Wall clock time and date at job start Tue Mar 31 2020 21:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 120.00055 * 2 1 4 4 H 1.08002 * 119.99540 * 160.03025 * 3 2 1 5 5 C 1.38804 * 119.99990 * 339.75230 * 3 2 1 6 6 N 1.31622 * 120.00242 * 347.67074 * 5 3 2 7 7 Si 1.86801 * 120.00140 * 167.66782 * 5 3 2 8 8 H 1.48498 * 109.46940 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.47222 * 119.99847 * 7 5 3 10 10 H 1.48501 * 109.47214 * 240.00241 * 7 5 3 11 11 C 1.46503 * 119.99897 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47027 * 269.99864 * 11 2 1 13 13 H 1.08996 * 110.88878 * 308.88192 * 12 11 2 14 14 C 1.55152 * 111.00287 * 72.80648 * 12 11 2 15 15 C 1.54320 * 102.94312 * 153.57468 * 14 12 11 16 16 N 1.47023 * 107.27031 * 337.80435 * 15 14 12 17 17 C 1.34781 * 125.64712 * 178.97140 * 16 15 14 18 18 O 1.21282 * 119.99976 * 179.97438 * 17 16 15 19 19 C 1.50699 * 120.00181 * 359.96628 * 17 16 15 20 20 C 1.53008 * 109.47112 * 179.97438 * 19 17 16 21 21 H 1.08994 * 109.47730 * 55.01957 * 20 19 17 22 22 C 1.53084 * 109.47596 * 175.05483 * 20 19 17 23 23 C 1.53182 * 109.16051 * 177.59199 * 22 20 19 24 24 C 1.53180 * 109.03605 * 303.02014 * 23 22 20 25 25 C 1.52997 * 109.52336 * 297.07504 * 24 23 22 26 26 C 1.53000 * 109.52250 * 176.88209 * 24 23 22 27 27 C 1.53094 * 109.16330 * 56.97715 * 24 23 22 28 28 O 1.42901 * 109.41667 * 302.39366 * 27 24 23 29 29 C 1.47420 * 108.70425 * 358.94216 * 16 15 14 30 30 H 1.08996 * 109.47219 * 84.84441 * 1 2 3 31 31 H 1.09000 * 109.47242 * 204.84499 * 1 2 3 32 32 H 1.09002 * 109.46850 * 324.84943 * 1 2 3 33 33 H 0.97001 * 120.00150 * 180.02562 * 6 5 3 34 34 H 1.08998 * 109.47075 * 29.99984 * 11 2 1 35 35 H 1.09003 * 109.46803 * 149.99618 * 11 2 1 36 36 H 1.08998 * 110.72028 * 271.93841 * 14 12 11 37 37 H 1.08994 * 110.72359 * 35.21092 * 14 12 11 38 38 H 1.09002 * 109.88703 * 218.39242 * 15 14 12 39 39 H 1.08998 * 110.01544 * 97.29470 * 15 14 12 40 40 H 1.09001 * 109.46616 * 299.99535 * 19 17 16 41 41 H 1.08996 * 109.47190 * 59.99731 * 19 17 16 42 42 H 1.09000 * 109.52614 * 297.49617 * 22 20 19 43 43 H 1.09000 * 109.52835 * 57.68786 * 22 20 19 44 44 H 1.08996 * 109.54631 * 183.15013 * 23 22 20 45 45 H 1.09001 * 109.54184 * 62.88679 * 23 22 20 46 46 H 1.08998 * 109.47549 * 179.68696 * 25 24 23 47 47 H 1.09006 * 109.46876 * 299.68186 * 25 24 23 48 48 H 1.08999 * 109.47273 * 59.68169 * 25 24 23 49 49 H 1.08988 * 109.47542 * 300.31832 * 26 24 23 50 50 H 1.09003 * 109.47031 * 60.31821 * 26 24 23 51 51 H 1.08998 * 109.47025 * 180.31190 * 26 24 23 52 52 H 1.09000 * 109.48092 * 182.40459 * 27 24 23 53 53 H 1.09005 * 109.47621 * 62.37919 * 27 24 23 54 54 H 1.09003 * 110.36260 * 265.29070 * 29 16 15 55 55 H 1.09004 * 110.36997 * 142.96888 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1810 1.2139 0.3194 5 6 1.5200 2.3509 -0.4160 6 7 0.3598 2.2871 -1.0343 7 14 2.3191 4.0092 -0.0983 8 1 3.6103 3.8093 0.6073 9 1 2.5636 4.6967 -1.3916 10 1 1.4189 4.8397 0.7414 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4417 13 1 2.9024 -0.9052 2.0215 14 6 1.1450 -2.2141 2.1085 15 6 1.6600 -3.1965 3.1815 16 7 3.0031 -3.6290 2.7686 17 6 3.8003 -4.4749 3.4509 18 8 4.8940 -4.7633 3.0133 19 6 3.3327 -5.0623 4.7575 20 6 4.4178 -5.9824 5.3205 21 1 5.3547 -5.4316 5.4026 22 6 3.9959 -6.4818 6.7047 23 6 5.0584 -7.4491 7.2356 24 6 5.2369 -8.5941 6.2338 25 6 3.9285 -9.3782 6.1151 26 6 6.3509 -9.5258 6.7154 27 6 5.6108 -8.0130 4.8677 28 8 4.5963 -7.0989 4.4466 29 6 3.3333 -2.9847 1.4844 30 1 -0.3633 0.0923 -1.0235 31 1 -0.3634 -0.9325 0.4318 32 1 -0.3633 0.8403 0.5917 33 1 -0.0801 3.1012 -1.3254 34 1 1.6084 -2.0282 -0.5147 35 1 3.1499 -1.1382 -0.5144 36 1 0.6047 -1.3875 2.5700 37 1 0.5160 -2.7302 1.3833 38 1 0.9960 -4.0586 3.2441 39 1 1.7123 -2.6980 4.1494 40 1 3.1335 -4.2586 5.4665 41 1 2.4204 -5.6355 4.5924 42 1 3.9020 -5.6350 7.3845 43 1 3.0387 -6.9978 6.6297 44 1 4.7376 -7.8518 8.1963 45 1 6.0040 -6.9208 7.3577 46 1 4.0546 -10.1893 5.3980 47 1 3.6630 -9.7916 7.0882 48 1 3.1355 -8.7123 5.7747 49 1 7.2814 -8.9650 6.8021 50 1 6.0838 -9.9391 7.6880 51 1 6.4809 -10.3371 5.9992 52 1 5.6972 -8.8204 4.1406 53 1 6.5635 -7.4889 4.9441 54 1 3.0853 -3.6454 0.6537 55 1 4.3895 -2.7167 1.4548 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753350045.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:21 Heat of formation + Delta-G solvation = -92.745169 kcal Electronic energy + Delta-G solvation = -30387.535506 eV Core-core repulsion = 26423.696088 eV Total energy + Delta-G solvation = -3963.839418 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.36592 -40.56852 -38.85227 -37.07622 -36.23254 -34.28230 -33.82873 -32.16151 -30.66367 -30.23185 -28.16900 -27.93990 -27.40199 -26.70774 -25.29216 -23.93416 -22.90872 -22.49403 -21.19418 -20.13533 -19.80084 -18.61980 -18.01648 -17.57210 -17.23621 -16.76194 -16.54774 -16.38535 -15.94949 -15.61636 -15.44145 -15.20268 -14.98900 -14.75543 -14.59628 -14.33067 -14.21880 -13.64012 -13.60190 -13.53375 -13.45478 -13.03263 -12.92792 -12.91076 -12.82010 -12.78082 -12.76078 -12.58278 -12.49121 -12.44153 -12.13670 -11.94617 -11.92549 -11.76644 -11.74296 -11.57882 -11.36750 -11.34666 -11.11325 -10.83510 -10.60571 -10.20929 -9.60292 -8.75806 -7.79945 -5.25938 1.45588 1.47470 1.57197 1.69389 2.02802 2.52071 2.86062 3.32604 3.42774 3.65297 3.69028 3.76797 3.79451 3.83936 3.94255 4.04457 4.11969 4.17042 4.27562 4.36761 4.40974 4.47735 4.54052 4.61201 4.63183 4.63624 4.68102 4.73493 4.80185 4.82563 4.86319 4.87335 4.89668 4.95934 4.97964 5.03254 5.05573 5.07068 5.13504 5.14457 5.23723 5.30093 5.31746 5.33175 5.40334 5.42418 5.53121 5.55020 5.65338 5.80017 6.34998 6.36690 6.60682 7.19198 7.21383 7.92448 8.33334 9.22867 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.029567 B = 0.001896 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.779208 B =14763.455897 C =14946.114046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.616 5.616 3 C -0.254 4.254 4 H 0.068 0.932 5 C -0.056 4.056 6 N -0.940 5.940 7 Si 0.965 3.035 8 H -0.270 1.270 9 H -0.295 1.295 10 H -0.290 1.290 11 C 0.161 3.839 12 C -0.106 4.106 13 H 0.061 0.939 14 C -0.114 4.114 15 C 0.104 3.896 16 N -0.621 5.621 17 C 0.520 3.480 18 O -0.582 6.582 19 C -0.122 4.122 20 C 0.104 3.896 21 H 0.042 0.958 22 C -0.145 4.145 23 C -0.111 4.111 24 C -0.100 4.100 25 C -0.133 4.133 26 C -0.138 4.138 27 C 0.070 3.930 28 O -0.389 6.389 29 C 0.117 3.883 30 H -0.004 1.004 31 H 0.039 0.961 32 H 0.016 0.984 33 H 0.247 0.753 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.134 0.866 41 H 0.118 0.882 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.059 0.941 46 H 0.051 0.949 47 H 0.064 0.936 48 H 0.054 0.946 49 H 0.054 0.946 50 H 0.068 0.932 51 H 0.058 0.942 52 H 0.089 0.911 53 H 0.038 0.962 54 H 0.068 0.932 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.373 -23.582 20.221 31.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.339 5.339 3 C -0.385 4.385 4 H 0.085 0.915 5 C -0.251 4.251 6 N -0.588 5.588 7 Si 0.794 3.206 8 H -0.194 1.194 9 H -0.222 1.222 10 H -0.217 1.217 11 C 0.035 3.965 12 C -0.128 4.128 13 H 0.080 0.920 14 C -0.151 4.151 15 C -0.017 4.017 16 N -0.355 5.355 17 C 0.311 3.689 18 O -0.462 6.462 19 C -0.161 4.161 20 C 0.046 3.954 21 H 0.060 0.940 22 C -0.182 4.182 23 C -0.148 4.148 24 C -0.100 4.100 25 C -0.190 4.190 26 C -0.195 4.195 27 C -0.007 4.007 28 O -0.308 6.308 29 C -0.007 4.007 30 H 0.014 0.986 31 H 0.058 0.942 32 H 0.035 0.965 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.152 0.848 41 H 0.136 0.864 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.083 0.917 48 H 0.073 0.927 49 H 0.073 0.927 50 H 0.087 0.913 51 H 0.077 0.923 52 H 0.107 0.893 53 H 0.056 0.944 54 H 0.086 0.914 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.779 -23.695 19.812 31.254 hybrid contribution 0.642 1.435 -0.385 1.619 sum 5.422 -22.260 19.427 30.039 Atomic orbital electron populations 1.20559 0.82332 0.96240 0.97283 1.44101 1.02285 1.01317 1.86174 1.19532 0.96635 0.86430 1.35880 0.91460 1.25686 0.98428 1.01480 0.99481 1.70257 1.18462 1.26858 1.43210 0.85232 0.78001 0.80449 0.76949 1.19408 1.22191 1.21718 1.20738 0.95476 0.87118 0.93187 1.22839 0.95870 0.94920 0.99201 0.92045 1.22582 0.96659 0.98264 0.97634 1.22235 0.82138 0.98640 0.98736 1.48712 1.18529 1.45431 1.22856 1.20943 0.83633 0.77491 0.86851 1.90683 1.23210 1.61361 1.70988 1.21797 1.00608 1.00170 0.93542 1.21837 0.96907 0.86792 0.89911 0.94025 1.22235 1.00276 1.00595 0.95131 1.21671 0.98939 0.95502 0.98687 1.21204 0.97323 0.96326 0.95155 1.21778 0.96060 0.99340 1.01855 1.21774 0.97175 0.98783 1.01769 1.22664 0.89923 0.92007 0.96075 1.87934 1.57609 1.35518 1.49733 1.22097 0.98996 0.93536 0.86072 0.98554 0.94247 0.96519 0.94407 0.92752 0.94388 0.90388 0.90305 0.88949 0.89683 0.84822 0.86370 0.89073 0.89851 0.89820 0.92210 0.93006 0.91651 0.92669 0.92703 0.91265 0.92262 0.89298 0.94409 0.91380 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.57 8.73 127.77 1.11 9.68 16 2 N -0.62 -29.89 2.90 -726.95 -2.11 -32.00 16 3 C -0.25 -13.84 9.69 84.03 0.81 -13.03 16 4 H 0.07 3.61 7.86 -2.91 -0.02 3.59 16 5 C -0.06 -3.15 5.12 84.86 0.43 -2.72 16 6 N -0.94 -55.50 10.51 21.65 0.23 -55.27 16 7 Si 0.96 45.34 29.57 68.60 2.03 47.37 16 8 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 9 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 10 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 11 C 0.16 6.27 5.15 86.38 0.44 6.71 16 12 C -0.11 -3.43 3.26 -9.40 -0.03 -3.46 16 13 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 14 C -0.11 -2.91 5.09 31.78 0.16 -2.75 16 15 C 0.10 2.07 6.49 86.73 0.56 2.63 16 16 N -0.62 -16.38 3.33 -811.78 -2.70 -19.08 16 17 C 0.52 14.47 7.73 87.66 0.68 15.15 16 18 O -0.58 -21.57 15.68 10.73 0.17 -21.41 16 19 C -0.12 -2.16 4.60 29.85 0.14 -2.02 16 20 C 0.10 2.01 2.19 30.63 0.07 2.08 16 21 H 0.04 0.98 7.95 -2.39 -0.02 0.96 16 22 C -0.14 -1.77 5.05 30.68 0.16 -1.62 16 23 C -0.11 -1.30 4.81 30.72 0.15 -1.16 16 24 C -0.10 -1.32 0.78 -52.09 -0.04 -1.36 16 25 C -0.13 -1.66 8.08 71.98 0.58 -1.07 16 26 C -0.14 -1.44 8.49 71.98 0.61 -0.83 16 27 C 0.07 1.34 5.54 72.01 0.40 1.74 16 28 O -0.39 -9.36 9.06 -135.22 -1.23 -10.59 16 29 C 0.12 3.53 6.38 86.86 0.55 4.08 16 30 H 0.00 -0.21 7.41 -2.39 -0.02 -0.22 16 31 H 0.04 1.51 6.54 -2.39 -0.02 1.50 16 32 H 0.02 0.85 7.13 -2.39 -0.02 0.83 16 33 H 0.25 14.16 8.31 -92.71 -0.77 13.38 16 34 H 0.05 1.94 7.90 -2.39 -0.02 1.92 16 35 H 0.04 1.54 8.04 -2.39 -0.02 1.52 16 36 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.08 1.94 7.54 -2.39 -0.02 1.92 16 38 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.13 1.57 8.14 -2.39 -0.02 1.56 16 41 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.08 0.93 6.62 -2.39 -0.02 0.91 16 44 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 48 H 0.05 0.79 6.13 -2.39 -0.01 0.78 16 49 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 51 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 52 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 53 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 54 H 0.07 2.01 8.04 -2.39 -0.02 1.99 16 55 H 0.05 1.85 8.04 -2.38 -0.02 1.83 16 Total: -1.00 -71.61 417.32 4.00 -67.61 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.82 Total: 11.31 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 6.79 Total: 12.05 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -4.58 Total: -106.35 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -1.06 Total: -32.00 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -71.61 4.00 -67.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753350045.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.135 kcal (2) G-P(sol) polarization free energy of solvation -71.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds