Wall clock time and date at job start Tue Mar 31 2020 22:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 110.75436 * 2 1 4 4 C 1.54378 * 110.85094 * 123.47781 * 2 1 3 5 5 O 1.43236 * 107.58837 * 96.83369 * 4 2 1 6 6 C 1.43643 * 109.97301 * 358.28719 * 5 4 2 7 7 H 1.09007 * 110.31049 * 265.51589 * 6 5 4 8 8 C 1.53003 * 110.30962 * 143.44733 * 6 5 4 9 9 C 1.53000 * 109.47366 * 66.45388 * 8 6 5 10 10 C 1.50696 * 109.46576 * 179.97438 * 9 8 6 11 11 O 1.21273 * 120.00897 * 0.02562 * 10 9 8 12 12 N 1.34786 * 119.99317 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99680 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46938 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.47182 * 179.97438 * 14 13 12 16 16 N 1.46495 * 109.47273 * 179.97438 * 15 14 13 17 17 C 1.36940 * 119.99678 * 90.00223 * 16 15 14 18 18 H 1.08003 * 120.00410 * 304.38361 * 17 16 15 19 19 C 1.38812 * 119.99920 * 124.37961 * 17 16 15 20 20 N 1.31620 * 120.00204 * 164.94729 * 19 17 16 21 21 Si 1.86804 * 120.00139 * 344.94304 * 19 17 16 22 22 H 1.48498 * 109.47148 * 92.13578 * 21 19 17 23 23 H 1.48496 * 109.47482 * 212.14030 * 21 19 17 24 24 H 1.48504 * 109.47078 * 332.14299 * 21 19 17 25 25 C 1.46495 * 120.00616 * 270.00494 * 16 15 14 26 26 C 1.53002 * 117.50125 * 183.04253 * 25 16 15 27 27 C 1.53000 * 60.00094 * 252.51139 * 26 25 16 28 28 C 1.55313 * 110.84511 * 236.53554 * 2 1 3 29 29 H 1.08996 * 109.47921 * 60.69454 * 1 2 3 30 30 H 1.09001 * 109.46910 * 300.69590 * 1 2 3 31 31 H 1.09002 * 109.47499 * 180.70337 * 1 2 3 32 32 H 1.09008 * 109.46418 * 59.30404 * 3 2 1 33 33 H 1.08997 * 109.47607 * 179.30220 * 3 2 1 34 34 H 1.09004 * 109.47526 * 299.30908 * 3 2 1 35 35 H 1.08996 * 109.83109 * 216.34303 * 4 2 1 36 36 H 1.09002 * 109.83127 * 337.31897 * 4 2 1 37 37 H 1.08999 * 109.46879 * 186.45402 * 8 6 5 38 38 H 1.08999 * 109.46897 * 306.45082 * 8 6 5 39 39 H 1.09002 * 109.46731 * 300.00175 * 9 8 6 40 40 H 1.09004 * 109.47017 * 60.00304 * 9 8 6 41 41 H 0.97000 * 120.00202 * 0.02562 * 12 10 9 42 42 H 1.08999 * 109.47039 * 300.00105 * 13 12 10 43 43 H 1.08999 * 109.47163 * 60.00047 * 13 12 10 44 44 H 1.08999 * 109.47133 * 299.99793 * 14 13 12 45 45 H 1.09004 * 109.47017 * 60.00239 * 14 13 12 46 46 H 1.09001 * 109.47440 * 300.00646 * 15 14 13 47 47 H 1.09004 * 109.46614 * 60.00403 * 15 14 13 48 48 H 0.97001 * 119.99739 * 179.97438 * 20 19 17 49 49 H 1.09001 * 115.55227 * 328.75531 * 25 16 15 50 50 H 1.08995 * 117.49949 * 359.97438 * 26 25 16 51 51 H 1.09001 * 117.49509 * 145.02206 * 26 25 16 52 52 H 1.08999 * 117.49706 * 252.51025 * 27 26 25 53 53 H 1.08992 * 117.49896 * 107.49007 * 27 26 25 54 54 H 1.08995 * 111.12504 * 33.85725 * 28 2 1 55 55 H 1.08997 * 111.12489 * 158.02128 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0721 1.4307 0.0000 4 6 2.0794 -0.7958 1.2033 5 8 2.3853 -2.1178 0.7447 6 6 2.0401 -2.2476 -0.6436 7 1 1.0384 -2.6649 -0.7471 8 6 3.0599 -3.1321 -1.3640 9 6 2.9618 -4.5624 -0.8299 10 6 3.9658 -5.4335 -1.5399 11 8 4.6889 -4.9573 -2.3890 12 7 4.0609 -6.7419 -1.2304 13 6 5.0372 -7.5887 -1.9202 14 6 4.9391 -9.0191 -1.3862 15 6 5.9584 -9.9037 -2.1070 16 7 5.8649 -11.2732 -1.5953 17 6 5.0132 -12.1681 -2.1860 18 1 3.9637 -11.9320 -2.2825 19 6 5.4987 -13.3787 -2.6608 20 7 4.6639 -14.3534 -2.9533 21 14 7.3368 -13.6247 -2.8850 22 1 7.9116 -14.2144 -1.6493 23 1 7.5780 -14.5402 -4.0290 24 1 7.9822 -12.3147 -3.1547 25 6 6.6824 -11.6853 -0.4517 26 6 6.5926 -13.1473 -0.0093 27 6 5.9533 -12.0494 0.8433 28 6 2.0826 -0.8004 -1.2109 29 1 -0.3635 0.5030 -0.8961 30 1 -0.3633 0.5246 0.8837 31 1 -0.3634 -1.0276 0.0126 32 1 1.7102 1.9563 0.8838 33 1 3.1617 1.4064 0.0125 34 1 1.7305 1.9488 -0.8961 35 1 2.9828 -0.3174 1.5815 36 1 1.3269 -0.8424 1.9906 37 1 2.8520 -3.1287 -2.4340 38 1 4.0640 -2.7464 -1.1877 39 1 3.1696 -4.5657 0.2402 40 1 1.9577 -4.9481 -1.0062 41 1 3.4828 -7.1228 -0.5509 42 1 4.8292 -7.5856 -2.9901 43 1 6.0414 -7.2029 -1.7442 44 1 5.1470 -9.0226 -0.3162 45 1 3.9349 -9.4047 -1.5626 46 1 5.7503 -9.9002 -3.1770 47 1 6.9627 -9.5182 -1.9310 48 1 5.0032 -15.1993 -3.2855 49 1 7.6497 -11.1908 -0.3626 50 1 5.9249 -13.8023 -0.5689 51 1 7.5009 -13.6148 0.3706 52 1 6.4412 -11.7947 1.7841 53 1 4.8655 -11.9822 0.8443 54 1 1.4333 -0.6959 -2.0801 55 1 3.1035 -0.5004 -1.4471 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752284450.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:59 Heat of formation + Delta-G solvation = -79.129387 kcal Electronic energy + Delta-G solvation = -29020.389351 eV Core-core repulsion = 25057.140357 eV Total energy + Delta-G solvation = -3963.248993 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.08684 -40.52063 -39.14552 -36.74037 -35.69069 -34.85171 -34.44753 -33.99994 -31.64147 -30.12200 -28.25707 -27.38852 -26.94472 -25.65595 -24.42549 -23.21129 -22.53880 -21.99997 -21.62867 -21.13173 -20.16125 -18.76394 -17.97574 -17.62371 -17.23263 -16.86307 -16.61742 -16.52409 -16.30622 -15.89759 -15.57711 -15.23394 -15.09178 -15.03617 -14.61314 -14.55492 -14.13778 -13.96393 -13.82111 -13.76549 -13.62409 -13.42854 -13.04446 -12.85003 -12.72145 -12.70760 -12.50098 -12.41751 -12.29721 -12.23561 -12.10596 -12.03799 -11.83841 -11.64403 -11.59362 -11.55727 -11.31354 -11.25687 -10.85611 -10.83225 -10.46993 -10.41455 -10.05611 -8.37987 -8.12503 -5.86078 1.42435 1.45702 1.57999 1.67528 2.25212 2.46583 2.87763 3.01872 3.19852 3.40004 3.41235 3.67128 3.83229 3.85481 4.01967 4.11350 4.14521 4.18680 4.26470 4.30116 4.33338 4.35382 4.42921 4.48297 4.54074 4.57128 4.67537 4.72901 4.75114 4.76197 4.83508 4.84088 4.86175 4.93609 4.96441 4.97698 5.00238 5.01380 5.06156 5.13554 5.20044 5.27240 5.30476 5.31596 5.35199 5.43955 5.46122 5.52156 5.57883 5.99580 6.12647 6.29212 6.59382 7.12645 7.28098 7.59502 8.11080 8.95709 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.028184 B = 0.001568 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.224661 B =17855.854070 C =18087.573855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 C -0.135 4.135 4 C 0.053 3.947 5 O -0.399 6.399 6 C 0.082 3.918 7 H 0.083 0.917 8 C -0.097 4.097 9 C -0.129 4.129 10 C 0.507 3.493 11 O -0.590 6.590 12 N -0.721 5.721 13 C 0.130 3.870 14 C -0.125 4.125 15 C 0.148 3.852 16 N -0.585 5.585 17 C -0.273 4.273 18 H 0.026 0.974 19 C 0.012 3.988 20 N -0.945 5.945 21 Si 0.942 3.058 22 H -0.250 1.250 23 H -0.315 1.315 24 H -0.264 1.264 25 C 0.099 3.901 26 C -0.217 4.217 27 C -0.190 4.190 28 C -0.142 4.142 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.413 0.587 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.050 0.950 46 H 0.043 0.957 47 H 0.062 0.938 48 H 0.264 0.736 49 H 0.118 0.882 50 H 0.080 0.920 51 H 0.097 0.903 52 H 0.110 0.890 53 H 0.067 0.933 54 H 0.095 0.905 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.824 30.112 9.350 32.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 C -0.192 4.192 4 C -0.023 4.023 5 O -0.319 6.319 6 C 0.025 3.975 7 H 0.100 0.900 8 C -0.135 4.135 9 C -0.169 4.169 10 C 0.295 3.705 11 O -0.470 6.470 12 N -0.373 5.373 13 C 0.005 3.995 14 C -0.165 4.165 15 C 0.023 3.977 16 N -0.305 5.305 17 C -0.403 4.403 18 H 0.043 0.957 19 C -0.187 4.187 20 N -0.587 5.587 21 Si 0.769 3.231 22 H -0.174 1.174 23 H -0.244 1.244 24 H -0.188 1.188 25 C -0.007 4.007 26 C -0.255 4.255 27 C -0.230 4.230 28 C -0.180 4.180 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.126 0.874 40 H 0.133 0.867 41 H 0.250 0.750 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.080 0.920 48 H 0.073 0.927 49 H 0.136 0.864 50 H 0.098 0.902 51 H 0.115 0.885 52 H 0.128 0.872 53 H 0.086 0.914 54 H 0.113 0.887 55 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.241 30.127 8.788 31.817 hybrid contribution 0.137 -0.990 -0.254 1.031 sum -5.104 29.138 8.534 30.787 Atomic orbital electron populations 1.21824 0.92518 1.02187 1.02902 1.22130 0.97095 0.96572 0.94131 1.21751 1.00773 0.93824 1.02884 1.23376 1.00033 0.82338 0.96540 1.88382 1.86133 1.31636 1.25764 1.23145 0.97775 0.95706 0.80856 0.89965 1.21425 0.99364 0.92929 0.99812 1.21634 0.99063 0.94417 1.01743 1.21353 0.84264 0.82552 0.82347 1.90667 1.46535 1.74512 1.35332 1.46078 1.39904 1.09096 1.42235 1.21167 0.92433 0.89640 0.96245 1.22082 1.00824 0.92559 1.01047 1.20943 0.97157 0.83291 0.96357 1.43626 1.47074 1.08551 1.31277 1.18274 0.89424 0.98077 1.34531 0.95651 1.26444 1.01551 0.96079 0.94616 1.69985 1.36877 1.04433 1.47374 0.85872 0.82199 0.77751 0.77277 1.17446 1.24422 1.18813 1.21597 0.95369 0.95712 0.88066 1.23421 1.03021 0.93325 1.05723 1.23311 0.99319 1.04082 0.96316 1.23504 1.02461 0.93471 0.98530 0.91439 0.91539 0.92676 0.91494 0.92623 0.91539 0.91395 0.90838 0.90260 0.92403 0.87417 0.86732 0.75036 0.92948 0.91790 0.91004 0.93161 0.93808 0.91979 0.92711 0.86434 0.90213 0.88502 0.87217 0.91404 0.88652 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.44 71.98 0.61 -0.48 16 2 C -0.10 -0.98 0.94 -50.92 -0.05 -1.03 16 3 C -0.14 -1.06 8.51 71.98 0.61 -0.45 16 4 C 0.05 0.70 6.99 72.45 0.51 1.20 16 5 O -0.40 -7.11 10.69 -148.98 -1.59 -8.70 16 6 C 0.08 1.20 3.14 31.46 0.10 1.29 16 7 H 0.08 1.02 7.79 -2.38 -0.02 1.01 16 8 C -0.10 -1.75 4.26 30.60 0.13 -1.62 16 9 C -0.13 -2.25 5.61 29.85 0.17 -2.09 16 10 C 0.51 12.80 7.83 87.65 0.69 13.49 16 11 O -0.59 -19.85 15.98 -3.01 -0.05 -19.90 16 12 N -0.72 -17.02 5.56 -463.06 -2.57 -19.59 16 13 C 0.13 3.61 5.67 86.38 0.49 4.10 16 14 C -0.13 -3.86 5.65 30.60 0.17 -3.68 16 15 C 0.15 5.49 5.71 86.38 0.49 5.99 16 16 N -0.58 -26.20 2.05 -678.03 -1.39 -27.59 16 17 C -0.27 -15.06 9.17 84.03 0.77 -14.29 16 18 H 0.03 1.61 8.06 -2.91 -0.02 1.58 16 19 C 0.01 0.66 3.75 84.86 0.32 0.98 16 20 N -0.95 -57.80 13.97 21.65 0.30 -57.50 16 21 Si 0.94 45.26 24.86 68.60 1.71 46.97 16 22 H -0.25 -11.08 5.81 99.48 0.58 -10.50 16 23 H -0.32 -15.62 7.11 99.48 0.71 -14.91 16 24 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 25 C 0.10 3.92 5.15 44.99 0.23 4.16 16 26 C -0.22 -9.02 6.68 30.59 0.20 -8.81 16 27 C -0.19 -6.92 10.36 30.60 0.32 -6.61 16 28 C -0.14 -1.66 5.57 32.25 0.18 -1.49 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.49 7.56 -2.39 -0.02 0.47 16 32 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 33 H 0.05 0.49 8.12 -2.39 -0.02 0.47 16 34 H 0.07 0.45 8.14 -2.38 -0.02 0.44 16 35 H 0.07 0.86 7.80 -2.39 -0.02 0.84 16 36 H 0.07 0.84 7.84 -2.39 -0.02 0.82 16 37 H 0.08 1.47 8.10 -2.39 -0.02 1.45 16 38 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 39 H 0.11 1.75 7.91 -2.39 -0.02 1.73 16 40 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.41 7.66 8.47 -92.71 -0.79 6.87 16 42 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 46 H 0.04 1.74 8.04 -2.39 -0.02 1.72 16 47 H 0.06 2.02 8.07 -2.38 -0.02 2.00 16 48 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 49 H 0.12 3.96 8.14 -2.39 -0.02 3.94 16 50 H 0.08 4.04 5.08 -2.39 -0.01 4.03 16 51 H 0.10 3.55 7.86 -2.39 -0.02 3.53 16 52 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 53 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 54 H 0.09 0.89 8.03 -2.39 -0.02 0.87 16 55 H 0.07 0.98 7.97 -2.39 -0.02 0.96 16 Total: -1.00 -70.57 427.38 2.26 -68.30 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: -0.08 Total: 27.36 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 5.94 Total: -9.34 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -3.66 Total: -104.68 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -1.64 Total: -28.60 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.71 Total: 46.97 kcal Total: -70.57 2.26 -68.30 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752284450.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.826 kcal (2) G-P(sol) polarization free energy of solvation -70.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds