Wall clock time and date at job start Tue Mar 31 2020 21:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36937 * 119.99431 * 2 1 4 4 H 1.08006 * 119.99441 * 202.30658 * 3 2 1 5 5 C 1.38810 * 120.00491 * 22.29796 * 3 2 1 6 6 N 1.31618 * 119.99785 * 11.39490 * 5 3 2 7 7 Si 1.86802 * 120.00188 * 191.38439 * 5 3 2 8 8 H 1.48500 * 109.46901 * 60.00505 * 7 5 3 9 9 H 1.48506 * 109.46772 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47256 * 300.00581 * 7 5 3 11 11 C 1.46494 * 120.00228 * 179.97438 * 2 1 3 12 12 C 1.52993 * 109.47623 * 270.00198 * 11 2 1 13 13 H 1.09001 * 110.91839 * 57.44433 * 12 11 2 14 14 C 1.55161 * 111.00413 * 293.54902 * 12 11 2 15 15 C 1.54319 * 102.94316 * 206.42167 * 14 12 11 16 16 N 1.47021 * 107.27406 * 22.19068 * 15 14 12 17 17 C 1.34769 * 125.65362 * 181.02008 * 16 15 14 18 18 O 1.21277 * 120.00658 * 180.02562 * 17 16 15 19 19 C 1.50702 * 119.99746 * 0.03099 * 17 16 15 20 20 C 1.53005 * 109.47257 * 179.97438 * 19 17 16 21 21 H 1.08996 * 109.48039 * 54.99405 * 20 19 17 22 22 C 1.53089 * 109.48926 * 175.02628 * 20 19 17 23 23 C 1.53186 * 109.16034 * 177.59599 * 22 20 19 24 24 C 1.53185 * 109.03343 * 303.01800 * 23 22 20 25 25 C 1.52991 * 109.52168 * 297.07322 * 24 23 22 26 26 C 1.53000 * 109.51845 * 176.88544 * 24 23 22 27 27 C 1.53089 * 109.16151 * 56.98205 * 24 23 22 28 28 O 1.42898 * 109.41779 * 302.38997 * 27 24 23 29 29 C 1.47432 * 108.69969 * 1.28743 * 16 15 14 30 30 H 1.09001 * 109.47441 * 274.22425 * 1 2 3 31 31 H 1.08994 * 109.47370 * 34.23009 * 1 2 3 32 32 H 1.09004 * 109.46868 * 154.22866 * 1 2 3 33 33 H 0.97001 * 120.00078 * 180.02562 * 6 5 3 34 34 H 1.09003 * 109.46785 * 149.99795 * 11 2 1 35 35 H 1.09002 * 109.46876 * 30.00452 * 11 2 1 36 36 H 1.09002 * 110.72107 * 88.05834 * 14 12 11 37 37 H 1.09009 * 110.86981 * 324.85683 * 14 12 11 38 38 H 1.09000 * 109.88449 * 262.77483 * 15 14 12 39 39 H 1.09005 * 110.01141 * 141.68143 * 15 14 12 40 40 H 1.08992 * 109.47597 * 59.99597 * 19 17 16 41 41 H 1.09000 * 109.46749 * 299.99244 * 19 17 16 42 42 H 1.08997 * 109.52562 * 297.49730 * 22 20 19 43 43 H 1.08995 * 109.52259 * 57.69107 * 22 20 19 44 44 H 1.08994 * 109.53930 * 183.15115 * 23 22 20 45 45 H 1.08997 * 109.54515 * 62.88287 * 23 22 20 46 46 H 1.09000 * 109.46830 * 179.68782 * 25 24 23 47 47 H 1.09000 * 109.47718 * 299.68481 * 25 24 23 48 48 H 1.09008 * 109.47351 * 59.69161 * 25 24 23 49 49 H 1.08996 * 109.47340 * 300.31971 * 26 24 23 50 50 H 1.09005 * 109.46929 * 60.31634 * 26 24 23 51 51 H 1.08996 * 109.47253 * 180.31298 * 26 24 23 52 52 H 1.09002 * 109.47776 * 182.40101 * 27 24 23 53 53 H 1.09008 * 109.48270 * 62.37476 * 27 24 23 54 54 H 1.09001 * 110.36592 * 94.48285 * 29 16 15 55 55 H 1.09000 * 110.36656 * 216.80312 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1690 1.2210 -0.3550 5 6 1.5334 2.3432 0.4561 6 7 0.3838 2.2694 1.0927 7 14 2.3359 4.0050 0.1666 8 1 2.4907 4.2324 -1.2926 9 1 1.4837 5.0739 0.7470 10 1 3.6712 4.0298 0.8159 11 6 2.1976 -1.2686 0.0006 12 6 2.4526 -1.7098 1.4432 13 1 1.5160 -1.8037 1.9927 14 6 3.4224 -0.7336 2.1600 15 6 4.0765 -1.6247 3.2368 16 7 3.9385 -3.0193 2.7922 17 6 4.3656 -4.1049 3.4669 18 8 4.1982 -5.2125 3.0023 19 6 5.0513 -3.9424 4.7991 20 6 5.4318 -5.3190 5.3481 21 1 6.0341 -5.8504 4.6112 22 6 6.2370 -5.1492 6.6390 23 6 6.5623 -6.5313 7.2141 24 6 5.2558 -7.2984 7.4403 25 6 4.4049 -6.5640 8.4782 26 6 5.5715 -8.7091 7.9416 27 6 4.4886 -7.3850 6.1183 28 8 4.2456 -6.0669 5.6228 29 6 3.2611 -3.0330 1.4827 30 1 -0.3634 0.0757 1.0249 31 1 -0.3634 0.8496 -0.5780 32 1 -0.3633 -0.9255 -0.4468 33 1 -0.0471 3.0781 1.4111 34 1 3.1500 -1.1384 -0.5134 35 1 1.6085 -2.0285 -0.5130 36 1 2.8727 0.0873 2.6206 37 1 4.1725 -0.3526 1.4669 38 1 3.5673 -1.4878 4.1908 39 1 5.1316 -1.3713 3.3402 40 1 4.3765 -3.4471 5.4971 41 1 5.9508 -3.3397 4.6735 42 1 7.1635 -4.6173 6.4232 43 1 5.6505 -4.5827 7.3622 44 1 7.0871 -6.4172 8.1625 45 1 7.1902 -7.0798 6.5120 46 1 3.4731 -7.1076 8.6344 47 1 4.9518 -6.5028 9.4190 48 1 4.1832 -5.5584 8.1206 49 1 6.1801 -9.2297 7.2023 50 1 6.1178 -8.6464 8.8828 51 1 4.6416 -9.2560 8.0970 52 1 3.5381 -7.8928 6.2823 53 1 5.0785 -7.9436 5.3915 54 1 3.9944 -3.0565 0.6766 55 1 2.5904 -3.8893 1.4116 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753350046.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:26 Heat of formation + Delta-G solvation = -91.651577 kcal Electronic energy + Delta-G solvation = -30627.549629 eV Core-core repulsion = 26663.757633 eV Total energy + Delta-G solvation = -3963.791996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.36054 -40.55746 -38.81770 -37.04877 -36.23461 -34.26325 -33.74746 -32.22083 -30.65394 -30.15358 -28.17933 -27.93503 -27.37104 -26.69702 -25.25915 -23.83571 -23.10968 -22.47721 -21.02346 -20.06797 -19.79977 -18.74572 -17.98421 -17.59497 -17.20626 -16.70647 -16.51424 -16.21742 -15.92744 -15.74456 -15.24392 -15.18221 -15.08220 -14.79490 -14.65311 -14.39653 -14.12990 -13.69638 -13.58558 -13.47835 -13.36186 -13.03385 -12.92547 -12.85482 -12.82652 -12.77353 -12.76156 -12.58557 -12.46304 -12.33083 -12.09996 -12.05640 -11.93984 -11.76809 -11.67215 -11.55927 -11.35500 -11.30717 -11.11340 -10.82883 -10.54174 -10.20865 -9.60162 -8.72862 -7.74438 -5.21458 1.50635 1.53082 1.58565 1.68621 2.04179 2.56616 2.86599 3.37972 3.43584 3.65653 3.69465 3.79489 3.83740 3.83867 3.99397 4.04856 4.11540 4.19734 4.27751 4.36283 4.40769 4.47554 4.52742 4.61447 4.63059 4.67809 4.68086 4.73304 4.79397 4.81748 4.85580 4.88243 4.89871 4.95401 4.97237 5.02804 5.06719 5.08883 5.13978 5.17069 5.23709 5.31283 5.31709 5.38856 5.40446 5.47686 5.53825 5.54308 5.70639 5.77299 6.37601 6.39823 6.60497 7.20552 7.22452 7.94031 8.39394 9.29242 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023705 B = 0.002085 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.909121 B =13427.636481 C =13817.130746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.614 5.614 3 C -0.241 4.241 4 H 0.073 0.927 5 C -0.054 4.054 6 N -0.940 5.940 7 Si 0.960 3.040 8 H -0.284 1.284 9 H -0.301 1.301 10 H -0.272 1.272 11 C 0.160 3.840 12 C -0.107 4.107 13 H 0.052 0.948 14 C -0.099 4.099 15 C 0.105 3.895 16 N -0.621 5.621 17 C 0.522 3.478 18 O -0.580 6.580 19 C -0.124 4.124 20 C 0.105 3.895 21 H 0.047 0.953 22 C -0.146 4.146 23 C -0.109 4.109 24 C -0.100 4.100 25 C -0.134 4.134 26 C -0.137 4.137 27 C 0.070 3.930 28 O -0.391 6.391 29 C 0.118 3.882 30 H 0.001 0.999 31 H 0.018 0.982 32 H 0.024 0.976 33 H 0.244 0.756 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.136 0.864 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.050 0.950 47 H 0.065 0.935 48 H 0.051 0.949 49 H 0.056 0.944 50 H 0.068 0.932 51 H 0.058 0.942 52 H 0.087 0.913 53 H 0.041 0.959 54 H 0.074 0.926 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.430 -17.100 14.627 26.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.336 5.336 3 C -0.372 4.372 4 H 0.091 0.909 5 C -0.248 4.248 6 N -0.587 5.587 7 Si 0.790 3.210 8 H -0.210 1.210 9 H -0.228 1.228 10 H -0.198 1.198 11 C 0.034 3.966 12 C -0.129 4.129 13 H 0.070 0.930 14 C -0.137 4.137 15 C -0.017 4.017 16 N -0.354 5.354 17 C 0.312 3.688 18 O -0.460 6.460 19 C -0.164 4.164 20 C 0.047 3.953 21 H 0.065 0.935 22 C -0.183 4.183 23 C -0.147 4.147 24 C -0.100 4.100 25 C -0.192 4.192 26 C -0.194 4.194 27 C -0.007 4.007 28 O -0.311 6.311 29 C -0.006 4.006 30 H 0.020 0.980 31 H 0.036 0.964 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.128 0.872 41 H 0.154 0.846 42 H 0.111 0.889 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.084 0.916 48 H 0.070 0.930 49 H 0.075 0.925 50 H 0.087 0.913 51 H 0.077 0.923 52 H 0.105 0.895 53 H 0.060 0.940 54 H 0.092 0.908 55 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.086 -17.538 14.445 26.733 hybrid contribution -0.191 1.032 -0.250 1.079 sum 13.895 -16.506 14.195 25.826 Atomic orbital electron populations 1.20527 0.83108 0.95704 0.97401 1.44146 1.01893 1.01744 1.85862 1.19372 0.97842 0.86018 1.33943 0.90931 1.25684 0.98453 1.01401 0.99274 1.70228 1.19269 1.27111 1.42133 0.85440 0.77847 0.80179 0.77571 1.21010 1.22760 1.19754 1.20881 0.96114 0.86813 0.92802 1.22898 0.96990 0.93171 0.99819 0.92962 1.22294 0.97786 0.96695 0.96947 1.22207 1.01972 0.79343 0.98173 1.48723 1.58442 1.07114 1.21161 1.20870 0.78392 0.82485 0.87011 1.90668 1.58659 1.25946 1.70693 1.21807 1.03340 0.98589 0.92628 1.21838 0.86654 0.90834 0.95980 0.93457 1.22241 1.01013 0.98611 0.96461 1.21666 0.96110 0.95004 1.01897 1.21204 0.96177 0.97141 0.95487 1.21786 0.99181 1.00218 0.97969 1.21769 1.01871 0.94248 1.01537 1.22670 1.00450 0.83765 0.93794 1.87947 1.30989 1.27021 1.85101 1.22205 0.95397 0.97654 0.85318 0.98030 0.96356 0.95767 0.94635 0.92582 0.92887 0.92308 0.91018 0.90880 0.88843 0.87248 0.84580 0.88901 0.90307 0.89853 0.91847 0.93081 0.91624 0.92954 0.92467 0.91277 0.92337 0.89462 0.94042 0.90814 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.72 9.01 127.77 1.15 9.88 16 2 N -0.61 -29.35 2.87 -726.95 -2.09 -31.44 16 3 C -0.24 -12.39 8.73 84.03 0.73 -11.66 16 4 H 0.07 3.58 7.85 -2.91 -0.02 3.56 16 5 C -0.05 -2.88 5.13 84.86 0.44 -2.45 16 6 N -0.94 -54.13 10.58 21.65 0.23 -53.90 16 7 Si 0.96 43.56 29.57 68.60 2.03 45.59 16 8 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 9 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 C 0.16 6.12 5.25 86.38 0.45 6.57 16 12 C -0.11 -3.75 3.31 -9.33 -0.03 -3.78 16 13 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 14 C -0.10 -3.30 5.39 31.78 0.17 -3.12 16 15 C 0.11 2.66 6.48 86.73 0.56 3.23 16 16 N -0.62 -17.98 3.32 -811.36 -2.70 -20.68 16 17 C 0.52 15.42 7.73 87.66 0.68 16.10 16 18 O -0.58 -21.79 15.68 10.73 0.17 -21.63 16 19 C -0.12 -2.49 4.60 29.85 0.14 -2.36 16 20 C 0.11 2.17 2.19 30.63 0.07 2.24 16 21 H 0.05 1.12 7.95 -2.39 -0.02 1.10 16 22 C -0.15 -1.99 5.06 30.69 0.16 -1.83 16 23 C -0.11 -1.38 4.81 30.72 0.15 -1.23 16 24 C -0.10 -1.44 0.78 -52.09 -0.04 -1.48 16 25 C -0.13 -1.93 8.08 71.98 0.58 -1.35 16 26 C -0.14 -1.53 8.49 71.98 0.61 -0.92 16 27 C 0.07 1.42 5.54 72.01 0.40 1.82 16 28 O -0.39 -10.12 9.07 -135.23 -1.23 -11.34 16 29 C 0.12 3.68 6.38 86.93 0.55 4.23 16 30 H 0.00 0.08 7.42 -2.39 -0.02 0.06 16 31 H 0.02 0.96 7.19 -2.39 -0.02 0.94 16 32 H 0.02 1.02 7.84 -2.38 -0.02 1.00 16 33 H 0.24 13.89 8.31 -92.71 -0.77 13.12 16 34 H 0.06 2.03 8.00 -2.39 -0.02 2.01 16 35 H 0.05 1.87 7.86 -2.39 -0.02 1.85 16 36 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.07 2.39 8.02 -2.38 -0.02 2.37 16 38 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.09 1.82 8.14 -2.38 -0.02 1.81 16 40 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.08 1.06 6.62 -2.39 -0.02 1.04 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.05 0.88 6.13 -2.38 -0.01 0.87 16 49 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 51 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 53 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 54 H 0.07 2.16 8.04 -2.39 -0.02 2.14 16 55 H 0.06 1.99 8.03 -2.39 -0.02 1.97 16 Total: -1.00 -67.70 418.90 4.00 -63.70 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.82 Total: 15.82 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 6.77 Total: 13.88 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -4.56 Total: -106.02 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -1.06 Total: -32.97 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -67.70 4.00 -63.70 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753350046.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.952 kcal (2) G-P(sol) polarization free energy of solvation -67.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds