Wall clock time and date at job start Tue Mar 31 2020 21:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99511 * 2 1 4 4 C 1.53004 * 109.46929 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47201 * 64.99892 * 4 3 2 6 6 C 1.36934 * 120.00259 * 270.00088 * 5 4 3 7 7 H 1.07995 * 120.00285 * 143.39635 * 6 5 4 8 8 C 1.38816 * 119.99791 * 323.39869 * 6 5 4 9 9 N 1.31615 * 119.99790 * 338.05728 * 8 6 5 10 10 Si 1.86795 * 119.99877 * 158.05274 * 8 6 5 11 11 H 1.48496 * 109.47478 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46945 * 120.00326 * 10 8 6 13 13 H 1.48505 * 109.47128 * 239.99959 * 10 8 6 14 14 C 1.46503 * 120.00068 * 89.99986 * 5 4 3 15 15 C 1.53032 * 109.46225 * 116.77447 * 14 5 4 16 16 C 1.53193 * 109.31700 * 181.38511 * 15 14 5 17 17 N 1.46918 * 108.77583 * 305.36967 * 16 15 14 18 18 C 1.34779 * 120.63116 * 233.58420 * 17 16 15 19 19 O 1.21279 * 119.99757 * 354.81710 * 18 17 16 20 20 C 1.50698 * 120.00021 * 175.10066 * 18 17 16 21 21 C 1.52997 * 110.01929 * 65.84351 * 20 18 17 22 22 C 1.54263 * 110.03289 * 304.44925 * 20 18 17 23 23 C 1.54963 * 104.16316 * 217.13917 * 22 20 18 24 24 C 1.54891 * 102.77497 * 37.88643 * 23 22 20 25 25 C 1.53883 * 110.02984 * 187.23338 * 20 18 17 26 26 C 1.46931 * 118.74151 * 53.85399 * 17 16 15 27 27 C 1.53039 * 109.46170 * 236.84656 * 14 5 4 28 28 H 1.09000 * 109.47212 * 60.00463 * 1 2 3 29 29 H 1.09002 * 109.46754 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47484 * 299.99877 * 1 2 3 31 31 H 1.09005 * 109.47202 * 60.00233 * 3 2 1 32 32 H 1.09000 * 109.47168 * 300.00148 * 3 2 1 33 33 H 1.08994 * 109.47067 * 304.99593 * 4 3 2 34 34 H 1.09004 * 109.46828 * 184.99846 * 4 3 2 35 35 H 0.97007 * 120.00011 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.44544 * 356.81079 * 14 5 4 37 37 H 1.08999 * 109.49775 * 61.43269 * 15 14 5 38 38 H 1.09006 * 109.49932 * 301.33946 * 15 14 5 39 39 H 1.09001 * 109.59206 * 185.57573 * 16 15 14 40 40 H 1.09005 * 109.58018 * 65.15200 * 16 15 14 41 41 H 1.09000 * 109.47452 * 55.44782 * 21 20 18 42 42 H 1.09000 * 109.47130 * 175.44828 * 21 20 18 43 43 H 1.09000 * 109.47365 * 295.44813 * 21 20 18 44 44 H 1.09007 * 110.48865 * 335.78401 * 22 20 18 45 45 H 1.09001 * 110.48753 * 98.43061 * 22 20 18 46 46 H 1.08997 * 110.72424 * 279.57539 * 23 22 20 47 47 H 1.09003 * 110.76676 * 156.22282 * 23 22 20 48 48 H 1.09001 * 110.48523 * 203.40121 * 24 23 22 49 49 H 1.09008 * 110.48626 * 80.76742 * 24 23 22 50 50 H 1.08997 * 110.03016 * 238.56343 * 25 20 18 51 51 H 1.08999 * 110.03184 * 359.97438 * 25 20 18 52 52 H 1.08999 * 109.58514 * 65.92827 * 26 17 16 53 53 H 1.09003 * 109.58683 * 186.35384 * 26 17 16 54 54 H 1.09002 * 109.49513 * 298.56642 * 27 14 5 55 55 H 1.09001 * 109.50136 * 58.65930 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2508 6 6 4.0979 -0.7973 -1.3344 7 1 3.8382 -1.3073 -2.2502 8 6 4.5545 -1.5218 -0.2419 9 7 5.2642 -0.9259 0.6927 10 14 4.1617 -3.3423 -0.0983 11 1 3.3563 -3.7689 -1.2707 12 1 5.4262 -4.1198 -0.0576 13 1 3.3908 -3.5856 1.1474 14 6 4.2882 1.4000 -2.4130 15 6 5.7678 1.2439 -2.7712 16 6 6.0979 2.1454 -3.9650 17 7 5.1747 1.8319 -5.0640 18 6 5.6447 1.5215 -6.2884 19 8 6.8338 1.5905 -6.5168 20 6 4.6921 1.0950 -7.3754 21 6 3.7715 2.2579 -7.7511 22 6 3.8543 -0.1102 -6.9009 23 6 3.7079 -0.9921 -8.1667 24 6 5.0929 -0.8498 -8.8454 25 6 5.4791 0.6253 -8.6116 26 6 3.7289 1.8688 -4.8044 27 6 3.4256 0.9650 -3.5999 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6884 1.8464 -0.8900 33 1 3.8507 0.5688 0.8427 34 1 3.9783 2.1768 0.0902 35 1 5.5837 -1.4322 1.4560 36 1 4.0801 2.4433 -2.1758 37 1 5.9713 0.2054 -3.0324 38 1 6.3813 1.5317 -1.9174 39 1 7.1236 1.9649 -4.2867 40 1 5.9817 3.1903 -3.6769 41 1 4.3737 3.1222 -8.0312 42 1 3.1419 1.9660 -8.5916 43 1 3.1431 2.5140 -6.8981 44 1 4.3793 -0.6544 -6.1158 45 1 2.8765 0.2195 -6.5496 46 1 2.9192 -0.6092 -8.8144 47 1 3.5158 -2.0300 -7.8946 48 1 5.0183 -1.0601 -9.9123 49 1 5.8184 -1.5134 -8.3747 50 1 5.2045 1.2252 -9.4791 51 1 6.5500 0.7063 -8.4253 52 1 3.4234 2.8915 -4.5835 53 1 3.1910 1.5057 -5.6802 54 1 3.6511 -0.0709 -3.8532 55 1 2.3718 1.0543 -3.3358 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754560050.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:40 Heat of formation + Delta-G solvation = -76.560874 kcal Electronic energy + Delta-G solvation = -32521.526176 eV Core-core repulsion = 28558.388562 eV Total energy + Delta-G solvation = -3963.137614 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.89509 -39.42594 -38.51986 -38.08789 -36.55607 -33.88052 -32.91434 -32.05720 -31.37978 -29.73820 -29.55955 -27.13787 -26.92136 -26.18376 -24.83702 -24.17162 -22.75815 -21.95854 -21.59144 -20.94540 -19.62126 -18.20458 -17.81716 -17.35718 -17.06305 -16.64404 -16.50784 -16.23017 -16.07248 -15.70573 -15.51805 -15.38259 -15.17520 -14.84910 -14.68501 -14.48003 -14.15965 -13.78046 -13.57910 -13.38771 -13.31591 -13.14449 -13.06650 -12.85008 -12.76197 -12.58674 -12.50925 -12.32522 -12.19979 -12.09025 -12.00392 -11.89663 -11.72256 -11.69151 -11.58405 -11.45764 -11.38482 -11.33532 -11.02941 -10.55362 -10.36021 -10.27010 -9.58808 -8.42779 -7.69928 -5.25704 1.43760 1.48220 1.54874 1.64080 2.07484 2.58726 3.25869 3.38485 3.42393 3.54243 3.63933 3.74654 3.90798 4.10796 4.17626 4.25959 4.32565 4.39030 4.42626 4.45510 4.48715 4.50031 4.55615 4.58328 4.66013 4.68381 4.73075 4.73912 4.80378 4.83079 4.86907 4.91813 4.92644 4.94173 4.96551 5.01287 5.03129 5.10508 5.13868 5.17482 5.22270 5.26817 5.35198 5.40408 5.47801 5.52458 5.63381 5.71262 5.79341 5.90287 6.49963 6.54000 6.72971 7.19708 7.31650 8.02002 8.50052 9.26742 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012422 B = 0.003678 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.608443 B = 7610.745015 C = 7827.791211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.057 3.943 4 C 0.139 3.861 5 N -0.583 5.583 6 C -0.212 4.212 7 H 0.045 0.955 8 C -0.031 4.031 9 N -0.920 5.920 10 Si 0.936 3.064 11 H -0.273 1.273 12 H -0.302 1.302 13 H -0.295 1.295 14 C 0.173 3.827 15 C -0.120 4.120 16 C 0.121 3.879 17 N -0.601 5.601 18 C 0.516 3.484 19 O -0.592 6.592 20 C -0.079 4.079 21 C -0.141 4.141 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.114 4.114 26 C 0.096 3.904 27 C -0.126 4.126 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.243 0.757 36 H 0.067 0.933 37 H 0.029 0.971 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.056 0.944 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.041 0.959 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.068 0.932 48 H 0.086 0.914 49 H 0.044 0.956 50 H 0.089 0.911 51 H 0.055 0.945 52 H 0.090 0.910 53 H 0.121 0.879 54 H 0.042 0.958 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.254 8.417 -15.701 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.021 4.021 4 C 0.012 3.988 5 N -0.302 5.302 6 C -0.343 4.343 7 H 0.063 0.937 8 C -0.227 4.227 9 N -0.566 5.566 10 Si 0.767 3.233 11 H -0.198 1.198 12 H -0.230 1.230 13 H -0.223 1.223 14 C 0.066 3.934 15 C -0.160 4.160 16 C -0.002 4.002 17 N -0.332 5.332 18 C 0.305 3.695 19 O -0.474 6.474 20 C -0.082 4.082 21 C -0.198 4.198 22 C -0.154 4.154 23 C -0.154 4.154 24 C -0.161 4.161 25 C -0.152 4.152 26 C -0.025 4.025 27 C -0.166 4.166 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.112 0.888 43 H 0.098 0.902 44 H 0.060 0.940 45 H 0.115 0.885 46 H 0.113 0.887 47 H 0.087 0.913 48 H 0.105 0.895 49 H 0.063 0.937 50 H 0.107 0.893 51 H 0.073 0.927 52 H 0.108 0.892 53 H 0.138 0.862 54 H 0.061 0.939 55 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.465 8.236 -15.654 20.061 hybrid contribution 0.410 -1.190 1.084 1.661 sum -9.055 7.046 -14.570 18.545 Atomic orbital electron populations 1.22803 0.81712 1.02439 1.00072 1.88151 1.19459 1.28819 1.95179 1.23228 0.96539 0.83911 0.98437 1.20979 0.89878 0.96179 0.91735 1.43925 1.75453 1.02138 1.08727 1.18761 1.34078 0.83212 0.98273 0.93745 1.25434 0.97855 0.99680 0.99700 1.70077 1.37232 1.36223 1.13100 0.85700 0.76733 0.83555 0.77345 1.19798 1.23012 1.22250 1.20537 0.91284 0.93826 0.87710 1.22126 0.99650 0.98223 0.96028 1.21523 0.93508 0.99101 0.86091 1.48135 1.08269 1.67590 1.09227 1.21260 0.89045 0.75297 0.83853 1.90600 1.19142 1.55675 1.81954 1.21436 0.95279 0.98188 0.93323 1.22132 0.98580 0.95352 1.03775 1.22661 0.99705 0.94697 0.98304 1.22520 0.97455 0.99653 0.95754 1.22366 0.96997 0.95291 1.01491 1.22222 0.99909 0.97024 0.96003 1.22598 0.79192 1.01094 0.99662 1.22230 1.00259 0.99082 0.95013 0.93486 0.90292 0.93824 0.93916 0.93694 0.91777 0.93074 0.94738 0.91469 0.95180 0.93297 0.91771 0.89836 0.92514 0.88847 0.90158 0.93996 0.88470 0.88722 0.91348 0.89544 0.93665 0.89281 0.92674 0.89217 0.86158 0.93899 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.02 16 2 O -0.40 -16.34 10.18 -148.98 -1.52 -17.86 16 3 C 0.06 2.11 6.28 71.98 0.45 2.56 16 4 C 0.14 6.10 5.68 86.38 0.49 6.60 16 5 N -0.58 -26.63 2.35 -677.90 -1.59 -28.22 16 6 C -0.21 -11.20 7.83 84.04 0.66 -10.55 16 7 H 0.04 2.43 6.77 -2.91 -0.02 2.41 16 8 C -0.03 -1.72 4.95 84.86 0.42 -1.30 16 9 N -0.92 -54.00 11.43 21.65 0.25 -53.75 16 10 Si 0.94 46.73 29.61 68.60 2.03 48.76 16 11 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 13 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 14 C 0.17 6.38 2.58 45.01 0.12 6.50 16 15 C -0.12 -4.71 5.35 30.67 0.16 -4.55 16 16 C 0.12 3.94 6.41 86.36 0.55 4.50 16 17 N -0.60 -17.55 2.96 -818.07 -2.42 -19.97 16 18 C 0.52 15.97 6.35 87.66 0.56 16.53 16 19 O -0.59 -23.19 14.68 -3.03 -0.04 -23.24 16 20 C -0.08 -1.75 0.61 -52.20 -0.03 -1.78 16 21 C -0.14 -2.13 7.89 71.98 0.57 -1.57 16 22 C -0.12 -2.45 4.52 31.69 0.14 -2.30 16 23 C -0.12 -1.98 6.91 31.91 0.22 -1.76 16 24 C -0.12 -2.38 6.83 31.67 0.22 -2.17 16 25 C -0.11 -2.50 6.05 31.32 0.19 -2.31 16 26 C 0.10 2.22 4.69 86.51 0.41 2.63 16 27 C -0.13 -3.90 5.25 30.82 0.16 -3.74 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.04 1.38 8.14 -2.38 -0.02 1.37 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 3.42 5.46 -2.39 -0.01 3.41 16 34 H 0.05 2.05 7.95 -2.38 -0.02 2.03 16 35 H 0.24 14.09 8.31 -92.70 -0.77 13.32 16 36 H 0.07 2.21 7.82 -2.38 -0.02 2.19 16 37 H 0.03 1.39 7.78 -2.39 -0.02 1.37 16 38 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 39 H 0.06 2.34 7.04 -2.39 -0.02 2.32 16 40 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.08 1.04 5.21 -2.39 -0.01 1.03 16 44 H 0.04 1.18 7.85 -2.38 -0.02 1.16 16 45 H 0.10 1.65 6.12 -2.39 -0.01 1.63 16 46 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 50 H 0.09 1.53 7.67 -2.39 -0.02 1.51 16 51 H 0.05 1.59 6.42 -2.39 -0.02 1.57 16 52 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 53 H 0.12 2.21 2.21 -2.39 -0.01 2.21 16 54 H 0.04 1.58 6.95 -2.39 -0.02 1.56 16 55 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -70.66 407.43 4.09 -66.57 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.85 Total: 18.40 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 6.53 Total: 9.31 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -3.77 Total: -101.95 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -1.56 Total: -41.10 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -70.66 4.09 -66.57 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754560050.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.989 kcal (2) G-P(sol) polarization free energy of solvation -70.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds