Wall clock time and date at job start Tue Mar 31 2020 20:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00545 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00295 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00006 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.49920 * 59.93302 * 10 9 7 12 12 O 1.42899 * 109.47169 * 305.00333 * 11 10 9 13 13 C 1.53038 * 109.49564 * 299.83665 * 10 9 7 14 14 C 1.53042 * 109.53902 * 301.41538 * 13 10 9 15 15 C 1.53188 * 109.31069 * 298.63206 * 14 13 10 16 16 N 1.46933 * 108.77698 * 54.63394 * 15 14 13 17 17 C 1.34770 * 120.62960 * 126.36535 * 16 15 14 18 18 O 1.21284 * 120.00230 * 180.02562 * 17 16 15 19 19 C 1.50699 * 120.00231 * 0.02647 * 17 16 15 20 20 C 1.53002 * 109.47213 * 179.97438 * 19 17 16 21 21 C 1.54236 * 108.89878 * 296.39712 * 20 19 17 22 22 C 1.50555 * 108.48564 * 159.17680 * 21 20 19 23 23 C 1.54071 * 112.41164 * 94.26507 * 22 21 20 24 24 C 1.54061 * 112.82012 * 318.27975 * 23 22 21 25 25 C 1.50468 * 112.49720 * 318.28815 * 24 23 22 26 26 C 1.45546 * 108.89736 * 173.60452 * 20 19 17 27 27 C 1.46920 * 118.73633 * 306.39750 * 16 15 14 28 28 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 30 30 H 1.09006 * 109.47420 * 65.00210 * 11 10 9 31 31 H 1.09008 * 109.47585 * 185.00038 * 11 10 9 32 32 H 0.96702 * 113.99840 * 180.02562 * 12 11 10 33 33 H 1.09002 * 109.45976 * 61.43405 * 13 10 9 34 34 H 1.09007 * 109.46083 * 181.39318 * 13 10 9 35 35 H 1.09003 * 109.49502 * 178.68481 * 14 13 10 36 36 H 1.09000 * 109.50040 * 58.58427 * 14 13 10 37 37 H 1.09003 * 109.58968 * 294.84772 * 15 14 13 38 38 H 1.09002 * 109.70587 * 174.48954 * 15 14 13 39 39 H 1.09006 * 109.47263 * 299.99825 * 19 17 16 40 40 H 1.09006 * 109.47321 * 60.00002 * 19 17 16 41 41 H 1.08999 * 108.87174 * 55.00524 * 20 19 17 42 42 H 1.09005 * 109.62520 * 278.97768 * 21 20 19 43 43 H 1.09004 * 109.62854 * 39.55089 * 21 20 19 44 44 H 1.08997 * 108.92350 * 333.51559 * 22 21 20 45 45 H 1.08999 * 108.83579 * 214.96010 * 22 21 20 46 46 H 1.08999 * 108.81279 * 197.41722 * 23 22 21 47 47 H 1.09006 * 108.80900 * 79.14409 * 23 22 21 48 48 H 1.08995 * 108.87742 * 197.50300 * 24 23 22 49 49 H 1.09004 * 108.79345 * 79.01005 * 24 23 22 50 50 H 1.09000 * 109.62780 * 334.44265 * 25 24 23 51 51 H 1.08999 * 109.78963 * 213.95887 * 25 24 23 52 52 H 1.09007 * 108.89702 * 303.44574 * 26 20 19 53 53 H 1.09003 * 108.89522 * 62.02744 * 26 20 19 54 54 H 1.09000 * 109.58301 * 293.80885 * 27 16 15 55 55 H 1.09002 * 109.70308 * 173.46151 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 6 2.9438 -3.7351 1.2496 12 8 3.7932 -2.5872 1.3028 13 6 2.9301 -3.7431 -1.2499 14 6 2.0477 -3.6314 -2.4953 15 6 1.0526 -4.7959 -2.5172 16 7 0.3092 -4.8067 -1.2499 17 6 -1.0385 -4.8024 -1.2444 18 8 -1.6407 -4.8109 -0.1917 19 6 -1.7973 -4.7870 -2.5463 20 6 -3.3004 -4.7856 -2.2605 21 6 -3.6738 -6.0989 -1.5432 22 6 -4.9790 -5.8942 -0.8213 23 6 -6.1908 -6.3443 -1.6596 24 6 -6.0782 -5.9347 -3.1405 25 6 -5.5456 -4.5380 -3.3127 26 6 -4.0186 -4.6173 -3.5152 27 6 1.0630 -4.8216 0.0111 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3880 0.0092 30 1 2.3166 -3.7645 2.1407 31 1 3.5543 -4.6371 1.2052 32 1 4.3841 -2.5703 2.0680 33 1 3.6553 -2.9294 -1.2446 34 1 3.4558 -4.6979 -1.2617 35 1 2.6720 -3.6695 -3.3880 36 1 1.5028 -2.6877 -2.4718 37 1 1.5925 -5.7359 -2.6321 38 1 0.3577 -4.6699 -3.3475 39 1 -1.5335 -3.8921 -3.1101 40 1 -1.5393 -5.6721 -3.1278 41 1 -3.5339 -3.9466 -1.6050 42 1 -3.7803 -6.8988 -2.2760 43 1 -2.8958 -6.3578 -0.8249 44 1 -5.0888 -4.8364 -0.5825 45 1 -4.9609 -6.4649 0.1071 46 1 -7.0932 -5.8999 -1.2397 47 1 -6.2756 -7.4294 -1.6004 48 1 -7.0652 -5.9948 -3.5991 49 1 -5.4110 -6.6316 -3.6478 50 1 -5.7666 -3.9495 -2.4222 51 1 -6.0067 -4.0719 -4.1834 52 1 -3.6783 -3.7005 -3.9966 53 1 -3.7938 -5.4619 -4.1666 54 1 1.6036 -5.7636 0.1024 55 1 0.3767 -4.7113 0.8508 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733824824.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:19 Heat of formation + Delta-G solvation = -110.988202 kcal Electronic energy + Delta-G solvation = -32238.154075 eV Core-core repulsion = 28273.523579 eV Total energy + Delta-G solvation = -3964.630495 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.52437 -40.11261 -38.88182 -37.09777 -35.52411 -34.60663 -33.69157 -32.92898 -32.62345 -30.71653 -29.26194 -26.69103 -26.30494 -25.63046 -25.48202 -24.12485 -23.02529 -21.27231 -20.48403 -20.11997 -19.53398 -19.17344 -17.99511 -17.89592 -16.86990 -16.57481 -16.56725 -16.41812 -15.79224 -15.59489 -15.42785 -15.30539 -15.01861 -14.86663 -14.75233 -14.30669 -13.95197 -13.80355 -13.72344 -13.59511 -13.45279 -13.21468 -13.16555 -12.95442 -12.83579 -12.72645 -12.61550 -12.45798 -12.01598 -11.81466 -11.69016 -11.57113 -11.48603 -11.42536 -11.37324 -11.26920 -11.17917 -11.14480 -10.94745 -10.77232 -10.54994 -10.48465 -9.43815 -8.85993 -7.77182 -5.01958 1.45616 1.46993 1.55842 1.76896 2.17359 2.65261 3.43599 3.60703 3.68395 3.71087 3.77701 3.85274 4.02185 4.04369 4.18637 4.23526 4.25684 4.29464 4.37268 4.43930 4.45864 4.47292 4.54455 4.57119 4.58711 4.65613 4.68706 4.69923 4.79379 4.83578 4.89241 4.93638 4.98426 5.03965 5.05243 5.11854 5.20000 5.23011 5.33705 5.36025 5.37572 5.41189 5.42748 5.57821 5.59468 5.61854 5.68609 5.68982 5.72710 5.93340 6.44541 6.58487 7.14191 7.35342 7.51256 8.23105 8.46458 9.47204 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.003391 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.142482 B = 8254.257588 C = 9187.137730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.098 4.098 3 Si 0.958 3.042 4 H -0.294 1.294 5 H -0.309 1.309 6 H -0.272 1.272 7 C -0.173 4.173 8 H 0.095 0.905 9 N -0.714 5.714 10 C 0.175 3.825 11 C 0.074 3.926 12 O -0.564 6.564 13 C -0.110 4.110 14 C -0.126 4.126 15 C 0.112 3.888 16 N -0.603 5.603 17 C 0.506 3.494 18 O -0.581 6.581 19 C -0.130 4.130 20 C -0.064 4.064 21 C -0.101 4.101 22 C -0.114 4.114 23 C -0.113 4.113 24 C -0.113 4.113 25 C -0.118 4.118 26 C -0.110 4.110 27 C 0.120 3.880 28 H 0.238 0.762 29 H 0.363 0.637 30 H 0.021 0.979 31 H 0.068 0.932 32 H 0.373 0.627 33 H 0.044 0.956 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.036 0.964 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.124 0.876 41 H 0.033 0.967 42 H 0.078 0.922 43 H 0.051 0.949 44 H 0.036 0.964 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.067 0.933 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.045 0.955 51 H 0.073 0.927 52 H 0.056 0.944 53 H 0.083 0.917 54 H 0.101 0.899 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.650 -18.978 -9.607 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.287 4.287 3 Si 0.791 3.209 4 H -0.222 1.222 5 H -0.236 1.236 6 H -0.198 1.198 7 C -0.305 4.305 8 H 0.113 0.887 9 N -0.352 5.352 10 C 0.084 3.916 11 C -0.006 4.006 12 O -0.369 6.369 13 C -0.149 4.149 14 C -0.165 4.165 15 C -0.010 4.010 16 N -0.335 5.335 17 C 0.297 3.703 18 O -0.461 6.461 19 C -0.169 4.169 20 C -0.083 4.083 21 C -0.139 4.139 22 C -0.152 4.152 23 C -0.151 4.151 24 C -0.151 4.151 25 C -0.156 4.156 26 C -0.147 4.147 27 C -0.003 4.003 28 H 0.047 0.953 29 H 0.194 0.806 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.221 0.779 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.055 0.945 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.142 0.858 41 H 0.052 0.948 42 H 0.096 0.904 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.064 0.936 51 H 0.092 0.908 52 H 0.075 0.925 53 H 0.101 0.899 54 H 0.119 0.881 55 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.108 -18.739 -9.611 21.288 hybrid contribution 0.276 1.791 1.344 2.256 sum -2.832 -16.949 -8.266 19.069 Atomic orbital electron populations 1.69873 1.06469 1.24620 1.62880 1.25412 0.96004 1.00482 1.06840 0.85305 0.77680 0.81017 0.76916 1.22204 1.23639 1.19768 1.19826 0.91930 0.84026 1.34736 0.88730 1.42568 1.04569 1.00673 1.87439 1.20390 0.91158 0.86076 0.93935 1.22652 0.92297 0.88014 0.97664 1.86803 1.55086 1.44949 1.50090 1.21765 0.97533 1.01115 0.94490 1.21750 0.97984 0.98343 0.98383 1.21969 0.95018 0.99286 0.84710 1.48052 1.05331 1.72380 1.07712 1.21276 0.82128 0.74653 0.92272 1.90649 1.68550 1.51669 1.35257 1.21881 0.95465 1.05347 0.94211 1.19798 0.92676 0.98157 0.97661 1.21343 0.96815 0.96524 0.99177 1.21246 0.95290 1.00142 0.98479 1.21910 0.96787 1.01002 0.95351 1.21313 1.01584 0.96415 0.95764 1.21312 0.95151 0.97673 1.01421 1.20515 0.95213 1.02624 0.96367 1.21560 0.93829 0.97894 0.87057 0.95287 0.80553 0.96025 0.91411 0.77933 0.93710 0.90127 0.89405 0.94542 0.88283 0.88300 0.88977 0.85762 0.94803 0.90368 0.93003 0.94494 0.93439 0.92668 0.91402 0.91338 0.91113 0.93600 0.90832 0.92502 0.89872 0.88057 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.15 13.06 21.65 0.28 -63.87 16 2 C -0.10 -5.89 5.50 84.86 0.47 -5.43 16 3 Si 0.96 49.28 29.55 68.60 2.03 51.31 16 4 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 5 H -0.31 -16.32 7.11 99.48 0.71 -15.61 16 6 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 7 C -0.17 -9.63 8.14 84.03 0.68 -8.95 16 8 H 0.10 5.19 5.29 -2.91 -0.02 5.17 16 9 N -0.71 -35.98 4.22 -303.02 -1.28 -37.26 16 10 C 0.18 6.52 0.68 3.68 0.00 6.52 16 11 C 0.07 2.50 6.09 71.98 0.44 2.94 16 12 O -0.56 -20.85 9.91 -148.98 -1.48 -22.33 16 13 C -0.11 -3.51 4.43 30.62 0.14 -3.38 16 14 C -0.13 -3.77 5.93 30.67 0.18 -3.58 16 15 C 0.11 2.60 6.34 86.36 0.55 3.15 16 16 N -0.60 -18.60 2.87 -818.92 -2.35 -20.95 16 17 C 0.51 17.30 7.19 87.66 0.63 17.93 16 18 O -0.58 -24.86 13.46 -3.04 -0.04 -24.90 16 19 C -0.13 -3.28 3.44 29.85 0.10 -3.18 16 20 C -0.06 -1.68 1.39 -12.65 -0.02 -1.70 16 21 C -0.10 -2.53 4.62 30.22 0.14 -2.40 16 22 C -0.11 -2.87 5.32 30.16 0.16 -2.71 16 23 C -0.11 -2.13 5.85 31.32 0.18 -1.94 16 24 C -0.11 -1.85 5.32 30.13 0.16 -1.69 16 25 C -0.12 -2.28 5.61 30.19 0.17 -2.11 16 26 C -0.11 -2.22 4.44 28.74 0.13 -2.09 16 27 C 0.12 3.96 5.14 86.36 0.44 4.40 16 28 H 0.24 15.38 8.31 -92.71 -0.77 14.61 16 29 H 0.36 21.11 7.65 -92.71 -0.71 20.40 16 30 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.37 10.02 9.12 -74.06 -0.68 9.34 16 33 H 0.04 1.70 6.99 -2.39 -0.02 1.68 16 34 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.04 1.48 7.53 -2.39 -0.02 1.46 16 37 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.10 1.90 5.93 -2.39 -0.01 1.89 16 39 H 0.09 2.37 7.60 -2.38 -0.02 2.35 16 40 H 0.12 2.17 7.94 -2.38 -0.02 2.15 16 41 H 0.03 1.18 7.26 -2.39 -0.02 1.17 16 42 H 0.08 1.55 6.96 -2.38 -0.02 1.53 16 43 H 0.05 1.58 5.76 -2.38 -0.01 1.57 16 44 H 0.04 1.10 6.63 -2.39 -0.02 1.08 16 45 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 47 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 48 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.07 1.02 6.62 -2.38 -0.02 1.01 16 50 H 0.05 1.08 6.98 -2.39 -0.02 1.06 16 51 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 52 H 0.06 1.19 8.04 -2.38 -0.02 1.17 16 53 H 0.08 1.29 7.46 -2.39 -0.02 1.27 16 54 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 55 H 0.06 2.37 7.01 -2.39 -0.02 2.35 16 Total: -1.00 -78.46 398.46 1.23 -77.23 By element: Atomic # 1 Polarization: 45.47 SS G_CDS: -0.50 Total: 44.97 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 4.56 Total: -4.21 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -3.34 Total: -122.08 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -1.52 Total: -47.23 kcal Atomic # 14 Polarization: 49.28 SS G_CDS: 2.03 Total: 51.31 kcal Total: -78.46 1.23 -77.23 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733824824.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.753 kcal (2) G-P(sol) polarization free energy of solvation -78.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds