Wall clock time and date at job start Tue Mar 31 2020 21:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47336 * 2 1 4 4 N 1.46492 * 109.47039 * 180.02562 * 3 2 1 5 5 C 1.36941 * 119.99747 * 180.02562 * 4 3 2 6 6 H 1.08001 * 119.99852 * 359.97438 * 5 4 3 7 7 C 1.38814 * 120.00091 * 179.97438 * 5 4 3 8 8 N 1.31615 * 120.00052 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99800 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47284 * 60.00039 * 9 7 5 11 11 H 1.48504 * 109.46702 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47294 * 299.99214 * 9 7 5 13 13 N 1.46496 * 109.47668 * 120.00238 * 2 1 3 14 14 C 1.34780 * 119.99982 * 304.29470 * 13 2 1 15 15 O 1.21283 * 119.99776 * 354.98601 * 14 13 2 16 16 C 1.50701 * 120.00219 * 174.98844 * 14 13 2 17 17 C 1.52998 * 109.46937 * 179.97438 * 16 14 13 18 18 H 1.08997 * 109.48323 * 304.97751 * 17 16 14 19 19 C 1.53092 * 109.48565 * 184.94530 * 17 16 14 20 20 C 1.53183 * 109.16225 * 182.40498 * 19 17 16 21 21 C 1.53181 * 109.03448 * 56.98110 * 20 19 17 22 22 C 1.52992 * 109.52141 * 62.92777 * 21 20 19 23 23 C 1.53000 * 109.51824 * 183.05172 * 21 20 19 24 24 C 1.53089 * 109.16539 * 303.01964 * 21 20 19 25 25 O 1.42905 * 109.47805 * 65.00410 * 17 16 14 26 26 C 1.53005 * 109.46837 * 240.00165 * 2 1 3 27 27 C 1.52994 * 117.49787 * 12.74173 * 26 2 1 28 28 C 1.52999 * 117.49918 * 304.07961 * 26 2 1 29 29 H 1.09007 * 109.46563 * 299.99992 * 1 2 3 30 30 H 1.09000 * 109.47565 * 59.99478 * 1 2 3 31 31 H 1.09000 * 109.47459 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46896 * 300.00374 * 3 2 1 33 33 H 1.09000 * 109.46925 * 59.99893 * 3 2 1 34 34 H 0.97000 * 120.00338 * 359.97438 * 4 3 2 35 35 H 0.96994 * 120.00334 * 179.97438 * 8 7 5 36 36 H 0.97002 * 120.00022 * 124.29250 * 13 2 1 37 37 H 1.08992 * 109.47153 * 59.99634 * 16 14 13 38 38 H 1.09004 * 109.46639 * 300.00094 * 16 14 13 39 39 H 1.08997 * 109.52545 * 62.50249 * 19 17 16 40 40 H 1.08999 * 109.52676 * 302.30614 * 19 17 16 41 41 H 1.09006 * 109.54190 * 297.11472 * 20 19 17 42 42 H 1.09002 * 109.54367 * 176.85051 * 20 19 17 43 43 H 1.09005 * 109.47530 * 59.99607 * 22 21 20 44 44 H 1.09006 * 109.47331 * 179.97438 * 22 21 20 45 45 H 1.09001 * 109.47511 * 299.99932 * 22 21 20 46 46 H 1.09000 * 109.47220 * 60.00348 * 23 21 20 47 47 H 1.08998 * 109.46866 * 180.02562 * 23 21 20 48 48 H 1.09004 * 109.47543 * 299.99862 * 23 21 20 49 49 H 1.09000 * 109.48205 * 177.59531 * 24 21 20 50 50 H 1.09004 * 109.48432 * 297.63057 * 24 21 20 51 51 H 1.09000 * 115.55009 * 158.40504 * 26 2 1 52 52 H 1.09001 * 117.50474 * 359.97438 * 27 26 2 53 53 H 1.08996 * 117.50204 * 145.02332 * 27 26 2 54 54 H 1.09001 * 117.49574 * 214.97925 * 28 26 2 55 55 H 1.09002 * 117.49522 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1897 2.6284 -0.0002 6 1 3.6496 3.5637 0.0002 7 6 5.5778 2.6284 -0.0002 8 7 6.2359 1.4886 -0.0002 9 14 6.5117 4.2462 -0.0004 10 1 6.1530 5.0250 1.2120 11 1 7.9718 3.9748 0.0002 12 1 6.1531 5.0247 -1.2130 13 7 2.0184 -0.6906 1.1961 14 6 1.6231 -0.2829 2.4184 15 8 0.9366 0.7104 2.5336 16 6 2.0339 -1.0610 3.6418 17 6 1.4578 -0.3900 4.8902 18 1 1.7664 0.6551 4.9164 19 6 1.9753 -1.1067 6.1401 20 6 1.3473 -0.4676 7.3825 21 6 -0.1783 -0.5363 7.2627 22 6 -0.6232 -1.9998 7.2312 23 6 -0.8175 0.1668 8.4618 24 6 -0.6126 0.1583 5.9694 25 8 0.0312 -0.4650 4.8561 26 6 2.0399 -0.7212 -1.2493 27 6 1.0273 -1.0156 -2.3578 28 6 1.5584 -2.1545 -1.4837 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.9900 0.6024 -0.0006 35 1 7.2058 1.4886 -0.0006 36 1 2.6263 -1.4414 1.1083 37 1 3.1215 -1.0825 3.7104 38 1 1.6543 -2.0802 3.5685 39 1 3.0600 -1.0127 6.1911 40 1 1.7018 -2.1608 6.0951 41 1 1.6608 0.5739 7.4548 42 1 1.6679 -1.0089 8.2726 43 1 -0.3087 -2.4951 8.1499 44 1 -1.7089 -2.0478 7.1464 45 1 -0.1691 -2.4994 6.3755 46 1 -0.5018 1.2099 8.4821 47 1 -1.9029 0.1170 8.3759 48 1 -0.5032 -0.3260 9.3819 49 1 -1.6937 0.0752 5.8575 50 1 -0.3311 1.2106 6.0097 51 1 3.0587 -0.4770 -1.5502 52 1 -0.0022 -0.6958 -2.1970 53 1 1.3800 -0.9656 -3.3879 54 1 2.2603 -2.8531 -1.9390 55 1 0.8786 -2.5836 -0.7475 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753519713.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:48 Heat of formation + Delta-G solvation = -80.301818 kcal Electronic energy + Delta-G solvation = -31615.232091 eV Core-core repulsion = 27651.932258 eV Total energy + Delta-G solvation = -3963.299834 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.46912 -40.71240 -38.89972 -36.40987 -36.18304 -34.88385 -34.16944 -33.01890 -31.48728 -30.07286 -28.15239 -27.58856 -26.93175 -25.61000 -24.76243 -24.03300 -23.12563 -22.62317 -21.02970 -20.07298 -19.79701 -19.22480 -18.17188 -17.42573 -17.07258 -16.77362 -16.51639 -16.20299 -15.95121 -15.75378 -15.62118 -15.33388 -15.10980 -14.94296 -14.57805 -14.21249 -14.05837 -13.74757 -13.61132 -13.52333 -13.26922 -13.09212 -13.03021 -12.87564 -12.80883 -12.78151 -12.74145 -12.44256 -12.38036 -12.22397 -12.02971 -11.99975 -11.92424 -11.76219 -11.72876 -11.34396 -11.22038 -11.10253 -11.05098 -10.90017 -10.38564 -10.17132 -9.81721 -8.93876 -7.95137 -5.21058 1.43581 1.46334 1.52500 1.90982 2.27227 2.55094 2.87928 3.06616 3.37056 3.65214 3.68457 3.78589 3.80586 3.84994 3.94198 3.98196 4.07221 4.18122 4.20990 4.25354 4.29326 4.42323 4.48789 4.57169 4.61443 4.65732 4.70424 4.76743 4.80226 4.81781 4.84614 4.88906 4.90166 4.93262 4.97533 5.01599 5.03761 5.04248 5.05581 5.14978 5.15547 5.23701 5.31439 5.32483 5.34195 5.40437 5.44990 5.49235 5.55563 5.80649 6.27545 6.37990 6.81931 7.34763 7.53345 8.09856 8.39464 9.27572 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009976 B = 0.003401 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.012297 B = 8229.857209 C =10116.077802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.213 3.787 3 C 0.148 3.852 4 N -0.727 5.727 5 C -0.247 4.247 6 H 0.060 0.940 7 C -0.067 4.067 8 N -0.962 5.962 9 Si 0.968 3.032 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.280 1.280 13 N -0.708 5.708 14 C 0.512 3.488 15 O -0.565 6.565 16 C -0.129 4.129 17 C 0.110 3.890 18 H 0.030 0.970 19 C -0.145 4.145 20 C -0.111 4.111 21 C -0.098 4.098 22 C -0.132 4.132 23 C -0.137 4.137 24 C 0.069 3.931 25 O -0.381 6.381 26 C -0.174 4.174 27 C -0.166 4.166 28 C -0.153 4.153 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.013 0.987 33 H 0.015 0.985 34 H 0.378 0.622 35 H 0.252 0.748 36 H 0.406 0.594 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.053 0.947 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.062 0.938 48 H 0.069 0.931 49 H 0.094 0.906 50 H 0.031 0.969 51 H 0.086 0.914 52 H 0.110 0.890 53 H 0.098 0.902 54 H 0.105 0.895 55 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.912 -13.263 11.834 22.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.127 3.873 3 C 0.020 3.980 4 N -0.370 5.370 5 C -0.379 4.379 6 H 0.078 0.922 7 C -0.260 4.260 8 N -0.613 5.613 9 Si 0.797 3.203 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.206 1.206 13 N -0.360 5.360 14 C 0.299 3.701 15 O -0.444 6.444 16 C -0.169 4.169 17 C 0.051 3.949 18 H 0.048 0.952 19 C -0.182 4.182 20 C -0.149 4.149 21 C -0.099 4.099 22 C -0.189 4.189 23 C -0.194 4.194 24 C -0.008 4.008 25 O -0.300 6.300 26 C -0.193 4.193 27 C -0.203 4.203 28 C -0.189 4.189 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.030 0.970 33 H 0.033 0.967 34 H 0.211 0.789 35 H 0.061 0.939 36 H 0.242 0.758 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.112 0.888 50 H 0.050 0.950 51 H 0.104 0.896 52 H 0.128 0.872 53 H 0.117 0.883 54 H 0.123 0.877 55 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.502 -12.470 11.761 22.453 hybrid contribution 1.496 1.051 -0.071 1.830 sum -13.006 -11.419 11.689 20.885 Atomic orbital electron populations 1.22154 0.93297 1.02756 1.02736 1.19743 0.93874 0.90126 0.83581 1.21061 0.84332 0.95568 0.97000 1.42262 1.00659 1.05022 1.89076 1.19506 0.89750 0.87156 1.41474 0.92165 1.25397 0.96937 0.99912 1.03706 1.69765 1.06600 1.25494 1.59392 0.85306 0.77459 0.79655 0.77901 1.21131 1.21459 1.20610 1.45922 1.49535 1.35601 1.04918 1.20954 0.79190 0.84684 0.85224 1.90621 1.39940 1.27100 1.86738 1.21775 1.03233 1.01342 0.90531 1.21692 0.81532 0.97574 0.94059 0.95179 1.22227 1.01202 1.01185 0.93629 1.21682 0.94158 1.00822 0.98227 1.21188 0.95882 0.97376 0.95408 1.21769 1.01084 0.93984 1.02048 1.21774 1.00823 0.99962 0.96888 1.22673 0.97588 0.94862 0.85641 1.87915 1.18511 1.78399 1.45148 1.22250 0.99646 1.00236 0.97191 1.23178 0.99032 1.02584 0.95551 1.23014 1.03309 0.89919 1.02702 0.92555 0.90893 0.90697 0.96965 0.96722 0.78878 0.93944 0.75850 0.86518 0.85836 0.90057 0.89406 0.92828 0.89700 0.91623 0.92597 0.92663 0.93054 0.91882 0.91190 0.88754 0.95017 0.89582 0.87207 0.88321 0.87699 0.87532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.60 6.98 71.98 0.50 -4.10 16 2 C 0.21 7.32 0.54 3.61 0.00 7.32 16 3 C 0.15 6.79 5.03 86.38 0.43 7.22 16 4 N -0.73 -38.63 5.04 -343.45 -1.73 -40.36 16 5 C -0.25 -14.63 9.99 84.03 0.84 -13.79 16 6 H 0.06 3.57 7.83 -2.91 -0.02 3.55 16 7 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 8 N -0.96 -58.63 13.06 21.65 0.28 -58.34 16 9 Si 0.97 47.71 29.55 68.60 2.03 49.73 16 10 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 11 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 N -0.71 -22.68 4.73 -422.91 -2.00 -24.68 16 14 C 0.51 17.65 7.12 87.66 0.62 18.28 16 15 O -0.57 -24.10 11.66 10.75 0.13 -23.97 16 16 C -0.13 -3.31 5.41 29.85 0.16 -3.15 16 17 C 0.11 2.94 2.19 30.62 0.07 3.01 16 18 H 0.03 1.01 7.96 -2.39 -0.02 0.99 16 19 C -0.14 -2.79 5.05 30.69 0.16 -2.64 16 20 C -0.11 -1.98 4.81 30.72 0.15 -1.83 16 21 C -0.10 -1.72 0.77 -52.09 -0.04 -1.76 16 22 C -0.13 -2.03 8.07 71.98 0.58 -1.45 16 23 C -0.14 -1.95 8.49 71.98 0.61 -1.34 16 24 C 0.07 1.63 5.54 72.01 0.40 2.03 16 25 O -0.38 -10.91 9.06 -135.19 -1.22 -12.13 16 26 C -0.17 -5.35 4.84 -10.79 -0.05 -5.40 16 27 C -0.17 -4.00 9.64 30.62 0.30 -3.70 16 28 C -0.15 -3.36 9.82 30.62 0.30 -3.06 16 29 H 0.06 2.03 6.04 -2.38 -0.01 2.02 16 30 H 0.07 2.04 6.78 -2.39 -0.02 2.02 16 31 H 0.07 1.90 6.99 -2.39 -0.02 1.89 16 32 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.01 0.77 6.32 -2.39 -0.02 0.75 16 34 H 0.38 20.41 6.62 -92.71 -0.61 19.80 16 35 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 36 H 0.41 11.16 8.48 -92.71 -0.79 10.38 16 37 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.12 2.44 8.14 -2.38 -0.02 2.42 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 1.46 6.62 -2.39 -0.02 1.45 16 41 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 45 H 0.05 0.96 6.14 -2.39 -0.01 0.95 16 46 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 50 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.09 3.29 7.08 -2.39 -0.02 3.27 16 52 H 0.11 2.41 5.88 -2.39 -0.01 2.39 16 53 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 54 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 55 H 0.11 2.07 7.35 -2.39 -0.02 2.05 16 Total: -1.00 -73.12 414.75 2.45 -70.67 By element: Atomic # 1 Polarization: 47.45 SS G_CDS: -0.52 Total: 46.92 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 5.49 Total: -7.84 kcal Atomic # 7 Polarization: -119.94 SS G_CDS: -3.45 Total: -123.38 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -1.10 Total: -36.10 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.73 kcal Total: -73.12 2.45 -70.67 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753519713.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.633 kcal (2) G-P(sol) polarization free energy of solvation -73.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds