Wall clock time and date at job start Tue Mar 31 2020 22:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 110.91245 * 2 1 4 4 C 1.54376 * 110.84626 * 123.58950 * 2 1 3 5 5 O 1.43250 * 107.59027 * 139.54301 * 4 2 1 6 6 C 1.43643 * 109.96507 * 1.70987 * 5 4 2 7 7 H 1.08998 * 110.30884 * 94.59196 * 6 5 4 8 8 C 1.53001 * 110.30837 * 216.65291 * 6 5 4 9 9 C 1.53004 * 109.47320 * 292.21559 * 8 6 5 10 10 C 1.50704 * 109.46744 * 179.97438 * 9 8 6 11 11 O 1.21273 * 120.00144 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99475 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99830 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47099 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47041 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.46963 * 179.97438 * 15 14 13 17 17 C 1.36940 * 120.00019 * 89.99935 * 16 15 14 18 18 H 1.07995 * 119.99910 * 215.42427 * 17 16 15 19 19 C 1.38811 * 119.99893 * 35.14788 * 17 16 15 20 20 N 1.31625 * 119.99957 * 23.81716 * 19 17 16 21 21 Si 1.86794 * 119.99967 * 203.82791 * 19 17 16 22 22 H 1.48502 * 109.47405 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47480 * 119.99893 * 21 19 17 24 24 H 1.48509 * 109.46854 * 239.99891 * 21 19 17 25 25 C 1.46501 * 119.99869 * 269.99776 * 16 15 14 26 26 C 1.53002 * 117.49778 * 192.09500 * 25 16 15 27 27 C 1.52997 * 59.99985 * 252.51586 * 26 25 16 28 28 C 1.54941 * 105.22597 * 335.62094 * 6 5 4 29 29 H 1.09001 * 109.46408 * 297.86766 * 1 2 3 30 30 H 1.09003 * 109.46927 * 57.86477 * 1 2 3 31 31 H 1.08997 * 109.47324 * 177.86707 * 1 2 3 32 32 H 1.09002 * 109.47014 * 182.12854 * 3 2 1 33 33 H 1.08995 * 109.47545 * 302.13700 * 3 2 1 34 34 H 1.09003 * 109.46717 * 62.13612 * 3 2 1 35 35 H 1.08999 * 109.83312 * 20.03116 * 4 2 1 36 36 H 1.08998 * 109.83120 * 259.05256 * 4 2 1 37 37 H 1.08998 * 109.47204 * 172.20624 * 8 6 5 38 38 H 1.09005 * 109.46810 * 52.21212 * 8 6 5 39 39 H 1.09000 * 109.47294 * 59.99652 * 9 8 6 40 40 H 1.08996 * 109.46644 * 299.99713 * 9 8 6 41 41 H 0.96995 * 119.99997 * 0.02562 * 12 10 9 42 42 H 1.08998 * 109.47119 * 59.99675 * 13 12 10 43 43 H 1.09005 * 109.47115 * 300.00128 * 13 12 10 44 44 H 1.09000 * 109.47294 * 59.99891 * 14 13 12 45 45 H 1.08996 * 109.46644 * 299.99952 * 14 13 12 46 46 H 1.09000 * 109.47146 * 59.99824 * 15 14 13 47 47 H 1.09005 * 109.47163 * 299.99699 * 15 14 13 48 48 H 0.96994 * 119.99599 * 184.52707 * 20 19 17 49 49 H 1.08993 * 115.54961 * 337.80822 * 25 16 15 50 50 H 1.08997 * 117.49603 * 0.02562 * 26 25 16 51 51 H 1.08996 * 117.50067 * 145.02231 * 26 25 16 52 52 H 1.09006 * 117.49926 * 252.50943 * 27 26 25 53 53 H 1.09003 * 117.50206 * 107.49488 * 27 26 25 54 54 H 1.09003 * 111.12107 * 154.31808 * 28 6 5 55 55 H 1.09003 * 111.12694 * 278.47246 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0761 1.4292 0.0000 4 6 2.0794 -0.7982 1.2018 5 8 3.2044 -1.5555 0.7406 6 6 3.4463 -1.2784 -0.6479 7 1 4.1948 -0.4929 -0.7521 8 6 3.9048 -2.5467 -1.3705 9 6 5.2910 -2.9497 -0.8635 10 6 5.7423 -4.1993 -1.5749 11 8 5.0256 -4.7168 -2.4051 12 7 6.9424 -4.7417 -1.2882 13 6 7.3814 -5.9561 -1.9801 14 6 8.7675 -6.3592 -1.4730 15 6 9.2257 -7.6279 -2.1951 16 7 10.5531 -8.0135 -1.7100 17 6 10.6719 -8.8564 -0.6373 18 1 11.4795 -8.7232 0.0672 19 6 9.7510 -9.8784 -0.4524 20 7 9.0735 -10.3474 -1.4788 21 14 9.4730 -10.5879 1.2530 22 1 10.3521 -9.8931 2.2276 23 1 8.0529 -10.3972 1.6431 24 1 9.7936 -12.0379 1.2442 25 6 11.7535 -7.4974 -2.3725 26 6 13.0923 -8.1453 -2.0138 27 6 12.7645 -6.7380 -1.5111 28 6 2.0839 -0.8014 -1.2110 29 1 -0.3632 0.4804 0.9085 30 1 -0.3633 0.5467 -0.8703 31 1 -0.3634 -1.0269 -0.0382 32 1 3.1651 1.4020 -0.0382 33 1 1.6952 1.9637 -0.8701 34 1 1.7571 1.9399 0.9086 35 1 1.3107 -1.4716 1.5810 36 1 2.3930 -0.1124 1.9889 37 1 3.9510 -2.3573 -2.4429 38 1 3.1976 -3.3526 -1.1740 39 1 5.2448 -3.1391 0.2089 40 1 5.9981 -2.1439 -1.0600 41 1 7.5154 -4.3280 -0.6239 42 1 7.4272 -5.7668 -3.0526 43 1 6.6743 -6.7621 -1.7834 44 1 8.7212 -6.5486 -0.4006 45 1 9.4746 -5.5534 -1.6694 46 1 9.2719 -7.4389 -3.2676 47 1 8.5183 -8.4336 -1.9983 48 1 8.3836 -11.0150 -1.3402 49 1 11.6157 -7.1619 -3.4004 50 1 13.0798 -8.9559 -1.2852 51 1 13.8356 -8.2365 -2.8057 52 1 13.2922 -5.9031 -1.9723 53 1 12.5366 -6.6224 -0.4514 54 1 2.2217 -0.1579 -2.0799 55 1 1.4393 -1.6474 -1.4493 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752284449.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:54 Heat of formation + Delta-G solvation = -82.201937 kcal Electronic energy + Delta-G solvation = -29133.681088 eV Core-core repulsion = 25170.298859 eV Total energy + Delta-G solvation = -3963.382229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.10517 -40.53061 -38.88569 -36.70707 -35.69055 -35.25857 -34.46764 -33.30750 -31.33313 -30.09653 -28.26293 -27.36960 -26.96025 -25.77595 -24.45517 -22.93296 -22.46487 -21.99281 -21.64664 -21.17965 -20.17863 -18.30001 -17.98137 -17.61355 -17.36638 -16.79015 -16.73052 -16.49632 -16.14101 -15.93271 -15.64592 -15.32253 -15.04640 -14.80025 -14.53916 -14.47267 -14.14931 -13.89417 -13.72300 -13.62286 -13.51517 -13.22151 -13.03405 -12.78102 -12.72203 -12.64773 -12.50506 -12.37064 -12.27205 -12.19362 -12.12559 -12.04561 -11.97971 -11.64717 -11.60555 -11.59192 -11.31821 -11.25308 -10.93198 -10.81128 -10.42262 -10.37788 -10.07271 -8.55325 -7.79265 -5.45335 1.41638 1.46448 1.55003 1.66782 2.24043 2.48721 2.87513 3.13860 3.39583 3.44153 3.51035 3.67900 3.82241 3.85268 4.01598 4.12215 4.18038 4.24117 4.30160 4.32118 4.33301 4.44837 4.47666 4.53084 4.55271 4.63563 4.72280 4.74362 4.76061 4.76320 4.82851 4.84513 4.96481 4.96860 4.98720 5.00064 5.05651 5.06476 5.12179 5.13895 5.19452 5.27293 5.31308 5.35131 5.44152 5.47226 5.49570 5.56267 5.66673 5.81165 6.12735 6.42891 6.59931 7.13924 7.28486 7.85496 8.34811 9.09448 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016555 B = 0.001791 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.892553 B =15633.552842 C =16347.890962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.098 4.098 3 C -0.136 4.136 4 C 0.052 3.948 5 O -0.401 6.401 6 C 0.083 3.917 7 H 0.087 0.913 8 C -0.098 4.098 9 C -0.127 4.127 10 C 0.504 3.496 11 O -0.592 6.592 12 N -0.719 5.719 13 C 0.133 3.867 14 C -0.120 4.120 15 C 0.149 3.851 16 N -0.566 5.566 17 C -0.253 4.253 18 H 0.057 0.943 19 C -0.037 4.037 20 N -0.912 5.912 21 Si 0.948 3.052 22 H -0.268 1.268 23 H -0.290 1.290 24 H -0.293 1.293 25 C 0.098 3.902 26 C -0.199 4.199 27 C -0.199 4.199 28 C -0.143 4.143 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.104 0.896 40 H 0.121 0.879 41 H 0.414 0.586 42 H 0.060 0.940 43 H 0.039 0.961 44 H 0.051 0.949 45 H 0.070 0.930 46 H 0.033 0.967 47 H 0.064 0.936 48 H 0.250 0.750 49 H 0.104 0.896 50 H 0.070 0.930 51 H 0.101 0.899 52 H 0.107 0.893 53 H 0.070 0.930 54 H 0.097 0.903 55 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.444 26.169 2.283 29.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.098 4.098 3 C -0.194 4.194 4 C -0.024 4.024 5 O -0.321 6.321 6 C 0.026 3.974 7 H 0.104 0.896 8 C -0.136 4.136 9 C -0.166 4.166 10 C 0.292 3.708 11 O -0.473 6.473 12 N -0.371 5.371 13 C 0.008 3.992 14 C -0.160 4.160 15 C 0.022 3.978 16 N -0.283 5.283 17 C -0.383 4.383 18 H 0.074 0.926 19 C -0.234 4.234 20 N -0.556 5.556 21 Si 0.776 3.224 22 H -0.192 1.192 23 H -0.216 1.216 24 H -0.220 1.220 25 C -0.010 4.010 26 C -0.238 4.238 27 C -0.240 4.240 28 C -0.180 4.180 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.123 0.877 40 H 0.139 0.861 41 H 0.251 0.749 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.051 0.949 47 H 0.082 0.918 48 H 0.060 0.940 49 H 0.121 0.879 50 H 0.089 0.911 51 H 0.119 0.881 52 H 0.125 0.875 53 H 0.089 0.911 54 H 0.116 0.884 55 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.913 25.461 1.799 28.605 hybrid contribution -0.073 -0.923 1.024 1.380 sum -12.986 24.539 2.823 27.906 Atomic orbital electron populations 1.21748 0.92434 1.02130 1.02928 1.22146 0.97242 0.96457 0.93981 1.21820 1.00966 0.93633 1.02931 1.23387 0.88140 0.94207 0.96648 1.88396 1.49984 1.67911 1.25834 1.23053 0.97463 0.96097 0.80775 0.89553 1.21443 0.95245 0.96889 1.00065 1.21639 0.98921 0.94523 1.01563 1.21456 0.80532 0.86565 0.82204 1.90669 1.55246 1.64900 1.36445 1.46064 1.19454 1.28165 1.43372 1.21091 0.95495 0.86140 0.96454 1.22070 0.93961 0.99390 1.00585 1.20756 0.87715 0.94961 0.94349 1.43578 0.99865 1.51135 1.33753 1.19094 1.13089 1.05653 1.00509 0.92583 1.25714 1.01959 0.96075 0.99672 1.70216 1.25785 1.29860 1.29703 0.85530 0.77527 0.77638 0.81695 1.19189 1.21649 1.22038 1.21427 0.83916 1.00892 0.94774 1.23071 1.00360 0.96334 1.04044 1.23314 1.06133 0.94373 1.00142 1.23439 0.95639 1.00296 0.98669 0.91489 0.91387 0.92823 0.92519 0.91306 0.91573 0.91663 0.90726 0.90002 0.92878 0.87734 0.86059 0.74924 0.92157 0.94216 0.93061 0.91141 0.94894 0.91836 0.94049 0.87865 0.91109 0.88101 0.87501 0.91121 0.88413 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.51 71.98 0.61 -0.61 16 2 C -0.10 -1.07 0.95 -50.88 -0.05 -1.12 16 3 C -0.14 -1.13 8.46 71.98 0.61 -0.52 16 4 C 0.05 0.76 7.00 72.45 0.51 1.27 16 5 O -0.40 -7.85 10.75 -148.98 -1.60 -9.45 16 6 C 0.08 1.30 3.11 31.26 0.10 1.40 16 7 H 0.09 1.10 7.76 -2.39 -0.02 1.08 16 8 C -0.10 -1.95 4.24 30.60 0.13 -1.82 16 9 C -0.13 -2.45 5.62 29.85 0.17 -2.29 16 10 C 0.50 14.32 7.83 87.66 0.69 15.01 16 11 O -0.59 -22.14 15.98 -3.01 -0.05 -22.18 16 12 N -0.72 -19.57 5.56 -463.05 -2.57 -22.14 16 13 C 0.13 4.50 5.67 86.38 0.49 4.99 16 14 C -0.12 -4.35 5.65 30.60 0.17 -4.18 16 15 C 0.15 6.72 5.34 86.38 0.46 7.18 16 16 N -0.57 -27.18 2.80 -678.04 -1.90 -29.08 16 17 C -0.25 -13.47 8.17 84.03 0.69 -12.78 16 18 H 0.06 3.02 7.19 -2.91 -0.02 3.00 16 19 C -0.04 -2.02 4.91 84.86 0.42 -1.60 16 20 N -0.91 -53.02 11.45 21.65 0.25 -52.78 16 21 Si 0.95 44.52 29.62 68.60 2.03 46.55 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 25 C 0.10 3.99 6.61 44.99 0.30 4.29 16 26 C -0.20 -7.61 9.79 30.59 0.30 -7.31 16 27 C -0.20 -6.94 10.14 30.59 0.31 -6.63 16 28 C -0.14 -1.83 5.54 32.09 0.18 -1.65 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.56 8.12 -2.39 -0.02 0.54 16 32 H 0.06 0.51 7.50 -2.39 -0.02 0.49 16 33 H 0.07 0.46 8.14 -2.39 -0.02 0.45 16 34 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.07 0.96 7.81 -2.39 -0.02 0.94 16 36 H 0.07 0.94 7.84 -2.39 -0.02 0.92 16 37 H 0.08 1.62 8.10 -2.39 -0.02 1.60 16 38 H 0.05 1.31 8.10 -2.38 -0.02 1.29 16 39 H 0.10 1.96 7.95 -2.39 -0.02 1.94 16 40 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.41 8.75 8.47 -92.71 -0.79 7.97 16 42 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 44 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.03 1.41 8.04 -2.39 -0.02 1.39 16 47 H 0.06 3.37 5.44 -2.38 -0.01 3.36 16 48 H 0.25 14.15 8.32 -92.71 -0.77 13.38 16 49 H 0.10 3.82 8.10 -2.39 -0.02 3.80 16 50 H 0.07 3.10 6.82 -2.39 -0.02 3.08 16 51 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 52 H 0.11 3.01 8.14 -2.38 -0.02 2.99 16 53 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 54 H 0.10 0.97 8.04 -2.39 -0.02 0.95 16 55 H 0.07 1.07 7.94 -2.39 -0.02 1.05 16 Total: -1.00 -68.19 434.25 2.29 -65.90 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.05 Total: 29.55 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 6.07 Total: -6.37 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -4.22 Total: -103.99 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -1.65 Total: -31.64 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -68.19 2.29 -65.90 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752284449.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.297 kcal (2) G-P(sol) polarization free energy of solvation -68.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds