Wall clock time and date at job start Tue Mar 31 2020 21:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99913 * 2 1 4 4 H 1.48499 * 109.46937 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47122 * 299.99894 * 3 2 1 6 6 H 1.48505 * 109.46986 * 60.00195 * 3 2 1 7 7 C 1.38813 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99740 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00028 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99780 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47190 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.47178 * 63.23002 * 11 10 9 13 13 N 1.46504 * 109.46611 * 303.22994 * 11 10 9 14 14 C 1.34774 * 119.99586 * 158.41084 * 13 11 10 15 15 O 1.21281 * 120.00173 * 355.29812 * 14 13 11 16 16 C 1.50701 * 120.00070 * 175.30044 * 14 13 11 17 17 C 1.53002 * 109.47264 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47160 * 179.97438 * 17 16 14 19 19 H 1.09001 * 109.49118 * 305.03127 * 18 17 16 20 20 C 1.53087 * 109.48325 * 185.00032 * 18 17 16 21 21 C 1.53176 * 109.21600 * 182.44302 * 20 18 17 22 22 C 1.53175 * 109.03659 * 56.94743 * 21 20 18 23 23 C 1.53088 * 109.16324 * 303.01802 * 22 21 20 24 24 O 1.42904 * 109.41724 * 57.61372 * 23 22 21 25 25 C 1.52998 * 109.47184 * 183.23144 * 11 10 9 26 26 C 1.54265 * 110.03424 * 59.09460 * 25 11 10 27 27 C 1.54965 * 104.16126 * 217.13743 * 26 25 11 28 28 C 1.54881 * 102.77667 * 37.88818 * 27 26 25 29 29 C 1.53872 * 110.03128 * 301.87978 * 25 11 10 30 30 H 0.97002 * 119.99723 * 359.97438 * 1 2 3 31 31 H 0.96995 * 120.00201 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.47251 * 59.99831 * 10 9 7 33 33 H 1.09004 * 109.47234 * 299.99784 * 10 9 7 34 34 H 0.96996 * 120.00045 * 338.40634 * 13 11 10 35 35 H 1.09001 * 109.47408 * 59.99702 * 16 14 13 36 36 H 1.09004 * 109.47160 * 299.99977 * 16 14 13 37 37 H 1.09000 * 109.46857 * 59.99986 * 17 16 14 38 38 H 1.08995 * 109.46843 * 299.99883 * 17 16 14 39 39 H 1.08990 * 109.52453 * 62.50047 * 20 18 17 40 40 H 1.09005 * 109.51785 * 302.37317 * 20 18 17 41 41 H 1.09001 * 109.54401 * 176.81450 * 21 20 18 42 42 H 1.09003 * 109.54233 * 296.98714 * 21 20 18 43 43 H 1.08991 * 109.52599 * 62.93014 * 22 21 20 44 44 H 1.09013 * 109.52200 * 183.05337 * 22 21 20 45 45 H 1.09008 * 109.47991 * 177.59604 * 23 22 21 46 46 H 1.09004 * 109.48556 * 297.61655 * 23 22 21 47 47 H 1.08997 * 110.01684 * 180.48568 * 25 11 10 48 48 H 1.09008 * 110.48791 * 335.78722 * 26 25 11 49 49 H 1.09004 * 110.48519 * 98.42570 * 26 25 11 50 50 H 1.08996 * 110.71788 * 279.57018 * 27 26 25 51 51 H 1.09000 * 110.91933 * 156.29740 * 27 26 25 52 52 H 1.08997 * 110.48508 * 203.40126 * 28 27 26 53 53 H 1.09010 * 110.59836 * 80.81955 * 28 27 26 54 54 H 1.08997 * 110.03506 * 238.56856 * 29 25 11 55 55 H 1.09006 * 110.03658 * 359.95074 * 29 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8197 -0.0001 12 1 0.4763 -4.7949 -0.9178 13 7 0.1708 -4.6992 1.1550 14 6 -1.0271 -5.3168 1.1479 15 8 -1.4023 -5.9011 0.1535 16 6 -1.9004 -5.2814 2.3755 17 6 -3.1936 -6.0528 2.1040 18 6 -4.0799 -6.0174 3.3506 19 1 -3.5197 -6.3950 4.2060 20 6 -5.3158 -6.8918 3.1234 21 6 -6.2283 -6.8036 4.3505 22 6 -6.5919 -5.3364 4.5984 23 6 -5.3068 -4.5224 4.7703 24 8 -4.4901 -4.6726 3.6072 25 6 1.8270 -6.1433 0.0812 26 6 2.6813 -6.1827 1.3651 27 6 3.9792 -6.9117 0.9347 28 6 4.2186 -6.3688 -0.4959 29 6 2.8039 -6.2619 -1.1017 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3880 -0.0002 32 1 2.6847 -3.7145 0.8905 33 1 2.6847 -3.7145 -0.8895 34 1 0.4416 -4.1750 1.9248 35 1 -2.1391 -4.2468 2.6220 36 1 -1.3721 -5.7412 3.2107 37 1 -2.9545 -7.0874 1.8579 38 1 -3.7221 -5.5934 1.2688 39 1 -5.0074 -7.9262 2.9724 40 1 -5.8541 -6.5399 2.2432 41 1 -7.1365 -7.3791 4.1717 42 1 -5.7085 -7.2040 5.2210 43 1 -7.1555 -4.9522 3.7483 44 1 -7.1970 -5.2587 5.5018 45 1 -5.5582 -3.4702 4.9044 46 1 -4.7637 -4.8807 5.6448 47 1 1.1271 -6.9787 0.0727 48 1 2.9064 -5.1717 1.7048 49 1 2.1691 -6.7436 2.1470 50 1 3.8279 -7.9910 0.9181 51 1 4.8089 -6.6495 1.5913 52 1 4.8284 -7.0654 -1.0712 53 1 4.6932 -5.3881 -0.4596 54 1 2.5786 -7.1554 -1.6839 55 1 2.7337 -5.3769 -1.7343 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733385052.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:31 Heat of formation + Delta-G solvation = -128.774635 kcal Electronic energy + Delta-G solvation = -30568.924602 eV Core-core repulsion = 26603.522830 eV Total energy + Delta-G solvation = -3965.401773 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.21396 -40.33575 -39.30529 -36.74436 -35.19312 -34.87971 -34.51499 -33.00393 -31.47767 -30.49458 -29.51612 -27.85970 -26.76965 -25.17521 -24.66718 -23.38672 -22.59732 -21.55709 -21.24367 -20.96676 -20.02884 -19.11295 -18.07941 -17.49749 -17.49028 -16.80988 -16.55379 -16.37310 -16.24659 -15.74230 -15.57078 -15.40565 -15.19507 -15.04737 -14.88369 -14.54361 -14.38973 -14.07300 -13.88417 -13.56602 -13.49635 -13.08752 -13.00990 -12.82940 -12.77501 -12.59335 -12.20006 -12.12918 -12.07382 -12.06705 -11.90254 -11.87213 -11.84657 -11.82745 -11.76932 -11.56270 -11.38575 -11.18338 -11.16655 -10.91071 -10.74003 -10.30407 -9.89873 -8.98839 -7.93629 -5.23397 1.47766 1.48712 1.58616 1.73762 2.30627 2.56263 2.89019 3.40472 3.62843 3.66117 3.74452 3.79035 3.86156 3.95860 3.99686 4.04424 4.11596 4.16904 4.20673 4.34306 4.35992 4.38112 4.48740 4.55082 4.61962 4.63308 4.69336 4.70674 4.76855 4.78729 4.86863 4.87952 4.89022 4.94089 4.95397 5.04263 5.10842 5.13911 5.14946 5.14982 5.18073 5.20813 5.28832 5.30659 5.39594 5.42805 5.49845 5.50990 5.57072 5.68649 6.26705 6.39475 6.65510 7.33698 7.34286 8.07457 8.31279 9.29585 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007774 B = 0.003187 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3600.907011 B = 8783.945066 C =11781.250595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.298 1.298 6 H -0.293 1.293 7 C -0.241 4.241 8 H 0.079 0.921 9 N -0.743 5.743 10 C 0.149 3.851 11 C 0.154 3.846 12 H 0.048 0.952 13 N -0.708 5.708 14 C 0.510 3.490 15 O -0.588 6.588 16 C -0.129 4.129 17 C -0.089 4.089 18 C 0.092 3.908 19 H 0.075 0.925 20 C -0.151 4.151 21 C -0.120 4.120 22 C -0.155 4.155 23 C 0.053 3.947 24 O -0.404 6.404 25 C -0.088 4.088 26 C -0.118 4.118 27 C -0.117 4.117 28 C -0.120 4.120 29 C -0.123 4.123 30 H 0.249 0.751 31 H 0.372 0.628 32 H 0.045 0.955 33 H 0.034 0.966 34 H 0.408 0.592 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.073 0.927 51 H 0.075 0.925 52 H 0.077 0.923 53 H 0.060 0.940 54 H 0.068 0.932 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.899 -18.739 11.896 22.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.225 1.225 6 H -0.220 1.220 7 C -0.373 4.373 8 H 0.097 0.903 9 N -0.386 5.386 10 C 0.023 3.977 11 C 0.049 3.951 12 H 0.066 0.934 13 N -0.358 5.358 14 C 0.298 3.702 15 O -0.469 6.469 16 C -0.169 4.169 17 C -0.127 4.127 18 C 0.035 3.965 19 H 0.093 0.907 20 C -0.189 4.189 21 C -0.157 4.157 22 C -0.193 4.193 23 C -0.023 4.023 24 O -0.324 6.324 25 C -0.108 4.108 26 C -0.155 4.155 27 C -0.154 4.154 28 C -0.158 4.158 29 C -0.161 4.161 30 H 0.058 0.942 31 H 0.204 0.796 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.243 0.757 35 H 0.111 0.889 36 H 0.138 0.862 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.108 0.892 45 H 0.112 0.888 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.091 0.909 51 H 0.094 0.906 52 H 0.096 0.904 53 H 0.079 0.921 54 H 0.087 0.913 55 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.920 -18.907 11.075 22.260 hybrid contribution -0.334 1.458 -0.096 1.498 sum -4.254 -17.450 10.979 21.051 Atomic orbital electron populations 1.69851 1.06693 1.25864 1.59511 1.25561 0.96284 1.01083 1.03744 0.85087 0.78337 0.79902 0.76492 1.18816 1.22547 1.21983 1.19647 0.91519 0.85069 1.41018 0.90323 1.42569 1.05589 1.01059 1.89420 1.21168 0.93438 0.83775 0.99362 1.21027 0.90307 0.95175 0.88631 0.93364 1.45964 1.17534 1.51824 1.20445 1.21244 0.81457 0.77311 0.90151 1.90634 1.73563 1.46314 1.36413 1.21612 0.95687 1.03961 0.95593 1.21290 0.93605 1.01034 0.96738 1.22182 0.94463 0.82697 0.97185 0.90672 1.22199 0.96724 1.00804 0.99131 1.21595 0.99984 0.96340 0.97785 1.22187 0.98074 0.96053 1.02999 1.22732 0.90888 1.01195 0.87535 1.87970 1.69606 1.27768 1.47103 1.21982 0.96766 0.95239 0.96801 1.22478 0.95855 1.01122 0.96049 1.22468 0.96973 0.99930 0.96063 1.22336 0.95676 1.01257 0.96515 1.22222 0.95146 1.01683 0.97016 0.94173 0.79580 0.93756 0.94787 0.75655 0.88915 0.86208 0.89430 0.93265 0.89589 0.92498 0.90567 0.90653 0.92324 0.89159 0.88839 0.91975 0.91871 0.91431 0.91347 0.90851 0.90631 0.90443 0.92116 0.91279 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.99 13.06 21.65 0.28 -59.71 16 2 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 3 Si 0.97 46.17 29.55 68.60 2.03 48.19 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 7 C -0.24 -13.28 9.99 84.03 0.84 -12.44 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.74 -37.52 5.45 -343.44 -1.87 -39.39 16 10 C 0.15 5.80 5.25 86.38 0.45 6.25 16 11 C 0.15 5.37 1.82 44.99 0.08 5.46 16 12 H 0.05 2.03 7.62 -2.39 -0.02 2.01 16 13 N -0.71 -23.25 4.28 -442.53 -1.89 -25.14 16 14 C 0.51 17.10 7.74 87.66 0.68 17.78 16 15 O -0.59 -23.86 15.67 -3.03 -0.05 -23.90 16 16 C -0.13 -3.32 5.60 29.85 0.17 -3.16 16 17 C -0.09 -2.21 4.21 30.60 0.13 -2.08 16 18 C 0.09 1.88 2.65 30.62 0.08 1.96 16 19 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 20 C -0.15 -2.60 5.41 30.68 0.17 -2.43 16 21 C -0.12 -1.62 6.03 30.71 0.19 -1.43 16 22 C -0.16 -2.29 6.14 30.68 0.19 -2.10 16 23 C 0.05 0.94 6.84 72.01 0.49 1.43 16 24 O -0.40 -9.99 9.95 -148.98 -1.48 -11.48 16 25 C -0.09 -2.45 2.91 -10.07 -0.03 -2.48 16 26 C -0.12 -2.72 5.85 31.70 0.19 -2.54 16 27 C -0.12 -2.25 6.91 31.91 0.22 -2.03 16 28 C -0.12 -2.55 6.83 31.67 0.22 -2.33 16 29 C -0.12 -3.14 5.94 31.32 0.19 -2.95 16 30 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 31 H 0.37 20.63 7.40 -92.71 -0.69 19.95 16 32 H 0.04 1.63 5.93 -2.39 -0.01 1.62 16 33 H 0.03 1.35 6.47 -2.39 -0.02 1.34 16 34 H 0.41 12.68 8.58 -92.71 -0.80 11.89 16 35 H 0.09 2.63 7.83 -2.39 -0.02 2.61 16 36 H 0.12 2.28 8.14 -2.38 -0.02 2.26 16 37 H 0.09 2.04 8.10 -2.39 -0.02 2.02 16 38 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 39 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 46 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 47 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.07 1.71 5.65 -2.38 -0.01 1.69 16 49 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 52 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 53 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 54 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 55 H 0.06 1.61 6.20 -2.38 -0.01 1.60 16 Total: -1.00 -70.44 421.32 1.11 -69.34 By element: Atomic # 1 Polarization: 49.60 SS G_CDS: -0.62 Total: 48.98 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 4.71 Total: -6.90 kcal Atomic # 7 Polarization: -120.76 SS G_CDS: -3.48 Total: -124.24 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -1.53 Total: -35.38 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -70.44 1.11 -69.34 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733385052.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.438 kcal (2) G-P(sol) polarization free energy of solvation -70.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds