Wall clock time and date at job start Tue Mar 31 2020 21:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47632 * 2 1 4 4 C 1.52998 * 109.47147 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47042 * 299.99819 * 4 3 2 6 6 O 1.42903 * 109.46815 * 180.02562 * 5 4 3 7 7 C 1.42902 * 113.99632 * 149.99920 * 6 5 4 8 8 C 1.50705 * 109.46948 * 179.97438 * 7 6 5 9 9 O 1.21281 * 119.99872 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99810 * 180.02562 * 8 7 6 11 11 C 1.46932 * 120.62744 * 180.02562 * 10 8 7 12 12 C 1.53192 * 108.77844 * 126.40951 * 11 10 8 13 13 C 1.53045 * 109.30943 * 54.63390 * 12 11 10 14 14 C 1.53003 * 109.45779 * 178.62811 * 13 12 11 15 15 N 1.46490 * 109.46384 * 58.65283 * 13 12 11 16 16 C 1.36935 * 120.00121 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46685 * 269.99637 * 20 18 16 22 22 H 1.48494 * 109.47357 * 29.99716 * 20 18 16 23 23 H 1.48502 * 109.47120 * 150.00435 * 20 18 16 24 24 C 1.53044 * 109.52582 * 298.63661 * 13 12 11 25 25 C 1.46920 * 120.63299 * 0.02562 * 10 8 7 26 26 C 1.52995 * 109.47002 * 60.00092 * 5 4 3 27 27 C 1.52993 * 109.47479 * 299.99871 * 26 5 4 28 28 H 1.09008 * 109.47131 * 59.99719 * 1 2 3 29 29 H 1.08995 * 109.47517 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46856 * 300.00105 * 1 2 3 31 31 H 1.09004 * 109.46856 * 239.99895 * 2 1 3 32 32 H 1.08997 * 109.47391 * 59.99865 * 3 2 1 33 33 H 1.09003 * 109.46807 * 299.99934 * 3 2 1 34 34 H 1.09002 * 109.46649 * 179.97438 * 4 3 2 35 35 H 1.08998 * 109.47094 * 60.00369 * 4 3 2 36 36 H 1.08997 * 109.46931 * 299.99953 * 5 4 3 37 37 H 1.08997 * 109.46988 * 60.00522 * 7 6 5 38 38 H 1.08996 * 109.47314 * 299.99732 * 7 6 5 39 39 H 1.08996 * 109.58846 * 6.61888 * 11 10 8 40 40 H 1.09005 * 109.69444 * 246.26577 * 11 10 8 41 41 H 1.08995 * 109.49437 * 294.68286 * 12 11 10 42 42 H 1.08996 * 109.52274 * 174.59662 * 12 11 10 43 43 H 1.08997 * 109.46965 * 300.02851 * 14 13 12 44 44 H 1.09002 * 109.46920 * 60.02578 * 14 13 12 45 45 H 1.08994 * 109.46997 * 180.02562 * 14 13 12 46 46 H 0.97000 * 120.00577 * 359.97352 * 15 13 12 47 47 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 48 48 H 1.09000 * 109.49970 * 181.31217 * 24 13 12 49 49 H 1.09001 * 109.50257 * 301.41366 * 24 13 12 50 50 H 1.08998 * 109.58779 * 353.38124 * 25 10 8 51 51 H 1.09004 * 109.58787 * 113.65837 * 25 10 8 52 52 H 1.09004 * 109.47085 * 59.99973 * 26 5 4 53 53 H 1.09001 * 109.47069 * 179.97438 * 26 5 4 54 54 H 1.09004 * 109.47045 * 300.00126 * 27 26 5 55 55 H 1.09001 * 109.47710 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0805 0.7208 1.2483 6 8 5.5096 0.7213 1.2479 7 6 6.0910 0.7211 2.5533 8 6 7.5934 0.7210 2.4340 9 8 8.1147 0.7214 1.3389 10 7 8.3575 0.7203 3.5442 11 6 9.8234 0.7207 3.4439 12 6 10.3738 1.8874 4.2701 13 6 9.8417 1.7893 5.7017 14 6 10.4166 2.9338 6.5387 15 7 10.2445 0.5075 6.2854 16 6 9.8807 0.1947 7.5679 17 1 9.2964 0.8927 8.1490 18 6 10.2629 -1.0197 8.1213 19 7 10.9754 -1.8703 7.4133 20 14 9.7659 -1.4467 9.8706 21 1 10.8115 -0.9716 10.8121 22 1 8.4740 -0.7891 10.1927 23 1 9.6175 -2.9188 9.9977 24 6 8.3143 1.8855 5.6874 25 6 7.7406 0.7191 4.8776 26 6 3.5704 -0.7216 1.2483 27 6 2.0405 -0.7215 1.2489 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.6769 1.9563 0.8899 33 1 1.6768 1.9562 -0.8900 34 1 3.9334 2.4699 -0.0011 35 1 3.9330 0.9286 -0.8909 36 1 3.7176 1.2346 2.1384 37 1 5.7699 -0.1691 3.0940 38 1 5.7693 1.6108 3.0945 39 1 10.1183 0.8399 2.4014 40 1 10.2183 -0.2190 3.8303 41 1 10.0534 2.8301 3.8266 42 1 11.4628 1.8428 4.2829 43 1 11.5044 2.8652 6.5493 44 1 10.1169 3.8876 6.1045 45 1 10.0381 2.8638 7.5584 46 1 10.7690 -0.1197 5.7634 47 1 11.2332 -1.6487 6.5048 48 1 7.9373 1.8390 6.7090 49 1 8.0134 2.8283 5.2306 50 1 6.6613 0.8373 4.7810 51 1 7.9613 -0.2219 5.3815 52 1 3.9334 -1.2353 0.3581 53 1 3.9345 -1.2357 2.1378 54 1 1.6776 -0.2078 2.1392 55 1 1.6770 -1.7492 1.2485 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733869311.