Wall clock time and date at job start Tue Mar 31 2020 22:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 110.74770 * 2 1 4 4 C 1.54379 * 110.84915 * 123.47237 * 2 1 3 5 5 O 1.43239 * 107.58925 * 139.54823 * 4 2 1 6 6 C 1.43648 * 109.96943 * 1.71496 * 5 4 2 7 7 H 1.08993 * 110.31154 * 94.58382 * 6 5 4 8 8 C 1.52997 * 110.30722 * 216.65735 * 6 5 4 9 9 C 1.50701 * 109.46972 * 293.54329 * 8 6 5 10 10 O 1.21277 * 120.00241 * 0.02562 * 9 8 6 11 11 N 1.34778 * 119.99885 * 179.97438 * 9 8 6 12 12 C 1.46930 * 120.63029 * 180.02562 * 11 9 8 13 13 C 1.53196 * 108.77649 * 233.58720 * 12 11 9 14 14 C 1.53037 * 109.31085 * 305.36692 * 13 12 11 15 15 C 1.52997 * 109.45871 * 181.38525 * 14 13 12 16 16 C 1.53006 * 109.47127 * 174.97157 * 15 14 13 17 17 N 1.46504 * 109.46883 * 180.02562 * 16 15 14 18 18 C 1.36936 * 119.99477 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00404 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99891 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00063 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99928 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47123 * 90.00034 * 22 20 18 24 24 H 1.48497 * 109.47329 * 210.00200 * 22 20 18 25 25 H 1.48506 * 109.46940 * 329.99912 * 22 20 18 26 26 C 1.53042 * 109.53048 * 61.36763 * 14 13 12 27 27 C 1.46923 * 120.63373 * 359.97438 * 11 9 8 28 28 C 1.54952 * 105.13480 * 335.56914 * 6 5 4 29 29 H 1.08999 * 109.47334 * 297.97614 * 1 2 3 30 30 H 1.08996 * 109.47567 * 57.98122 * 1 2 3 31 31 H 1.09008 * 109.46996 * 177.97977 * 1 2 3 32 32 H 1.09002 * 109.47016 * 182.01497 * 3 2 1 33 33 H 1.08997 * 109.47140 * 302.01641 * 3 2 1 34 34 H 1.09002 * 109.47120 * 62.02042 * 3 2 1 35 35 H 1.09004 * 109.83294 * 20.03231 * 4 2 1 36 36 H 1.09008 * 109.83074 * 259.06432 * 4 2 1 37 37 H 1.08997 * 109.47630 * 173.54329 * 8 6 5 38 38 H 1.09005 * 109.47258 * 53.54138 * 8 6 5 39 39 H 1.08994 * 109.58948 * 113.80015 * 12 11 9 40 40 H 1.09008 * 109.58300 * 353.37011 * 12 11 9 41 41 H 1.08997 * 109.50007 * 185.41233 * 13 12 11 42 42 H 1.09005 * 109.49670 * 65.31341 * 13 12 11 43 43 H 1.09005 * 109.45579 * 301.35490 * 14 13 12 44 44 H 1.09001 * 109.47502 * 54.97314 * 15 14 13 45 45 H 1.09001 * 109.47289 * 294.97110 * 15 14 13 46 46 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 47 47 H 1.08993 * 109.46955 * 60.00011 * 16 15 14 48 48 H 0.96992 * 119.99966 * 359.97438 * 17 16 15 49 49 H 0.97001 * 119.99776 * 180.02562 * 21 20 18 50 50 H 1.08998 * 109.49495 * 58.58171 * 26 14 13 51 51 H 1.09000 * 109.49560 * 178.67237 * 26 14 13 52 52 H 1.09005 * 109.58282 * 246.19826 * 27 11 9 53 53 H 1.08999 * 109.58522 * 6.47938 * 27 11 9 54 54 H 1.08992 * 111.12344 * 154.36868 * 28 6 5 55 55 H 1.08997 * 111.12079 * 278.52929 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0720 1.4308 0.0000 4 6 2.0794 -0.7957 1.2034 5 8 3.2045 -1.5538 0.7438 6 6 3.4464 -1.2794 -0.6453 7 1 4.1947 -0.4940 -0.7511 8 6 3.9050 -2.5491 -1.3653 9 6 5.2560 -2.9634 -0.8417 10 8 5.7984 -2.3080 0.0226 11 7 5.8610 -4.0629 -1.3332 12 6 7.1779 -4.4798 -0.8323 13 6 8.1297 -4.6404 -2.0220 14 6 7.5107 -5.6020 -3.0390 15 6 8.4739 -5.7918 -4.2126 16 6 7.9125 -6.8473 -5.1675 17 7 8.8351 -7.0295 -6.2909 18 6 8.5404 -7.9299 -7.2796 19 1 7.6282 -8.5060 -7.2311 20 6 9.4143 -8.1021 -8.3444 21 7 9.1313 -8.9679 -9.2945 22 14 10.9917 -7.1051 -8.4287 23 1 12.0806 -7.8421 -7.7385 24 1 11.3645 -6.8876 -9.8496 25 1 10.7840 -5.7930 -7.7651 26 6 6.1898 -5.0237 -3.5518 27 6 5.2158 -4.8681 -2.3792 28 6 2.0827 -0.8051 -1.2076 29 1 -0.3634 0.4821 0.9076 30 1 -0.3634 0.5448 -0.8713 31 1 -0.3633 -1.0271 -0.0362 32 1 3.1611 1.4067 -0.0361 33 1 1.6912 1.9636 -0.8713 34 1 1.7498 1.9414 0.9076 35 1 1.3108 -1.4684 1.5840 36 1 2.3928 -0.1083 1.9892 37 1 3.9741 -2.3551 -2.4357 38 1 3.1854 -3.3482 -1.1867 39 1 7.0851 -5.4307 -0.3077 40 1 7.5671 -3.7216 -0.1528 41 1 9.0817 -5.0416 -1.6746 42 1 8.2926 -3.6701 -2.4911 43 1 7.3250 -6.5645 -2.5623 44 1 9.4433 -6.1199 -3.8377 45 1 8.5904 -4.8469 -4.7434 46 1 7.7960 -7.7922 -4.6366 47 1 6.9431 -6.5192 -5.5424 48 1 9.6541 -6.5118 -6.3346 49 1 9.7422 -9.0885 -10.0383 50 1 6.3713 -4.0497 -4.0064 51 1 5.7612 -5.6976 -4.2935 52 1 4.9634 -5.8506 -1.9803 53 1 4.3090 -4.3674 -2.7184 54 1 2.2184 -0.1637 -2.0783 55 1 1.4386 -1.6524 -1.4426 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753569884.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:49 Heat of formation + Delta-G solvation = -114.100733 kcal Electronic energy + Delta-G solvation = -29861.078628 eV Core-core repulsion = 25896.313163 eV Total energy + Delta-G solvation = -3964.765465 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.48987 -40.61472 -38.92620 -36.99029 -35.49092 -35.04208 -33.66021 -33.10316 -31.95436 -30.24210 -28.46430 -28.24186 -26.96156 -26.35150 -24.41008 -24.17973 -22.90336 -22.16515 -21.31749 -20.51437 -19.68074 -19.58767 -18.19501 -17.60342 -16.85872 -16.64626 -16.45902 -16.30571 -15.86697 -15.79364 -15.64584 -15.13889 -15.03246 -14.87517 -14.63392 -14.51140 -14.35922 -14.14512 -14.12699 -13.91205 -13.61238 -13.36561 -13.20409 -12.94334 -12.89270 -12.76283 -12.54830 -12.51243 -12.34425 -12.27277 -12.14603 -12.08433 -11.83540 -11.72189 -11.69301 -11.64201 -11.42913 -11.32346 -11.18547 -10.91912 -10.70267 -10.42965 -9.60872 -9.27253 -8.02720 -5.35742 1.37797 1.41041 1.48544 1.68279 2.04319 2.48463 2.87666 3.28841 3.38354 3.51626 3.55070 3.75099 3.80881 3.84278 3.91825 4.02651 4.05094 4.15635 4.17339 4.32161 4.35186 4.35882 4.39820 4.51794 4.58127 4.59897 4.62912 4.66800 4.74048 4.76355 4.78499 4.83122 4.85793 4.89268 4.92298 4.99212 5.00541 5.03070 5.05492 5.11646 5.13302 5.18333 5.22704 5.28716 5.31105 5.40352 5.43045 5.56122 5.63486 5.76614 6.15804 6.21865 6.45569 7.08744 7.22868 7.86349 8.04330 9.18738 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021730 B = 0.001802 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.258444 B =15533.793709 C =16083.282548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 C -0.139 4.139 4 C 0.050 3.950 5 O -0.397 6.397 6 C 0.094 3.906 7 H 0.055 0.945 8 C -0.137 4.137 9 C 0.509 3.491 10 O -0.581 6.581 11 N -0.613 5.613 12 C 0.112 3.888 13 C -0.119 4.119 14 C -0.076 4.076 15 C -0.113 4.113 16 C 0.152 3.848 17 N -0.763 5.763 18 C -0.235 4.235 19 H 0.057 0.943 20 C -0.066 4.066 21 N -0.984 5.984 22 Si 0.956 3.044 23 H -0.279 1.279 24 H -0.295 1.295 25 H -0.252 1.252 26 C -0.131 4.131 27 C 0.107 3.893 28 C -0.136 4.136 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.133 0.867 38 H 0.118 0.882 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.057 0.943 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.022 0.978 47 H 0.032 0.968 48 H 0.365 0.635 49 H 0.258 0.742 50 H 0.063 0.937 51 H 0.083 0.917 52 H 0.082 0.918 53 H 0.109 0.891 54 H 0.099 0.901 55 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.094 20.081 21.662 34.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.098 4.098 3 C -0.196 4.196 4 C -0.026 4.026 5 O -0.317 6.317 6 C 0.036 3.964 7 H 0.073 0.927 8 C -0.176 4.176 9 C 0.299 3.701 10 O -0.461 6.461 11 N -0.346 5.346 12 C -0.010 4.010 13 C -0.157 4.157 14 C -0.095 4.095 15 C -0.151 4.151 16 C 0.027 3.973 17 N -0.409 5.409 18 C -0.366 4.366 19 H 0.075 0.925 20 C -0.258 4.258 21 N -0.634 5.634 22 Si 0.784 3.216 23 H -0.205 1.205 24 H -0.222 1.222 25 H -0.177 1.177 26 C -0.169 4.169 27 C -0.014 4.014 28 C -0.173 4.173 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.151 0.849 38 H 0.136 0.864 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.040 0.960 47 H 0.050 0.950 48 H 0.197 0.803 49 H 0.066 0.934 50 H 0.082 0.918 51 H 0.101 0.899 52 H 0.100 0.900 53 H 0.128 0.872 54 H 0.117 0.883 55 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.835 20.128 22.159 34.846 hybrid contribution 1.265 0.195 -0.524 1.383 sum -16.570 20.322 21.635 33.994 Atomic orbital electron populations 1.21734 0.91653 1.02666 1.02889 1.22117 0.97664 0.95923 0.94120 1.21833 1.00329 0.94474 1.02969 1.23410 0.88180 0.94344 0.96690 1.88511 1.49969 1.67257 1.26009 1.22710 0.97118 0.95367 0.81156 0.92744 1.21997 0.93541 0.99486 1.02560 1.21162 0.88063 0.79583 0.81335 1.90685 1.67464 1.54636 1.33324 1.48293 1.19868 1.26688 1.39767 1.21552 0.82674 1.00516 0.96303 1.21879 0.98718 0.99646 0.95478 1.21010 0.94701 0.99225 0.94555 1.21696 0.99202 0.98310 0.95867 1.20896 0.92733 0.96521 0.87190 1.42812 1.24703 1.48077 1.25271 1.19076 1.04420 1.13531 0.99611 0.92452 1.25538 1.02576 1.00795 0.96865 1.69885 1.39524 1.40370 1.13651 0.85386 0.79915 0.79621 0.76723 1.20500 1.22193 1.17674 1.22032 0.95295 1.01855 0.97729 1.21976 0.96186 0.96450 0.86836 1.23434 0.94575 1.00955 0.98343 0.91897 0.91171 0.91868 0.93796 0.90902 0.91800 0.90707 0.92240 0.84883 0.86387 0.90573 0.90966 0.89889 0.92430 0.90254 0.91844 0.92193 0.96011 0.95001 0.80258 0.93356 0.91791 0.89862 0.90011 0.87240 0.88286 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 8.50 71.98 0.61 -0.30 16 2 C -0.10 -1.04 0.94 -50.92 -0.05 -1.08 16 3 C -0.14 -1.44 8.46 71.98 0.61 -0.83 16 4 C 0.05 0.79 6.99 72.45 0.51 1.29 16 5 O -0.40 -9.03 10.41 -137.62 -1.43 -10.47 16 6 C 0.09 1.61 2.63 31.26 0.08 1.69 16 7 H 0.05 1.14 7.63 -2.39 -0.02 1.13 16 8 C -0.14 -1.96 3.79 29.85 0.11 -1.85 16 9 C 0.51 11.54 7.60 87.66 0.67 12.21 16 10 O -0.58 -18.60 14.95 8.34 0.12 -18.48 16 11 N -0.61 -11.81 2.97 -818.80 -2.43 -14.24 16 12 C 0.11 2.25 6.43 86.36 0.56 2.81 16 13 C -0.12 -2.28 5.36 30.67 0.16 -2.12 16 14 C -0.08 -1.54 2.15 -10.77 -0.02 -1.56 16 15 C -0.11 -3.02 4.80 30.60 0.15 -2.87 16 16 C 0.15 5.45 6.02 86.38 0.52 5.97 16 17 N -0.76 -35.48 5.41 -343.43 -1.86 -37.34 16 18 C -0.24 -13.47 10.47 84.03 0.88 -12.59 16 19 H 0.06 3.58 8.06 -2.91 -0.02 3.55 16 20 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 21 N -0.98 -63.15 13.97 21.65 0.30 -62.84 16 22 Si 0.96 45.54 27.74 68.60 1.90 47.45 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 24 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 25 H -0.25 -10.82 6.52 99.48 0.65 -10.17 16 26 C -0.13 -2.32 5.15 30.69 0.16 -2.16 16 27 C 0.11 1.50 6.34 86.38 0.55 2.05 16 28 C -0.14 -1.35 5.53 32.05 0.18 -1.17 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.41 8.12 -2.38 -0.02 0.39 16 32 H 0.04 0.60 7.53 -2.39 -0.02 0.58 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 1.01 7.81 -2.38 -0.02 0.99 16 36 H 0.06 0.96 7.84 -2.38 -0.02 0.94 16 37 H 0.13 1.16 7.70 -2.39 -0.02 1.14 16 38 H 0.12 1.29 7.94 -2.38 -0.02 1.27 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.73 7.01 -2.38 -0.02 1.72 16 41 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 45 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.03 1.13 6.53 -2.39 -0.02 1.12 16 48 H 0.36 16.20 5.53 -92.71 -0.51 15.69 16 49 H 0.26 15.74 8.31 -92.71 -0.77 14.96 16 50 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 51 H 0.08 1.56 6.50 -2.39 -0.02 1.54 16 52 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 53 H 0.11 0.97 5.93 -2.39 -0.01 0.96 16 54 H 0.10 0.73 8.04 -2.39 -0.02 0.71 16 55 H 0.10 0.71 7.94 -2.39 -0.02 0.69 16 Total: -1.00 -77.83 417.11 3.01 -74.82 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.27 Total: 25.09 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 6.13 Total: -3.99 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -3.99 Total: -114.42 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -1.31 Total: -28.94 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.90 Total: 47.45 kcal Total: -77.83 3.01 -74.82 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753569884.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.283 kcal (2) G-P(sol) polarization free energy of solvation -77.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds