Wall clock time and date at job start Tue Mar 31 2020 21:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00041 * 2 1 4 4 H 1.48498 * 109.47131 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47400 * 300.00686 * 3 2 1 6 6 H 1.48505 * 109.46692 * 60.00233 * 3 2 1 7 7 C 1.38810 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99803 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99992 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99862 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47100 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47418 * 185.28322 * 11 10 9 13 13 H 1.08994 * 109.58344 * 58.38924 * 12 11 10 14 14 C 1.53193 * 109.58366 * 298.10944 * 12 11 10 15 15 C 1.53344 * 109.15015 * 185.55987 * 14 12 11 16 16 C 1.53035 * 109.60647 * 61.29028 * 15 14 12 17 17 C 1.53194 * 109.31399 * 298.62584 * 16 15 14 18 18 N 1.46924 * 109.58952 * 178.68103 * 12 11 10 19 19 C 1.34777 * 120.63104 * 353.50798 * 18 12 11 20 20 O 1.21288 * 120.00050 * 5.13050 * 19 18 12 21 21 C 1.50693 * 120.00269 * 185.12223 * 19 18 12 22 22 C 1.52999 * 109.47347 * 180.02562 * 21 19 18 23 23 C 1.53000 * 109.47225 * 180.02562 * 22 21 19 24 24 H 1.08997 * 109.48078 * 305.00007 * 23 22 21 25 25 C 1.53090 * 109.47991 * 184.97339 * 23 22 21 26 26 C 1.53181 * 109.16150 * 182.42136 * 25 23 22 27 27 C 1.53174 * 109.04939 * 56.96568 * 26 25 23 28 28 C 1.53095 * 109.16130 * 303.02905 * 27 26 25 29 29 O 1.42901 * 109.41636 * 57.60619 * 28 27 26 30 30 H 0.97003 * 119.99993 * 359.97438 * 1 2 3 31 31 H 0.96994 * 119.99898 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47153 * 59.99438 * 10 9 7 33 33 H 1.09001 * 109.46644 * 299.99465 * 10 9 7 34 34 H 1.09000 * 109.47811 * 65.27823 * 11 10 9 35 35 H 1.09009 * 109.46796 * 305.28001 * 11 10 9 36 36 H 1.08998 * 109.49738 * 305.38919 * 14 12 11 37 37 H 1.09010 * 109.49573 * 65.48013 * 14 12 11 38 38 H 1.08996 * 109.43613 * 301.24472 * 15 14 12 39 39 H 1.08998 * 109.41111 * 181.32134 * 15 14 12 40 40 H 1.08999 * 109.50216 * 178.67197 * 16 15 14 41 41 H 1.09002 * 109.52781 * 58.59185 * 16 15 14 42 42 H 1.08995 * 109.58856 * 294.84305 * 17 16 15 43 43 H 1.09000 * 109.58850 * 174.42115 * 17 16 15 44 44 H 1.08999 * 109.47400 * 300.00732 * 21 19 18 45 45 H 1.09002 * 109.46812 * 60.00381 * 21 19 18 46 46 H 1.09002 * 109.47255 * 299.99943 * 22 21 19 47 47 H 1.08995 * 109.47097 * 59.99810 * 22 21 19 48 48 H 1.09000 * 109.52876 * 302.31888 * 25 23 22 49 49 H 1.09005 * 109.52334 * 62.50574 * 25 23 22 50 50 H 1.09001 * 109.53569 * 297.09817 * 26 25 23 51 51 H 1.09004 * 109.61611 * 176.88104 * 26 25 23 52 52 H 1.08992 * 109.52293 * 183.12045 * 27 26 25 53 53 H 1.09006 * 109.52137 * 62.92811 * 27 26 25 54 54 H 1.09002 * 109.47675 * 297.62246 * 28 27 26 55 55 H 1.08996 * 109.48036 * 177.58763 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 6 1.8242 -6.1408 0.1316 13 1 2.4097 -6.1345 1.0509 14 6 2.7571 -6.3194 -1.0703 15 6 3.4091 -7.7055 -0.9993 16 6 2.3268 -8.7858 -1.0598 17 6 1.3893 -8.6315 0.1419 18 7 0.8698 -7.2574 0.1630 19 6 -0.4570 -7.0255 0.2109 20 8 -0.8774 -5.8904 0.1346 21 6 -1.4183 -8.1765 0.3590 22 6 -2.8521 -7.6434 0.3858 23 6 -3.8280 -8.8121 0.5369 24 1 -3.6496 -9.5394 -0.2551 25 6 -5.2650 -8.2931 0.4393 26 6 -6.2360 -9.4586 0.6518 27 6 -5.9443 -10.1118 2.0062 28 6 -4.4811 -10.5605 2.0431 29 8 -3.6329 -9.4346 1.8084 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3880 0.0002 32 1 2.6848 -3.7144 0.8894 33 1 2.6847 -3.7144 -0.8906 34 1 0.5015 -4.8165 -0.9348 35 1 0.3763 -4.7103 0.8376 36 1 2.1825 -6.2348 -1.9926 37 1 3.5284 -5.5493 -1.0497 38 1 3.9630 -7.7984 -0.0653 39 1 4.0918 -7.8281 -1.8401 40 1 2.7935 -9.7704 -1.0330 41 1 1.7562 -8.6787 -1.9823 42 1 1.9393 -8.8285 1.0621 43 1 0.5608 -9.3340 0.0516 44 1 -1.3004 -8.8590 -0.4826 45 1 -1.2099 -8.7065 1.2885 46 1 -2.9703 -6.9608 1.2274 47 1 -3.0602 -7.1137 -0.5437 48 1 -5.4317 -7.5360 1.2055 49 1 -5.4288 -7.8574 -0.5463 50 1 -6.1037 -10.1928 -0.1430 51 1 -7.2610 -9.0880 0.6389 52 1 -6.5940 -10.9765 2.1411 53 1 -6.1246 -9.3915 2.8043 54 1 -4.3114 -11.3107 1.2707 55 1 -4.2563 -10.9874 3.0205 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753786485.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:06 Heat of formation + Delta-G solvation = -107.271352 kcal Electronic energy + Delta-G solvation = -30490.203046 eV Core-core repulsion = 26525.733725 eV Total energy + Delta-G solvation = -3964.469320 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 3.14 seconds Orbital eigenvalues (eV) -41.60781 -40.32970 -38.48017 -37.00027 -35.21805 -34.52599 -34.29688 -33.76642 -32.44030 -30.89035 -29.27700 -27.21978 -26.04955 -25.31823 -24.83945 -23.92222 -22.70673 -22.04207 -21.56697 -21.16551 -19.76492 -19.21173 -17.71325 -17.50956 -17.14661 -16.80373 -16.55690 -16.42379 -15.73317 -15.58072 -15.50304 -15.38682 -15.25361 -15.01109 -14.85756 -14.66519 -14.43734 -14.21952 -14.08025 -13.64573 -13.56815 -13.35773 -13.04338 -12.93848 -12.81958 -12.72739 -12.63563 -12.33706 -12.13910 -12.09776 -12.06563 -11.93308 -11.86619 -11.81302 -11.76258 -11.55603 -11.49969 -11.35121 -11.15184 -10.95533 -10.32949 -9.97238 -9.46393 -9.03269 -7.96327 -5.27439 1.43393 1.46737 1.56937 1.73032 2.03659 2.54170 2.87009 3.35746 3.46193 3.72357 3.79257 3.86884 3.92851 3.96307 3.99874 4.07193 4.10709 4.15117 4.16600 4.27865 4.31015 4.36621 4.43407 4.49789 4.51035 4.58744 4.62375 4.65692 4.74395 4.75019 4.78787 4.83702 4.87327 4.93181 4.94349 5.00055 5.01585 5.09905 5.12857 5.15330 5.18186 5.20864 5.24783 5.30338 5.39922 5.40628 5.41926 5.49703 5.52389 5.75413 6.24748 6.36984 6.54070 7.28838 7.33071 8.05943 8.30638 9.28139 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010129 B = 0.002576 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.755284 B =10867.009072 C =13295.800447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.084 4.084 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.248 4.248 8 H 0.079 0.921 9 N -0.749 5.749 10 C 0.147 3.853 11 C -0.088 4.088 12 C 0.155 3.845 13 H 0.076 0.924 14 C -0.129 4.129 15 C -0.116 4.116 16 C -0.130 4.130 17 C 0.101 3.899 18 N -0.610 5.610 19 C 0.495 3.505 20 O -0.574 6.574 21 C -0.121 4.121 22 C -0.096 4.096 23 C 0.099 3.901 24 H 0.079 0.921 25 C -0.156 4.156 26 C -0.120 4.120 27 C -0.157 4.157 28 C 0.055 3.945 29 O -0.399 6.399 30 H 0.251 0.749 31 H 0.369 0.631 32 H 0.017 0.983 33 H 0.023 0.977 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.109 0.891 44 H 0.119 0.881 45 H 0.111 0.889 46 H 0.047 0.953 47 H 0.073 0.927 48 H 0.053 0.947 49 H 0.077 0.923 50 H 0.076 0.924 51 H 0.070 0.930 52 H 0.090 0.910 53 H 0.057 0.943 54 H 0.065 0.935 55 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 -33.318 0.072 33.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.275 4.275 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.379 4.379 8 H 0.097 0.903 9 N -0.391 5.391 10 C 0.020 3.980 11 C -0.126 4.126 12 C 0.052 3.948 13 H 0.094 0.906 14 C -0.167 4.167 15 C -0.153 4.153 16 C -0.168 4.168 17 C -0.020 4.020 18 N -0.344 5.344 19 C 0.285 3.715 20 O -0.454 6.454 21 C -0.161 4.161 22 C -0.134 4.134 23 C 0.041 3.959 24 H 0.097 0.903 25 C -0.194 4.194 26 C -0.158 4.158 27 C -0.195 4.195 28 C -0.021 4.021 29 O -0.319 6.319 30 H 0.060 0.940 31 H 0.200 0.800 32 H 0.035 0.965 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.123 0.877 41 H 0.078 0.922 42 H 0.101 0.899 43 H 0.127 0.873 44 H 0.137 0.863 45 H 0.129 0.871 46 H 0.066 0.934 47 H 0.092 0.908 48 H 0.072 0.928 49 H 0.096 0.904 50 H 0.094 0.906 51 H 0.089 0.911 52 H 0.109 0.891 53 H 0.076 0.924 54 H 0.083 0.917 55 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.169 -32.595 0.167 32.861 hybrid contribution -0.480 1.638 -0.095 1.709 sum -4.650 -30.957 0.072 31.304 Atomic orbital electron populations 1.69892 1.06964 1.26068 1.59546 1.25752 0.96519 1.01633 1.03622 0.84939 0.78191 0.79012 0.76789 1.18619 1.21760 1.21795 1.19755 0.91590 0.85301 1.41276 0.90306 1.42658 1.05568 1.01555 1.89322 1.20994 0.94173 0.85528 0.97294 1.21891 0.96028 0.92681 1.01981 1.21118 0.89805 0.84873 0.99046 0.90606 1.22048 0.98431 0.99398 0.96855 1.21576 0.97932 0.92644 1.03164 1.21920 0.96848 1.00196 0.97835 1.22088 0.99411 0.80787 0.99747 1.48312 1.05002 1.08104 1.72962 1.21507 0.83436 0.91136 0.75377 1.90861 1.78476 1.25179 1.50867 1.21646 0.92641 0.95919 1.05884 1.21317 0.93077 0.96615 1.02368 1.22071 0.93645 0.93990 0.86154 0.90336 1.22230 0.95504 0.98989 1.02641 1.21594 0.99189 0.97277 0.97728 1.22206 0.97832 1.01724 0.97735 1.22739 0.89129 0.87624 1.02589 1.87927 1.61143 1.46400 1.36387 0.93986 0.79976 0.96483 0.95867 0.93710 0.92588 0.93100 0.91036 0.90793 0.90594 0.87719 0.92197 0.89909 0.87283 0.86314 0.87128 0.93381 0.90845 0.92816 0.90439 0.90551 0.91150 0.89128 0.92449 0.91707 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.02 13.06 21.65 0.28 -64.74 16 2 C -0.08 -5.21 5.50 84.86 0.47 -4.75 16 3 Si 0.98 49.12 29.55 68.60 2.03 51.15 16 4 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 6 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 7 C -0.25 -15.22 9.99 84.03 0.84 -14.38 16 8 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 9 N -0.75 -44.07 5.60 -343.45 -1.92 -46.00 16 10 C 0.15 6.84 5.81 86.38 0.50 7.34 16 11 C -0.09 -3.63 3.24 30.59 0.10 -3.53 16 12 C 0.16 4.58 2.98 44.98 0.13 4.71 16 13 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 14 C -0.13 -3.20 4.94 30.77 0.15 -3.05 16 15 C -0.12 -1.85 5.89 30.72 0.18 -1.67 16 16 C -0.13 -1.58 6.08 30.67 0.19 -1.39 16 17 C 0.10 1.38 6.33 86.36 0.55 1.93 16 18 N -0.61 -14.92 2.97 -795.05 -2.36 -17.28 16 19 C 0.50 14.34 7.61 87.65 0.67 15.00 16 20 O -0.57 -23.27 11.39 -3.05 -0.03 -23.30 16 21 C -0.12 -2.35 4.00 29.85 0.12 -2.23 16 22 C -0.10 -2.18 4.21 30.59 0.13 -2.05 16 23 C 0.10 1.70 2.64 30.62 0.08 1.78 16 24 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 25 C -0.16 -2.64 5.42 30.68 0.17 -2.48 16 26 C -0.12 -1.50 6.03 30.71 0.19 -1.31 16 27 C -0.16 -1.84 6.14 30.68 0.19 -1.66 16 28 C 0.06 0.67 6.84 72.01 0.49 1.17 16 29 O -0.40 -7.42 9.94 -148.98 -1.48 -8.90 16 30 H 0.25 16.04 8.31 -92.71 -0.77 15.27 16 31 H 0.37 23.70 7.67 -92.71 -0.71 22.99 16 32 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.02 1.05 6.90 -2.39 -0.02 1.03 16 34 H 0.04 2.06 7.13 -2.39 -0.02 2.04 16 35 H 0.06 2.67 6.34 -2.38 -0.02 2.65 16 36 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.88 6.91 -2.38 -0.02 1.87 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.11 0.96 5.96 -2.39 -0.01 0.95 16 44 H 0.12 1.52 7.48 -2.39 -0.02 1.51 16 45 H 0.11 1.88 7.79 -2.39 -0.02 1.87 16 46 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 47 H 0.07 1.81 8.10 -2.39 -0.02 1.80 16 48 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 50 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 52 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 53 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 54 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 55 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -81.58 414.41 1.77 -79.81 By element: Atomic # 1 Polarization: 35.70 SS G_CDS: 0.13 Total: 35.83 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 5.14 Total: -6.56 kcal Atomic # 7 Polarization: -124.02 SS G_CDS: -4.01 Total: -128.02 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -1.52 Total: -32.20 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 2.03 Total: 51.15 kcal Total: -81.58 1.77 -79.81 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753786485.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.463 kcal (2) G-P(sol) polarization free energy of solvation -81.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.15 seconds