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:51 Heat of formation + Delta-G solvation = -109.907620 kcal Electronic energy + Delta-G solvation = -30882.219120 eV Core-core repulsion = 26917.635482 eV Total energy + Delta-G solvation = -3964.583638 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.47737 -40.29754 -39.30173 -37.65431 -36.22077 -34.42031 -32.86939 -32.27006 -31.75903 -30.62953 -29.74916 -28.41546 -26.49832 -25.68734 -24.33171 -24.05044 -23.60336 -22.19148 -21.27690 -20.73131 -19.82702 -18.87195 -18.52686 -17.61564 -17.21272 -17.03136 -16.62827 -16.18781 -15.87124 -15.57269 -15.35602 -15.16757 -15.13450 -15.05131 -14.88118 -14.55056 -14.16717 -13.94137 -13.83700 -13.60303 -13.49112 -13.25614 -13.19247 -12.85767 -12.80317 -12.71551 -12.61710 -12.47702 -12.25974 -12.15953 -12.06882 -11.87535 -11.75884 -11.74559 -11.55799 -11.46684 -11.31589 -11.19020 -10.95045 -10.89574 -10.73343 -10.44750 -9.71616 -8.97808 -8.23468 -5.17441 1.48072 1.61800 1.67483 1.70968 1.84002 2.74938 2.77898 3.44665 3.52490 3.68273 3.72513 3.75556 3.85696 3.91140 3.96902 4.06077 4.07845 4.12625 4.19283 4.21447 4.26059 4.31288 4.33713 4.49137 4.54706 4.57341 4.59482 4.61140 4.70695 4.78868 4.81135 4.90117 4.92990 4.94362 4.96743 4.99488 5.01588 5.10130 5.11221 5.16044 5.22869 5.23519 5.26514 5.29227 5.39975 5.42970 5.50509 5.57207 5.59832 5.77724 6.12594 6.38522 6.62287 7.06414 7.21693 8.12700 8.26197 9.28067 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014599 B = 0.002456 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.419849 B =11396.642737 C =12427.412884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.104 4.104 4 C -0.115 4.115 5 C 0.084 3.916 6 O -0.387 6.387 7 C 0.051 3.949 8 C 0.509 3.491 9 O -0.577 6.577 10 N -0.598 5.598 11 C 0.120 3.880 12 C -0.120 4.120 13 C 0.191 3.809 14 C -0.142 4.142 15 N -0.736 5.736 16 C -0.296 4.296 17 H 0.071 0.929 18 C -0.111 4.111 19 N -0.986 5.986 20 Si 1.120 2.880 21 H -0.294 1.294 22 H -0.269 1.269 23 H -0.303 1.303 24 C -0.128 4.128 25 C 0.120 3.880 26 C -0.142 4.142 27 C -0.107 4.107 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.036 0.964 44 H 0.068 0.932 45 H 0.042 0.958 46 H 0.356 0.644 47 H 0.242 0.758 48 H 0.069 0.931 49 H 0.078 0.922 50 H 0.105 0.895 51 H 0.054 0.946 52 H 0.055 0.945 53 H 0.062 0.938 54 H 0.073 0.927 55 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.891 9.488 -11.316 25.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.142 4.142 4 C -0.153 4.153 5 C 0.027 3.973 6 O -0.306 6.306 7 C -0.028 4.028 8 C 0.298 3.702 9 O -0.457 6.457 10 N -0.331 5.331 11 C -0.002 4.002 12 C -0.158 4.158 13 C 0.101 3.899 14 C -0.202 4.202 15 N -0.378 5.378 16 C -0.427 4.427 17 H 0.089 0.911 18 C -0.301 4.301 19 N -0.635 5.635 20 Si 0.947 3.053 21 H -0.222 1.222 22 H -0.194 1.194 23 H -0.230 1.230 24 C -0.168 4.168 25 C -0.002 4.002 26 C -0.180 4.180 27 C -0.144 4.144 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.126 0.874 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.056 0.944 44 H 0.087 0.913 45 H 0.061 0.939 46 H 0.188 0.812 47 H 0.053 0.947 48 H 0.088 0.912 49 H 0.097 0.903 50 H 0.123 0.877 51 H 0.072 0.928 52 H 0.074 0.926 53 H 0.081 0.919 54 H 0.091 0.909 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.577 8.511 -10.736 24.721 hybrid contribution 0.803 0.413 -1.005 1.351 sum -19.774 8.925 -11.740 24.668 Atomic orbital electron populations 1.21799 0.94088 1.02028 1.02262 1.21191 0.96286 0.95905 0.98088 1.21543 0.92715 0.96727 1.03200 1.21583 0.96611 1.00359 0.96697 1.22402 0.78687 0.96261 0.99939 1.88016 1.21234 1.95333 1.26060 1.22313 0.89154 1.04358 0.86959 1.20860 0.90166 0.75703 0.83462 1.90658 1.75626 1.51560 1.27808 1.48090 1.06625 1.72000 1.06387 1.21398 0.79503 0.98661 1.00674 1.22022 1.00713 0.98446 0.94637 1.19812 0.93023 0.85964 0.91083 1.22111 0.99954 0.98029 1.00064 1.42705 1.64674 1.17193 1.13258 1.20188 1.28946 1.02237 0.91363 0.91080 1.26821 1.00552 0.94065 1.08701 1.70963 1.42900 1.38760 1.10901 0.82688 0.76097 0.75042 0.71433 1.22211 1.19383 1.23016 1.22206 0.96881 0.97600 1.00120 1.21715 0.97766 0.99852 0.80906 1.22040 0.97195 0.96612 1.02156 1.21540 0.93089 1.01218 0.98599 0.92224 0.92533 0.92145 0.91867 0.90781 0.90532 0.91428 0.92457 0.90265 0.88815 0.87411 0.90114 0.93250 0.89687 0.90882 0.94431 0.91287 0.93890 0.81156 0.94748 0.91228 0.90312 0.87665 0.92754 0.92590 0.91945 0.90857 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.19 71.98 0.66 -0.68 16 2 C -0.10 -1.15 2.72 -10.79 -0.03 -1.18 16 3 C -0.10 -1.24 5.20 30.59 0.16 -1.08 16 4 C -0.11 -1.94 5.57 30.59 0.17 -1.77 16 5 C 0.08 1.58 2.61 30.59 0.08 1.66 16 6 O -0.39 -10.43 9.52 -129.94 -1.24 -11.67 16 7 C 0.05 1.23 4.57 71.24 0.33 1.56 16 8 C 0.51 16.60 7.78 87.66 0.68 17.28 16 9 O -0.58 -23.64 15.91 16.00 0.25 -23.39 16 10 N -0.60 -18.95 2.97 -818.98 -2.43 -21.38 16 11 C 0.12 4.09 6.16 86.36 0.53 4.62 16 12 C -0.12 -3.71 4.96 30.67 0.15 -3.56 16 13 C 0.19 6.58 0.74 3.64 0.00 6.59 16 14 C -0.14 -4.65 8.44 71.98 0.61 -4.04 16 15 N -0.74 -32.90 4.14 -303.23 -1.25 -34.15 16 16 C -0.30 -14.85 8.68 84.03 0.73 -14.12 16 17 H 0.07 3.46 6.70 -2.91 -0.02 3.44 16 18 C -0.11 -6.07 5.50 84.86 0.47 -5.61 16 19 N -0.99 -59.91 13.70 21.65 0.30 -59.61 16 20 Si 1.12 50.23 29.92 68.60 2.05 52.29 16 21 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 23 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 24 C -0.13 -3.81 4.70 30.66 0.14 -3.66 16 25 C 0.12 3.52 6.08 86.35 0.52 4.05 16 26 C -0.14 -2.50 5.54 30.59 0.17 -2.33 16 27 C -0.11 -1.38 5.21 30.59 0.16 -1.22 16 28 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.18 7.78 -2.39 -0.02 1.16 16 37 H 0.09 1.94 7.67 -2.39 -0.02 1.92 16 38 H 0.11 1.91 7.64 -2.39 -0.02 1.89 16 39 H 0.08 2.80 7.01 -2.39 -0.02 2.79 16 40 H 0.05 1.90 6.94 -2.38 -0.02 1.88 16 41 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.04 1.51 7.27 -2.39 -0.02 1.49 16 46 H 0.36 17.45 5.30 -92.71 -0.49 16.96 16 47 H 0.24 14.72 6.77 -92.71 -0.63 14.10 16 48 H 0.07 2.21 7.31 -2.39 -0.02 2.19 16 49 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.11 2.26 5.93 -2.39 -0.01 2.25 16 51 H 0.05 2.02 7.75 -2.38 -0.02 2.00 16 52 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 53 H 0.06 1.11 7.87 -2.39 -0.02 1.09 16 54 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 55 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -69.35 413.34 3.71 -65.64 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: 0.50 Total: 35.78 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 5.54 Total: -3.51 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -3.39 Total: -115.15 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -0.98 Total: -35.05 kcal Atomic # 14 Polarization: 50.23 SS G_CDS: 2.05 Total: 52.29 kcal Total: -69.35 3.71 -65.64 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733869311.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.268 kcal (2) G-P(sol) polarization free energy of solvation -69.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds