Wall clock time and date at job start Tue Mar 31 2020 21:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47297 * 2 1 4 4 C 1.53001 * 109.46922 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46924 * 299.99549 * 4 3 2 6 6 C 1.52991 * 109.47431 * 300.00575 * 5 4 3 7 7 C 1.50705 * 109.46853 * 180.02562 * 5 4 3 8 8 O 1.21272 * 119.99931 * 6.17018 * 7 5 4 9 9 N 1.34780 * 119.99652 * 186.16628 * 7 5 4 10 10 C 1.46918 * 120.62870 * 174.68635 * 9 7 5 11 11 C 1.53194 * 108.77471 * 126.41247 * 10 9 7 12 12 C 1.53041 * 109.31084 * 54.63598 * 11 10 9 13 13 O 1.42904 * 109.46108 * 58.65571 * 12 11 10 14 14 C 1.53004 * 109.45828 * 178.62549 * 12 11 10 15 15 N 1.46502 * 109.46958 * 180.02562 * 14 12 11 16 16 C 1.36938 * 120.00124 * 180.02562 * 15 14 12 17 17 H 1.07997 * 119.99428 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00192 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99932 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00175 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47235 * 60.00265 * 20 18 16 22 22 H 1.48504 * 109.47307 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47362 * 300.00437 * 20 18 16 24 24 C 1.53035 * 109.52767 * 298.64319 * 12 11 10 25 25 C 1.46926 * 120.62979 * 354.71365 * 9 7 5 26 26 C 1.53007 * 109.46648 * 60.00636 * 5 4 3 27 27 C 1.53001 * 109.46939 * 299.99355 * 26 5 4 28 28 H 1.09003 * 109.46529 * 59.99562 * 1 2 3 29 29 H 1.08999 * 109.47504 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46738 * 299.99958 * 1 2 3 31 31 H 1.09001 * 109.46738 * 240.00041 * 2 1 3 32 32 H 1.09001 * 109.47193 * 60.00320 * 3 2 1 33 33 H 1.09000 * 109.47097 * 300.00183 * 3 2 1 34 34 H 1.09004 * 109.46770 * 180.02562 * 4 3 2 35 35 H 1.08998 * 109.47737 * 59.99955 * 4 3 2 36 36 H 1.09005 * 109.47129 * 314.37975 * 6 5 4 37 37 H 1.08996 * 109.47422 * 74.38257 * 6 5 4 38 38 H 1.09003 * 109.47389 * 194.38386 * 6 5 4 39 39 H 1.09000 * 109.58922 * 6.63116 * 10 9 7 40 40 H 1.09004 * 109.70627 * 246.26944 * 10 9 7 41 41 H 1.09000 * 109.49881 * 294.68336 * 11 10 9 42 42 H 1.08998 * 109.52558 * 174.60078 * 11 10 9 43 43 H 0.96698 * 114.00355 * 179.97438 * 13 12 11 44 44 H 1.08996 * 109.47069 * 300.02598 * 14 12 11 45 45 H 1.09003 * 109.46901 * 60.03085 * 14 12 11 46 46 H 0.96999 * 119.99971 * 359.97438 * 15 14 12 47 47 H 0.97001 * 120.00146 * 179.97438 * 19 18 16 48 48 H 1.09002 * 109.50013 * 181.31210 * 24 12 11 49 49 H 1.09003 * 109.49447 * 301.40673 * 24 12 11 50 50 H 1.09003 * 109.58840 * 353.36878 * 25 9 7 51 51 H 1.08993 * 109.58973 * 113.65643 * 25 9 7 52 52 H 1.08998 * 109.47240 * 60.00068 * 26 5 4 53 53 H 1.09000 * 109.46792 * 179.97438 * 26 5 4 54 54 H 1.09001 * 109.47223 * 300.00389 * 27 26 5 55 55 H 1.08999 * 109.47130 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0805 0.7209 1.2484 6 6 3.5710 1.4420 2.4979 7 6 5.5876 0.7214 1.2481 8 8 6.1936 1.3416 0.4002 9 7 6.2618 0.0326 2.1901 10 6 7.7262 -0.0727 2.1359 11 6 8.3036 0.3872 3.4783 12 6 7.6571 -0.4161 4.6092 13 8 7.9037 -1.8089 4.4051 14 6 8.2562 0.0166 5.9489 15 7 7.6379 -0.7527 7.0315 16 6 8.0180 -0.5360 8.3291 17 1 8.7739 0.2017 8.5543 18 6 7.4319 -1.2646 9.3550 19 7 6.5110 -2.1641 9.0805 20 14 7.9509 -0.9695 11.1249 21 1 7.6823 0.4446 11.4904 22 1 7.1806 -1.8671 12.0229 23 1 9.4018 -1.2508 11.2688 24 6 6.1481 -0.1617 4.6195 25 6 5.5463 -0.6279 3.2903 26 6 3.5705 -0.7216 1.2483 27 6 2.0405 -0.7215 1.2489 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9334 2.4700 -0.0002 35 1 3.9331 0.9286 -0.8908 36 1 3.7108 2.5165 2.3796 37 1 2.5115 1.2263 2.6352 38 1 4.1279 1.0969 3.3690 39 1 8.1090 0.5623 1.3369 40 1 8.0138 -1.1075 1.9498 41 1 8.0949 1.4476 3.6200 42 1 9.3813 0.2243 3.4864 43 1 7.5222 -2.3798 5.0860 44 1 9.3309 -0.1651 5.9419 45 1 8.0682 1.0789 6.1048 46 1 6.9588 -1.4151 6.8293 47 1 6.1016 -2.6735 9.7973 48 1 5.6912 -0.7158 5.4395 49 1 5.9597 0.9039 4.7504 50 1 4.4905 -0.3592 3.2530 51 1 5.6517 -1.7088 3.1981 52 1 3.9335 -1.2353 0.3581 53 1 3.9345 -1.2357 2.1379 54 1 1.6775 -0.2078 2.1391 55 1 1.6771 -1.7491 1.2493 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733888007.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:19 Heat of formation + Delta-G solvation = -102.247798 kcal Electronic energy + Delta-G solvation = -32042.114822 eV Core-core repulsion = 28077.863339 eV Total energy + Delta-G solvation = -3964.251483 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.23330 -40.28557 -39.00206 -36.91823 -35.79957 -34.77287 -33.43071 -32.46686 -31.85565 -31.53595 -29.16655 -28.36622 -26.72187 -25.54884 -24.75753 -23.77664 -23.42242 -22.28421 -21.39006 -20.31965 -19.59983 -19.42756 -17.90262 -17.34093 -17.25283 -16.73458 -16.40464 -15.95810 -15.85923 -15.64969 -15.48036 -15.29328 -15.01564 -14.84988 -14.65665 -14.41311 -14.27193 -14.19346 -13.63956 -13.54370 -13.44568 -13.32567 -13.08265 -13.00647 -12.84865 -12.74283 -12.62355 -12.42794 -12.38607 -12.25358 -12.13912 -12.06615 -11.95677 -11.88215 -11.73935 -11.53755 -11.31500 -11.05268 -10.96353 -10.88487 -10.71385 -10.39449 -9.63862 -9.01870 -7.96259 -5.24366 1.48845 1.50031 1.56220 1.58665 1.98669 2.55215 3.24339 3.33891 3.41095 3.61246 3.64208 3.71826 3.74666 3.88707 3.98994 4.08578 4.13844 4.16597 4.22920 4.27171 4.31404 4.42915 4.43899 4.55393 4.58056 4.60979 4.65550 4.74063 4.75687 4.76681 4.82424 4.87492 4.90326 4.95952 4.99196 5.04221 5.05870 5.07040 5.10295 5.17662 5.19593 5.21024 5.29031 5.30544 5.43067 5.46519 5.47880 5.49496 5.55036 5.67078 6.25516 6.41451 6.74369 7.13448 7.33980 8.03990 8.30360 9.26009 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015730 B = 0.002805 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.596553 B = 9980.483729 C =11074.680892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.109 4.109 4 C -0.089 4.089 5 C -0.069 4.069 6 C -0.158 4.158 7 C 0.518 3.482 8 O -0.585 6.585 9 N -0.601 5.601 10 C 0.121 3.879 11 C -0.111 4.111 12 C 0.139 3.861 13 O -0.562 6.562 14 C 0.129 3.871 15 N -0.734 5.734 16 C -0.249 4.249 17 H 0.069 0.931 18 C -0.065 4.065 19 N -0.961 5.961 20 Si 0.968 3.032 21 H -0.280 1.280 22 H -0.293 1.293 23 H -0.282 1.282 24 C -0.151 4.151 25 C 0.099 3.901 26 C -0.122 4.122 27 C -0.112 4.112 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.382 0.618 44 H 0.018 0.982 45 H 0.025 0.975 46 H 0.378 0.622 47 H 0.253 0.747 48 H 0.077 0.923 49 H 0.072 0.928 50 H 0.126 0.874 51 H 0.079 0.921 52 H 0.058 0.942 53 H 0.087 0.913 54 H 0.078 0.922 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.523 4.085 -18.608 22.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.146 4.146 4 C -0.127 4.127 5 C -0.072 4.072 6 C -0.215 4.215 7 C 0.308 3.692 8 O -0.466 6.466 9 N -0.333 5.333 10 C -0.002 4.002 11 C -0.149 4.149 12 C 0.098 3.902 13 O -0.369 6.369 14 C 0.002 3.998 15 N -0.379 5.379 16 C -0.381 4.381 17 H 0.087 0.913 18 C -0.258 4.258 19 N -0.611 5.611 20 Si 0.797 3.203 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.208 1.208 24 C -0.190 4.190 25 C -0.023 4.023 26 C -0.160 4.160 27 C -0.149 4.149 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.231 0.769 44 H 0.036 0.964 45 H 0.043 0.957 46 H 0.212 0.788 47 H 0.062 0.938 48 H 0.095 0.905 49 H 0.090 0.910 50 H 0.143 0.857 51 H 0.097 0.903 52 H 0.077 0.923 53 H 0.105 0.895 54 H 0.096 0.904 55 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.787 4.705 -19.442 22.726 hybrid contribution 0.332 -0.320 1.641 1.705 sum -10.455 4.384 -17.801 21.104 Atomic orbital electron populations 1.21803 0.94289 1.02034 1.02077 1.21143 0.96063 0.95603 0.98241 1.21617 0.93211 0.97024 1.02789 1.21319 0.96511 0.99566 0.95271 1.20734 0.88786 0.98829 0.98863 1.22297 1.03597 1.00377 0.95242 1.21229 0.91098 0.76981 0.79859 1.90627 1.71330 1.44703 1.39915 1.48117 1.07198 1.51813 1.26162 1.21419 0.79554 1.01948 0.97242 1.21802 1.01089 0.99070 0.92966 1.21205 0.93866 0.82093 0.93066 1.86379 1.80638 1.16528 1.53346 1.21428 0.95617 0.94791 0.88006 1.42348 1.47509 1.46036 1.02006 1.19483 1.17093 1.16715 0.84814 0.91316 1.25427 0.99633 0.99195 1.01542 1.69742 1.30942 1.27999 1.32399 0.85303 0.77397 0.77201 0.80368 1.20649 1.21938 1.20836 1.22458 0.95840 1.02702 0.97952 1.22393 0.97991 0.97789 0.84091 1.21985 0.97601 0.93060 1.03322 1.21661 0.93218 1.01406 0.98643 0.92534 0.92364 0.92257 0.91886 0.90798 0.91294 0.92690 0.92997 0.92284 0.88586 0.91287 0.90003 0.90783 0.90219 0.89631 0.76934 0.96362 0.95697 0.78830 0.93827 0.90487 0.90964 0.85652 0.90327 0.92324 0.89528 0.90386 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.19 71.98 0.66 -0.83 16 2 C -0.09 -1.16 2.72 -10.79 -0.03 -1.19 16 3 C -0.11 -1.52 4.94 30.59 0.15 -1.37 16 4 C -0.09 -1.73 3.99 30.60 0.12 -1.61 16 5 C -0.07 -1.35 0.49 -52.93 -0.03 -1.38 16 6 C -0.16 -2.71 7.23 71.98 0.52 -2.19 16 7 C 0.52 13.83 6.48 87.66 0.57 14.40 16 8 O -0.59 -19.79 15.40 -3.01 -0.05 -19.83 16 9 N -0.60 -15.07 2.96 -818.97 -2.42 -17.50 16 10 C 0.12 3.19 6.20 86.36 0.54 3.73 16 11 C -0.11 -2.99 5.11 30.67 0.16 -2.83 16 12 C 0.14 4.23 0.71 -10.77 -0.01 4.22 16 13 O -0.56 -17.80 11.71 -148.98 -1.74 -19.54 16 14 C 0.13 4.95 5.40 86.38 0.47 5.41 16 15 N -0.73 -34.47 5.07 -343.45 -1.74 -36.21 16 16 C -0.25 -13.37 9.99 84.03 0.84 -12.53 16 17 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 18 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 19 N -0.96 -55.09 13.06 21.65 0.28 -54.80 16 20 Si 0.97 44.63 29.55 68.60 2.03 46.66 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 C -0.15 -4.15 4.74 30.66 0.15 -4.00 16 25 C 0.10 2.21 3.61 86.35 0.31 2.53 16 26 C -0.12 -2.01 4.36 30.60 0.13 -1.88 16 27 C -0.11 -1.42 4.94 30.60 0.15 -1.27 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.93 6.78 -2.39 -0.02 0.92 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.05 1.22 8.03 -2.38 -0.02 1.20 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.06 1.06 8.06 -2.38 -0.02 1.05 16 37 H 0.10 1.25 4.97 -2.39 -0.01 1.24 16 38 H 0.07 1.26 4.77 -2.39 -0.01 1.25 16 39 H 0.08 2.28 7.00 -2.39 -0.02 2.26 16 40 H 0.07 1.97 7.81 -2.39 -0.02 1.96 16 41 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.38 12.25 7.85 -74.06 -0.58 11.67 16 44 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.38 17.99 5.58 -92.71 -0.52 17.47 16 47 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 48 H 0.08 2.39 6.83 -2.39 -0.02 2.37 16 49 H 0.07 2.00 7.92 -2.39 -0.02 1.98 16 50 H 0.13 2.32 2.77 -2.39 -0.01 2.31 16 51 H 0.08 1.75 7.69 -2.39 -0.02 1.73 16 52 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 53 H 0.09 1.38 4.48 -2.39 -0.01 1.37 16 54 H 0.08 0.89 6.14 -2.39 -0.01 0.87 16 55 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -64.13 395.20 1.32 -62.81 By element: Atomic # 1 Polarization: 42.49 SS G_CDS: -0.20 Total: 42.29 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 5.17 Total: -3.87 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -3.88 Total: -108.52 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -1.79 Total: -39.37 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -64.13 1.32 -62.81 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733888007.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.438 kcal (2) G-P(sol) polarization free energy of solvation -64.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds