 15 14 13 40 40 H 1.08995 * 109.47548 * 180.02562 * 16 15 14 41 41 H 1.09007 * 109.46703 * 59.99788 * 16 15 14 42 42 H 0.97006 * 120.00169 * 265.00027 * 19 17 16 43 43 H 1.09006 * 109.47023 * 60.00052 * 22 20 19 44 44 H 1.09001 * 109.47448 * 300.00574 * 22 20 19 45 45 H 1.09002 * 109.46842 * 330.00179 * 24 23 22 46 46 H 1.08993 * 109.47194 * 59.99510 * 25 24 23 47 47 H 1.09002 * 109.46695 * 299.99523 * 25 24 23 48 48 H 1.08992 * 109.47063 * 299.99823 * 26 25 24 49 49 H 1.09004 * 109.46733 * 179.97438 * 26 25 24 50 50 H 1.09002 * 109.47398 * 59.99826 * 27 26 25 51 51 H 1.09001 * 109.47194 * 180.02562 * 27 26 25 52 52 H 1.08996 * 109.47853 * 180.02562 * 28 27 26 53 53 H 1.09002 * 109.47153 * 300.00319 * 28 27 26 54 54 H 1.09000 * 109.47486 * 180.02562 * 29 28 27 55 55 H 1.09002 * 109.46716 * 60.00091 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 1 0.3801 -4.7134 0.8401 13 6 0.2686 -4.8104 -1.3091 14 6 -0.7261 -5.9729 -1.3092 15 6 0.0342 -7.2947 -1.1843 16 6 0.8295 -7.3041 0.1227 17 6 1.8242 -6.1415 0.1228 18 1 2.5079 -6.2483 -0.7193 19 7 2.5853 -6.1502 1.3746 20 6 3.6845 -6.9214 1.4895 21 8 4.0440 -7.6079 0.5566 22 6 4.4678 -6.9299 2.7769 23 8 5.5803 -7.8179 2.6519 24 6 6.3929 -7.9005 3.8245 25 6 7.8378 -8.2040 3.4234 26 6 8.7076 -8.2931 4.6790 27 6 8.1841 -9.4103 5.5839 28 6 6.7392 -9.1068 5.9850 29 6 5.8693 -9.0177 4.7295 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 2.6853 -3.7149 0.8878 33 1 2.6841 -3.7141 -0.8921 34 1 -0.2734 -3.8689 -1.3978 35 1 0.9524 -4.9167 -2.1512 36 1 -1.4099 -5.8661 -0.4671 37 1 -1.2929 -5.9660 -2.2402 38 1 -0.6743 -8.1230 -1.1849 39 1 0.7180 -7.4014 -2.0264 40 1 1.3715 -8.2455 0.2115 41 1 0.1457 -7.1972 0.9648 42 1 2.2981 -5.6008 2.1207 43 1 3.8250 -7.2646 3.5911 44 1 4.8288 -5.9235 2.9893 45 1 6.3560 -6.9517 4.3597 46 1 8.2106 -7.4084 2.7784 47 1 7.8747 -9.1529 2.8883 48 1 8.6708 -7.3445 5.2145 49 1 9.7370 -8.5097 4.3933 50 1 8.2210 -10.3590 5.0483 51 1 8.8035 -9.4734 6.4786 52 1 6.3663 -9.9024 6.6299 53 1 6.7023 -8.1582 6.5205 54 1 4.8400 -8.8011 5.0151 55 1 5.9062 -9.9664 4.1939 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733075704.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:43 Heat of formation + Delta-G solvation = -133.014514 kcal Electronic energy + Delta-G solvation = -30127.585234 eV Core-core repulsion = 26161.999606 eV Total energy + Delta-G solvation = -3965.585628 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.29792 -40.17224 -39.23662 -37.21557 -36.41738 -35.22502 -33.68918 -31.74614 -31.41891 -31.22420 -30.47120 -28.22392 -26.83225 -24.73109 -23.63759 -23.41070 -23.03069 -21.99916 -21.56094 -20.95303 -20.62638 -19.28122 -18.24152 -17.92087 -17.04991 -16.92085 -16.69901 -16.36408 -15.75936 -15.66815 -15.39577 -15.32516 -15.15500 -14.93907 -14.85822 -14.63131 -14.51587 -14.11409 -13.86345 -13.74649 -13.52293 -13.31970 -13.17513 -13.06928 -12.93658 -12.74642 -12.67676 -12.21884 -12.09937 -12.06678 -11.98632 -11.93416 -11.85535 -11.53860 -11.49725 -11.45915 -11.34671 -11.25364 -11.14215 -10.95058 -10.72381 -10.42188 -10.01385 -8.98580 -7.95147 -5.23189 1.46991 1.48416 1.56609 1.58054 1.81738 2.55466 2.94121 3.38196 3.53871 3.68807 3.77711 3.78281 3.85517 3.93583 4.06624 4.09627 4.15182 4.22094 4.26131 4.28566 4.33794 4.36296 4.39173 4.45833 4.49908 4.52584 4.55845 4.57053 4.57857 4.67853 4.85278 4.88235 4.94201 5.03679 5.04181 5.12038 5.12263 5.15867 5.22310 5.23488 5.24272 5.29877 5.30676 5.30914 5.38558 5.43282 5.47669 5.49950 5.51137 5.60648 6.15150 6.27283 6.56131 7.23141 7.34402 8.09493 8.34578 9.27992 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009447 B = 0.002529 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.038682 B =11069.503413 C =13492.720998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.970 3.030 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.270 1.270 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.739 5.739 10 C 0.159 3.841 11 C -0.084 4.084 12 H 0.083 0.917 13 C -0.106 4.106 14 C -0.113 4.113 15 C -0.111 4.111 16 C -0.118 4.118 17 C 0.163 3.837 18 H 0.063 0.937 19 N -0.711 5.711 20 C 0.511 3.489 21 O -0.572 6.572 22 C 0.045 3.955 23 O -0.388 6.388 24 C 0.083 3.917 25 C -0.118 4.118 26 C -0.112 4.112 27 C -0.123 4.123 28 C -0.114 4.114 29 C -0.139 4.139 30 H 0.252 0.748 31 H 0.377 0.623 32 H 0.026 0.974 33 H 0.002 0.998 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.414 0.586 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.058 0.942 51 H 0.076 0.924 52 H 0.073 0.927 53 H 0.071 0.929 54 H 0.068 0.932 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.962 -20.852 12.186 25.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.382 5.382 10 C 0.033 3.967 11 C -0.103 4.103 12 H 0.101 0.899 13 C -0.144 4.144 14 C -0.151 4.151 15 C -0.149 4.149 16 C -0.157 4.157 17 C 0.058 3.942 18 H 0.081 0.919 19 N -0.364 5.364 20 C 0.298 3.702 21 O -0.451 6.451 22 C -0.034 4.034 23 O -0.308 6.308 24 C 0.026 3.974 25 C -0.156 4.156 26 C -0.150 4.150 27 C -0.160 4.160 28 C -0.152 4.152 29 C -0.177 4.177 30 H 0.060 0.940 31 H 0.209 0.791 32 H 0.044 0.956 33 H 0.020 0.980 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.250 0.750 43 H 0.125 0.875 44 H 0.116 0.884 45 H 0.094 0.906 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.089 0.911 49 H 0.093 0.907 50 H 0.077 0.923 51 H 0.095 0.905 52 H 0.092 0.908 53 H 0.089 0.911 54 H 0.087 0.913 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.438 -21.349 11.372 25.965 hybrid contribution -0.136 1.605 0.052 1.611 sum 9.302 -19.745 11.424 24.635 Atomic orbital electron populations 1.69796 1.06411 1.26049 1.59382 1.25497 0.96388 1.00838 1.03694 0.85196 0.77791 0.79776 0.77331 1.21725 1.21955 1.19541 1.19565 0.91289 0.85496 1.41317 0.91233 1.42509 1.05633 1.00788 1.89266 1.20769 0.93681 0.85055 0.97210 1.21426 0.96840 0.92359 0.99703 0.89919 1.21443 0.97954 0.98983 0.96036 1.21536 0.97378 0.93464 1.02679 1.21475 0.98897 0.97841 0.96709 1.21827 0.97450 0.96991 0.99384 1.20825 0.92425 0.94629 0.86309 0.91884 1.45925 1.27219 1.45934 1.17293 1.20795 0.80608 0.78995 0.89766 1.90690 1.69240 1.43136 1.42008 1.22341 0.89823 0.96306 0.94931 1.88012 1.39673 1.64788 1.38283 1.22391 0.90602 0.98983 0.85407 1.21604 0.93044 1.02075 0.98831 1.21500 0.98853 0.99792 0.94845 1.21593 0.96228 0.98403 0.99783 1.21498 0.94781 1.02683 0.96215 1.22028 1.00046 0.98952 0.96670 0.93964 0.79055 0.95612 0.97990 0.92946 0.92915 0.91185 0.91020 0.89886 0.92511 0.92495 0.90333 0.74982 0.87451 0.88371 0.90645 0.92103 0.92286 0.91068 0.90725 0.92274 0.90507 0.90813 0.91063 0.91318 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.15 13.06 21.65 0.28 -57.87 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 3 Si 0.97 45.88 29.55 68.60 2.03 47.91 16 4 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.24 -13.61 9.99 84.03 0.84 -12.77 16 8 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 9 N -0.74 -36.74 5.33 -343.44 -1.83 -38.58 16 10 C 0.16 6.31 5.57 86.38 0.48 6.79 16 11 C -0.08 -2.57 1.80 -10.79 -0.02 -2.59 16 12 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 13 C -0.11 -3.24 5.08 30.59 0.16 -3.08 16 14 C -0.11 -2.64 5.92 30.59 0.18 -2.46 16 15 C -0.11 -2.38 5.92 30.59 0.18 -2.20 16 16 C -0.12 -2.73 5.49 30.60 0.17 -2.56 16 17 C 0.16 4.47 1.90 44.99 0.09 4.56 16 18 H 0.06 2.08 7.58 -2.39 -0.02 2.06 16 19 N -0.71 -17.41 4.31 -442.54 -1.91 -19.31 16 20 C 0.51 14.17 7.87 87.66 0.69 14.86 16 21 O -0.57 -21.31 16.16 16.00 0.26 -21.05 16 22 C 0.05 0.92 6.23 71.24 0.44 1.37 16 23 O -0.39 -9.68 9.52 -129.94 -1.24 -10.92 16 24 C 0.08 1.47 2.61 30.60 0.08 1.55 16 25 C -0.12 -2.01 5.57 30.59 0.17 -1.84 16 26 C -0.11 -1.33 5.92 30.60 0.18 -1.15 16 27 C -0.12 -1.29 5.92 30.59 0.18 -1.10 16 28 C -0.11 -1.22 5.92 30.59 0.18 -1.04 16 29 C -0.14 -2.04 5.54 30.60 0.17 -1.87 16 30 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.38 19.67 6.85 -92.71 -0.63 19.04 16 32 H 0.03 0.99 7.31 -2.39 -0.02 0.97 16 33 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.05 1.89 7.18 -2.39 -0.02 1.87 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 36 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.41 8.21 8.39 -92.70 -0.78 7.44 16 43 H 0.11 1.51 7.87 -2.38 -0.02 1.49 16 44 H 0.10 1.64 8.09 -2.39 -0.02 1.63 16 45 H 0.08 1.10 7.79 -2.39 -0.02 1.08 16 46 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 52 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 53 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 54 H 0.07 0.92 7.87 -2.39 -0.02 0.90 16 55 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -71.77 423.62 1.67 -70.10 By element: Atomic # 1 Polarization: 37.42 SS G_CDS: -0.56 Total: 36.86 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 4.64 Total: -7.15 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -3.45 Total: -115.75 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.98 Total: -31.97 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -71.77 1.67 -70.10 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733075704.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.913 kcal (2) G-P(sol) polarization free energy of solvation -71.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds