Wall clock time and date at job start Tue Mar 31 2020 21:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99849 * 2 1 4 4 H 1.48505 * 109.46822 * 269.99652 * 3 2 1 5 5 H 1.48498 * 109.47357 * 29.99346 * 3 2 1 6 6 H 1.48500 * 109.47327 * 149.99601 * 3 2 1 7 7 C 1.38802 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00044 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00199 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00134 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47092 * 324.99770 * 10 9 7 12 12 C 1.53005 * 109.47094 * 84.99505 * 10 9 7 13 13 C 1.52999 * 109.47159 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47317 * 300.00546 * 13 12 10 15 15 H 1.09002 * 109.47153 * 299.99641 * 14 13 12 16 16 N 1.46500 * 109.47007 * 179.97438 * 14 13 12 17 17 C 1.34777 * 120.00075 * 84.99755 * 16 14 13 18 18 O 1.21287 * 119.99865 * 0.02562 * 17 16 14 19 19 C 1.50699 * 120.00179 * 179.97438 * 17 16 14 20 20 C 1.52999 * 109.47204 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47249 * 180.02562 * 20 19 17 22 22 C 1.52993 * 109.46954 * 179.97438 * 21 20 19 23 23 C 1.53184 * 109.54428 * 294.81741 * 22 21 20 24 24 C 1.53101 * 109.15547 * 183.24544 * 23 22 21 25 25 O 1.42901 * 109.49185 * 57.47596 * 24 23 22 26 26 C 1.42901 * 114.09718 * 298.88764 * 25 24 23 27 27 C 1.53090 * 109.41470 * 61.15482 * 26 25 24 28 28 C 1.53000 * 109.47060 * 59.99960 * 14 13 12 29 29 C 1.52997 * 109.47007 * 204.99821 * 10 9 7 30 30 H 0.97006 * 119.99987 * 0.02562 * 1 2 3 31 31 H 0.97004 * 119.99642 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47360 * 300.00194 * 12 10 9 33 33 H 1.09002 * 109.46935 * 60.00169 * 12 10 9 34 34 H 1.08996 * 109.46929 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.46716 * 60.00455 * 13 12 10 36 36 H 0.96997 * 120.00274 * 264.99726 * 16 14 13 37 37 H 1.08999 * 109.47169 * 300.00043 * 19 17 16 38 38 H 1.08999 * 109.47104 * 60.00393 * 19 17 16 39 39 H 1.09008 * 109.46871 * 299.99745 * 20 19 17 40 40 H 1.08995 * 109.47484 * 59.99653 * 20 19 17 41 41 H 1.08996 * 109.46462 * 299.99692 * 21 20 19 42 42 H 1.08999 * 109.46786 * 59.99735 * 21 20 19 43 43 H 1.09000 * 109.55094 * 54.99875 * 22 21 20 44 44 H 1.09002 * 109.52171 * 303.05893 * 23 22 21 45 45 H 1.09001 * 109.52029 * 63.24998 * 23 22 21 46 46 H 1.09000 * 109.40709 * 297.49092 * 24 23 22 47 47 H 1.09003 * 109.47780 * 177.50633 * 24 23 22 48 48 H 1.08998 * 109.48079 * 301.17360 * 26 25 24 49 49 H 1.08997 * 109.49046 * 181.14242 * 26 25 24 50 50 H 1.08998 * 109.52601 * 182.48840 * 27 26 25 51 51 H 1.09000 * 109.57851 * 62.32749 * 27 26 25 52 52 H 1.08992 * 109.47399 * 59.99823 * 28 14 13 53 53 H 1.09004 * 109.46724 * 180.02562 * 28 14 13 54 54 H 1.08993 * 109.47194 * 59.99623 * 29 10 9 55 55 H 1.09002 * 109.46695 * 299.99637 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9687 -3.5505 -0.5889 12 6 2.4221 -4.0355 1.4376 13 6 3.1865 -5.3608 1.4377 14 6 2.3089 -6.4559 0.8283 15 1 1.3982 -6.5618 1.4178 16 7 3.0412 -7.7248 0.8278 17 6 3.0327 -8.5081 1.9245 18 8 2.4185 -8.1627 2.9117 19 6 3.7855 -9.8136 1.9239 20 6 3.6133 -10.5023 3.2792 21 6 4.3781 -11.8274 3.2788 22 6 4.2064 -12.5158 4.6343 23 6 4.8702 -11.6706 5.7259 24 6 4.7641 -12.4059 7.0646 25 8 5.3730 -13.6937 6.9509 26 6 4.7619 -14.5441 5.9786 27 6 4.8698 -13.8960 4.5959 28 6 1.9450 -6.0771 -0.6088 29 6 1.1809 -4.7521 -0.6090 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 3.0470 -3.2551 1.8719 33 1 1.5114 -4.1418 2.0271 34 1 3.4462 -5.6304 2.4613 35 1 4.0972 -5.2549 0.8481 36 1 3.5321 -8.0012 0.0382 37 1 3.3942 -10.4582 1.1369 38 1 4.8436 -9.6228 1.7448 39 1 4.0044 -9.8578 4.0666 40 1 2.5552 -10.6931 3.4580 41 1 3.9874 -12.4720 2.4915 42 1 5.4362 -11.6361 3.1002 43 1 3.1448 -12.6275 4.8547 44 1 5.9206 -11.5162 5.4788 45 1 4.3663 -10.7067 5.7972 46 1 3.7138 -12.5227 7.3315 47 1 5.2737 -11.8298 7.8371 48 1 3.7115 -14.6890 6.2312 49 1 5.2697 -15.5086 5.9686 50 1 4.3656 -14.5220 3.8597 51 1 5.9198 -13.7879 4.3241 52 1 2.8556 -5.9712 -1.1983 53 1 1.3194 -6.8571 -1.0427 54 1 0.9216 -4.4822 -1.6327 55 1 0.2702 -4.8583 -0.0195 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753582750.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:54 Heat of formation + Delta-G solvation = -141.126605 kcal Electronic energy + Delta-G solvation = -29083.278745 eV Core-core repulsion = 25117.341351 eV Total energy + Delta-G solvation = -3965.937394 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.07549 -40.36602 -39.31352 -36.86602 -36.29849 -34.62356 -33.61947 -32.38815 -31.98458 -31.69913 -29.56395 -28.28029 -25.73569 -24.91025 -24.38984 -23.63669 -22.64548 -21.91645 -21.30714 -20.93920 -20.69778 -19.11938 -17.91713 -17.30737 -17.06676 -16.98346 -16.78714 -16.74816 -15.98893 -15.75462 -15.51279 -15.37722 -15.17155 -14.98211 -14.84599 -14.78412 -14.31812 -14.01138 -13.83350 -13.45119 -13.29333 -13.15733 -13.09288 -12.84716 -12.76478 -12.66963 -12.46881 -12.34619 -12.28661 -12.20752 -12.15003 -12.04297 -11.81177 -11.66251 -11.59494 -11.46038 -11.20560 -11.16239 -11.13964 -10.87622 -10.73825 -10.39186 -9.97546 -8.99884 -7.93893 -5.22133 1.46319 1.48071 1.56277 1.73719 2.26037 2.56391 2.98352 3.39004 3.65424 3.74951 3.77757 3.81815 3.87517 3.90481 3.98899 4.10082 4.18900 4.25303 4.29711 4.33071 4.37025 4.40312 4.49646 4.52685 4.55540 4.59333 4.64645 4.68289 4.74858 4.78062 4.79304 4.85707 4.88392 4.96024 5.00220 5.03787 5.10128 5.11987 5.15277 5.17220 5.20718 5.24579 5.27462 5.31996 5.46448 5.48711 5.54058 5.54510 5.60018 5.64061 6.27696 6.28836 6.67880 7.34222 7.38728 8.11928 8.34276 9.29798 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025859 B = 0.001529 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.526524 B =18309.360837 C =18961.408942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.971 3.029 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.271 1.271 7 C -0.238 4.238 8 H 0.075 0.925 9 N -0.740 5.740 10 C 0.173 3.827 11 H 0.048 0.952 12 C -0.123 4.123 13 C -0.111 4.111 14 C 0.152 3.848 15 H 0.059 0.941 16 N -0.713 5.713 17 C 0.503 3.497 18 O -0.593 6.593 19 C -0.131 4.131 20 C -0.103 4.103 21 C -0.103 4.103 22 C -0.091 4.091 23 C -0.151 4.151 24 C 0.055 3.945 25 O -0.407 6.407 26 C 0.052 3.948 27 C -0.146 4.146 28 C -0.104 4.104 29 C -0.114 4.114 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.039 0.961 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.418 0.582 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.051 0.949 47 H 0.096 0.904 48 H 0.052 0.948 49 H 0.103 0.897 50 H 0.089 0.911 51 H 0.070 0.930 52 H 0.088 0.912 53 H 0.088 0.912 54 H 0.067 0.933 55 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.033 -33.349 3.720 35.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.800 3.200 4 H -0.212 1.212 5 H -0.224 1.224 6 H -0.196 1.196 7 C -0.370 4.370 8 H 0.093 0.907 9 N -0.379 5.379 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.164 4.164 13 C -0.150 4.150 14 C 0.046 3.954 15 H 0.077 0.923 16 N -0.365 5.365 17 C 0.291 3.709 18 O -0.473 6.473 19 C -0.170 4.170 20 C -0.141 4.141 21 C -0.141 4.141 22 C -0.110 4.110 23 C -0.189 4.189 24 C -0.021 4.021 25 O -0.327 6.327 26 C -0.024 4.024 27 C -0.183 4.183 28 C -0.143 4.143 29 C -0.153 4.153 30 H 0.059 0.941 31 H 0.202 0.798 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.255 0.745 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.114 0.886 48 H 0.071 0.929 49 H 0.121 0.879 50 H 0.107 0.893 51 H 0.088 0.912 52 H 0.107 0.893 53 H 0.106 0.894 54 H 0.086 0.914 55 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.913 -33.048 4.505 35.418 hybrid contribution -0.451 1.637 -0.013 1.698 sum 11.463 -31.411 4.491 33.738 Atomic orbital electron populations 1.69825 1.06617 1.25907 1.59857 1.25545 0.96356 1.01047 1.04049 0.85170 0.77635 0.79669 0.77487 1.21188 1.22433 1.19607 1.19639 0.91412 0.85344 1.40579 0.90685 1.42678 1.05430 1.01156 1.88599 1.20490 0.94562 0.85032 0.93472 0.93356 1.22034 0.98897 0.96013 0.99482 1.21747 0.99000 0.93921 1.00340 1.20781 0.94334 0.82787 0.97460 0.92291 1.46011 1.52941 1.20556 1.16995 1.21547 0.80438 0.86821 0.82088 1.90710 1.45944 1.75444 1.35198 1.21731 1.02199 0.92226 1.00886 1.21331 1.00464 0.96467 0.95884 1.21563 1.00813 0.95124 0.96576 1.21217 0.99564 0.94870 0.95335 1.22273 1.01755 0.99384 0.95479 1.22670 0.97980 0.83835 0.97619 1.87897 1.58715 1.26181 1.59878 1.22761 0.98120 0.93813 0.87745 1.22212 1.01962 0.96346 0.97795 1.21633 1.01688 0.96442 0.94494 1.21639 0.98363 0.94338 1.00958 0.94148 0.79764 0.94210 0.94529 0.93649 0.90534 0.74510 0.86184 0.86572 0.92943 0.93032 0.90196 0.90985 0.91522 0.91318 0.90997 0.93049 0.88570 0.92920 0.87864 0.89291 0.91169 0.89313 0.89368 0.91428 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.42 13.06 21.65 0.28 -60.14 16 2 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 3 Si 0.97 46.75 29.55 68.60 2.03 48.77 16 4 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.24 -13.36 9.93 84.03 0.83 -12.53 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.74 -37.83 5.12 -322.93 -1.65 -39.48 16 10 C 0.17 6.73 2.77 44.99 0.12 6.85 16 11 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 12 C -0.12 -4.62 5.50 30.60 0.17 -4.45 16 13 C -0.11 -3.20 5.49 30.59 0.17 -3.03 16 14 C 0.15 3.73 2.45 44.99 0.11 3.84 16 15 H 0.06 1.82 7.58 -2.39 -0.02 1.80 16 16 N -0.71 -12.61 5.08 -442.53 -2.25 -14.86 16 17 C 0.50 10.54 7.79 87.66 0.68 11.23 16 18 O -0.59 -18.94 15.65 -3.05 -0.05 -18.99 16 19 C -0.13 -1.47 5.70 29.85 0.17 -1.30 16 20 C -0.10 -1.44 4.26 30.59 0.13 -1.31 16 21 C -0.10 -0.93 4.69 30.59 0.14 -0.78 16 22 C -0.09 -0.99 2.27 -10.67 -0.02 -1.01 16 23 C -0.15 -1.98 5.10 30.69 0.16 -1.82 16 24 C 0.06 0.77 6.84 72.02 0.49 1.27 16 25 O -0.41 -6.79 10.77 -148.98 -1.60 -8.40 16 26 C 0.05 0.57 6.84 72.01 0.49 1.07 16 27 C -0.15 -1.31 5.43 30.69 0.17 -1.14 16 28 C -0.10 -2.24 5.39 30.58 0.16 -2.08 16 29 C -0.11 -3.54 5.39 30.58 0.16 -3.37 16 30 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 31 H 0.37 20.49 7.80 -92.71 -0.72 19.77 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.42 4.09 8.60 -92.71 -0.80 3.30 16 37 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.05 0.94 6.61 -2.38 -0.02 0.93 16 40 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 41 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.07 1.04 6.74 -2.39 -0.02 1.02 16 46 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 51 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 53 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 54 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 55 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -74.87 424.39 0.70 -74.17 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: -0.67 Total: 31.58 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: 4.61 Total: -12.66 kcal Atomic # 7 Polarization: -110.86 SS G_CDS: -3.62 Total: -114.48 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -1.65 Total: -27.39 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Total: -74.87 0.70 -74.17 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753582750.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.958 kcal (2) G-P(sol) polarization free energy of solvation -74.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds