Wall clock time and date at job start Tue Mar 31 2020 20:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00499 * 2 1 4 4 H 1.48501 * 109.47351 * 270.00040 * 3 2 1 5 5 H 1.48507 * 109.47076 * 29.99823 * 3 2 1 6 6 H 1.48501 * 109.47504 * 150.00049 * 3 2 1 7 7 C 1.38816 * 119.99339 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99453 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99651 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46862 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47156 * 295.00301 * 11 10 9 13 13 N 1.46496 * 109.46938 * 55.00584 * 11 10 9 14 14 C 1.34780 * 119.99773 * 244.80209 * 13 11 10 15 15 O 1.21290 * 119.99695 * 355.04127 * 14 13 11 16 16 C 1.50700 * 120.00031 * 174.76709 * 14 13 11 17 17 O 1.42903 * 109.46790 * 180.27434 * 16 14 13 18 18 C 1.42904 * 113.99630 * 180.02562 * 17 16 14 19 19 C 1.53004 * 109.46856 * 269.99917 * 18 17 16 20 20 C 1.52999 * 109.46971 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.47490 * 59.99995 * 20 19 18 22 22 C 1.53003 * 109.46709 * 300.00202 * 21 20 19 23 23 C 1.52991 * 109.47204 * 150.00044 * 18 17 16 24 24 C 1.53005 * 109.46829 * 175.00341 * 11 10 9 25 25 C 1.54268 * 110.03346 * 297.06573 * 24 11 10 26 26 C 1.54966 * 104.15892 * 217.14065 * 25 24 11 27 27 C 1.54884 * 102.77946 * 37.89001 * 26 25 24 28 28 C 1.53879 * 110.02912 * 179.84931 * 24 11 10 29 29 H 0.97001 * 119.99339 * 0.02562 * 1 2 3 30 30 H 0.96989 * 120.00233 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.47273 * 60.00449 * 10 9 7 32 32 H 1.09002 * 109.47457 * 300.00020 * 10 9 7 33 33 H 0.96994 * 120.00384 * 64.80179 * 13 11 10 34 34 H 1.08993 * 109.46904 * 300.27448 * 16 14 13 35 35 H 1.08994 * 109.47106 * 60.27481 * 16 14 13 36 36 H 1.09000 * 109.47482 * 29.99687 * 18 17 16 37 37 H 1.09000 * 109.46887 * 300.00134 * 19 18 17 38 38 H 1.09004 * 109.47258 * 60.00097 * 19 18 17 39 39 H 1.09000 * 109.47311 * 299.99736 * 20 19 18 40 40 H 1.09000 * 109.46896 * 180.02562 * 20 19 18 41 41 H 1.08996 * 109.47715 * 179.97438 * 21 20 19 42 42 H 1.09000 * 109.47055 * 59.99584 * 21 20 19 43 43 H 1.08995 * 109.47292 * 299.99475 * 22 21 20 44 44 H 1.09005 * 109.46489 * 179.97438 * 22 21 20 45 45 H 1.09000 * 109.47331 * 299.99760 * 23 18 17 46 46 H 1.09008 * 109.47528 * 60.00036 * 23 18 17 47 47 H 1.08994 * 110.02045 * 58.46024 * 24 11 10 48 48 H 1.09009 * 110.48252 * 335.78575 * 25 24 11 49 49 H 1.09000 * 110.48723 * 98.42696 * 25 24 11 50 50 H 1.08995 * 110.72014 * 279.57350 * 26 25 24 51 51 H 1.08998 * 110.91912 * 156.29475 * 26 25 24 52 52 H 1.08999 * 110.48894 * 203.40840 * 27 26 25 53 53 H 1.08997 * 110.60635 * 80.81241 * 27 26 25 54 54 H 1.08994 * 110.03117 * 238.56492 * 28 24 11 55 55 H 1.08998 * 110.02960 * 359.95182 * 28 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0101 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3253 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0017 11 6 1.0635 -4.8197 -0.0008 12 1 0.4983 -4.8138 0.9313 13 7 0.1428 -4.6758 -1.1312 14 6 -1.1697 -4.4653 -0.9087 15 8 -1.6035 -4.4846 0.2239 16 6 -2.0972 -4.1998 -2.0664 17 8 -3.4255 -4.0036 -1.5773 18 6 -4.3890 -3.7439 -2.6002 19 6 -4.4794 -2.2362 -2.8445 20 6 -5.5115 -1.9580 -3.9392 21 6 -6.8780 -2.4859 -3.4980 22 6 -6.7875 -3.9936 -3.2536 23 6 -5.7556 -4.2719 -2.1595 24 6 1.8241 -6.1412 -0.1276 25 6 2.5704 -6.1941 -1.4767 26 6 2.4497 -7.6744 -1.9190 27 6 1.0150 -8.0495 -1.4721 28 6 0.8358 -7.3207 -0.1242 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 2.6851 -3.7151 0.8879 32 1 2.6838 -3.7143 -0.8922 33 1 0.4777 -4.7320 -2.0397 34 1 -1.7695 -3.3058 -2.5967 35 1 -2.0825 -5.0515 -2.7464 36 1 -4.0859 -4.2435 -3.5203 37 1 -4.7826 -1.7366 -1.9244 38 1 -3.5058 -1.8599 -3.1585 39 1 -5.2088 -2.4576 -4.8594 40 1 -5.5756 -0.8839 -4.1136 41 1 -7.6134 -2.2874 -4.2776 42 1 -7.1807 -1.9863 -2.5778 43 1 -6.4848 -4.4933 -4.1738 44 1 -7.7610 -4.3697 -2.9388 45 1 -5.6912 -5.3460 -1.9854 46 1 -6.0589 -3.7723 -1.2394 47 1 2.5318 -6.2448 0.6948 48 1 2.0909 -5.5385 -2.2038 49 1 3.6167 -5.9185 -1.3450 50 1 3.1877 -8.2913 -1.4065 51 1 2.5543 -7.7674 -2.9999 52 1 0.9270 -9.1276 -1.3373 53 1 0.2824 -7.6956 -2.1974 54 1 1.0645 -7.9970 0.6993 55 1 -0.1856 -6.9516 -0.0314 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754650692.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:57 Heat of formation + Delta-G solvation = -125.122104 kcal Electronic energy + Delta-G solvation = -31157.780198 eV Core-core repulsion = 27192.536811 eV Total energy + Delta-G solvation = -3965.243387 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.29085 -40.13281 -39.04738 -37.23639 -36.72033 -35.10443 -33.14055 -31.75321 -31.50124 -30.73735 -29.58115 -28.41599 -27.65375 -25.09669 -23.55671 -23.18749 -22.90790 -22.13845 -21.09974 -20.73763 -20.36696 -19.18620 -18.38215 -17.79433 -17.07754 -17.04122 -16.67284 -16.43555 -16.18623 -15.81990 -15.38954 -15.24418 -15.08863 -15.01245 -14.84232 -14.60375 -14.14375 -14.08848 -13.80848 -13.74610 -13.51771 -13.17797 -13.12246 -13.04423 -12.98887 -12.76030 -12.18427 -12.07826 -12.00320 -11.99026 -11.89532 -11.83177 -11.65998 -11.55183 -11.50082 -11.46759 -11.43016 -11.34546 -11.25643 -10.98637 -10.72928 -10.42535 -9.94061 -8.99908 -7.93322 -5.23801 1.44244 1.46960 1.55432 1.63676 1.94032 2.54629 2.98455 3.39272 3.56547 3.70786 3.74374 3.78037 3.83862 3.86958 4.05748 4.12057 4.17558 4.21208 4.26246 4.27792 4.34311 4.36236 4.40844 4.55068 4.57040 4.58734 4.62836 4.66527 4.70961 4.79905 4.88648 4.90143 4.92243 4.94216 5.03483 5.08611 5.11308 5.15854 5.19297 5.22511 5.23003 5.29798 5.32557 5.38455 5.40138 5.45931 5.50361 5.50712 5.56118 5.65151 6.18610 6.25752 6.62960 7.31717 7.34726 8.09632 8.32292 9.29307 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006531 B = 0.004239 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4286.434057 B = 6604.341878 C =10256.876897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.974 3.026 4 H -0.283 1.283 5 H -0.300 1.300 6 H -0.268 1.268 7 C -0.245 4.245 8 H 0.079 0.921 9 N -0.744 5.744 10 C 0.140 3.860 11 C 0.150 3.850 12 H 0.062 0.938 13 N -0.694 5.694 14 C 0.512 3.488 15 O -0.575 6.575 16 C 0.050 3.950 17 O -0.390 6.390 18 C 0.087 3.913 19 C -0.145 4.145 20 C -0.111 4.111 21 C -0.123 4.123 22 C -0.108 4.108 23 C -0.115 4.115 24 C -0.091 4.091 25 C -0.117 4.117 26 C -0.115 4.115 27 C -0.117 4.117 28 C -0.116 4.116 29 H 0.248 0.752 30 H 0.371 0.629 31 H 0.025 0.975 32 H 0.043 0.957 33 H 0.410 0.590 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.051 0.949 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.050 0.950 47 H 0.087 0.913 48 H 0.064 0.936 49 H 0.073 0.927 50 H 0.073 0.927 51 H 0.078 0.922 52 H 0.072 0.928 53 H 0.063 0.937 54 H 0.066 0.934 55 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.575 -16.835 -13.094 22.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.269 4.269 3 Si 0.803 3.197 4 H -0.210 1.210 5 H -0.227 1.227 6 H -0.193 1.193 7 C -0.377 4.377 8 H 0.097 0.903 9 N -0.387 5.387 10 C 0.013 3.987 11 C 0.045 3.955 12 H 0.080 0.920 13 N -0.347 5.347 14 C 0.299 3.701 15 O -0.454 6.454 16 C -0.029 4.029 17 O -0.309 6.309 18 C 0.030 3.970 19 C -0.183 4.183 20 C -0.148 4.148 21 C -0.160 4.160 22 C -0.145 4.145 23 C -0.153 4.153 24 C -0.110 4.110 25 C -0.155 4.155 26 C -0.152 4.152 27 C -0.154 4.154 28 C -0.154 4.154 29 H 0.057 0.943 30 H 0.203 0.797 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.247 0.753 34 H 0.098 0.902 35 H 0.133 0.867 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.069 0.931 47 H 0.106 0.894 48 H 0.082 0.918 49 H 0.091 0.909 50 H 0.092 0.908 51 H 0.097 0.903 52 H 0.091 0.909 53 H 0.081 0.919 54 H 0.085 0.915 55 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.768 -16.746 -12.076 21.437 hybrid contribution 0.248 1.603 0.160 1.629 sum -5.520 -15.143 -11.917 20.045 Atomic orbital electron populations 1.69895 1.06791 1.25784 1.59432 1.25609 0.96266 1.01207 1.03779 0.85128 0.77609 0.79384 0.77547 1.20992 1.22702 1.19319 1.19661 0.91517 0.85268 1.41208 0.90319 1.42553 1.05612 1.01153 1.89333 1.21253 0.93791 0.84823 0.98808 1.21111 0.89945 0.94758 0.89725 0.91960 1.45542 1.06064 1.72686 1.10432 1.20741 0.83568 0.75358 0.90395 1.90684 1.77024 1.51824 1.25885 1.22273 0.83413 1.03113 0.94121 1.88035 1.16151 1.92151 1.34547 1.22381 0.89072 0.94873 0.90718 1.22059 0.99905 0.96700 0.99673 1.21478 0.94396 1.01443 0.97509 1.21601 0.96851 0.95920 1.01635 1.21479 0.98492 0.96281 0.98246 1.21600 0.92900 1.01236 0.99576 1.22047 0.96921 0.91969 1.00104 1.22440 1.00238 0.97671 0.95127 1.22467 0.96400 0.94998 1.01354 1.22310 0.97457 0.99978 0.95700 1.22114 0.98089 0.96233 0.98988 0.94320 0.79678 0.95709 0.93951 0.75280 0.90191 0.86668 0.89750 0.93749 0.93065 0.90279 0.91677 0.89837 0.92963 0.90218 0.90135 0.90986 0.93125 0.89425 0.91761 0.90854 0.90824 0.90330 0.90903 0.91855 0.91495 0.94097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.44 13.06 21.65 0.28 -62.15 16 2 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 3 Si 0.97 47.44 29.55 68.60 2.03 49.47 16 4 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 5 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.24 -14.05 9.99 84.03 0.84 -13.21 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 9 N -0.74 -39.52 5.43 -343.43 -1.87 -41.38 16 10 C 0.14 5.64 5.84 86.38 0.50 6.15 16 11 C 0.15 5.11 2.04 45.00 0.09 5.21 16 12 H 0.06 2.63 6.91 -2.39 -0.02 2.61 16 13 N -0.69 -22.14 3.75 -442.51 -1.66 -23.80 16 14 C 0.51 19.49 7.01 87.66 0.61 20.11 16 15 O -0.58 -28.13 15.84 15.98 0.25 -27.87 16 16 C 0.05 1.54 6.23 71.24 0.44 1.98 16 17 O -0.39 -13.69 9.52 -129.94 -1.24 -14.93 16 18 C 0.09 2.23 2.61 30.59 0.08 2.31 16 19 C -0.15 -3.96 5.54 30.60 0.17 -3.79 16 20 C -0.11 -2.15 5.92 30.59 0.18 -1.97 16 21 C -0.12 -2.05 5.92 30.60 0.18 -1.87 16 22 C -0.11 -1.68 5.92 30.58 0.18 -1.50 16 23 C -0.12 -2.59 5.57 30.57 0.17 -2.42 16 24 C -0.09 -2.22 2.81 -10.07 -0.03 -2.25 16 25 C -0.12 -2.29 5.13 31.70 0.16 -2.13 16 26 C -0.11 -1.75 6.91 31.91 0.22 -1.53 16 27 C -0.12 -2.01 6.83 31.67 0.22 -1.80 16 28 C -0.12 -2.67 6.19 31.32 0.19 -2.48 16 29 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 30 H 0.37 21.88 6.80 -92.72 -0.63 21.25 16 31 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.04 1.56 7.13 -2.39 -0.02 1.55 16 33 H 0.41 10.50 6.96 -92.71 -0.65 9.86 16 34 H 0.08 2.46 7.87 -2.39 -0.02 2.44 16 35 H 0.12 2.39 8.08 -2.39 -0.02 2.37 16 36 H 0.08 1.68 7.79 -2.39 -0.02 1.67 16 37 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.52 7.87 -2.38 -0.02 1.51 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 45 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 47 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.06 1.29 5.96 -2.38 -0.01 1.28 16 49 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 53 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 54 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 55 H 0.04 1.17 7.12 -2.39 -0.02 1.16 16 Total: -1.00 -78.98 421.50 2.07 -76.91 By element: Atomic # 1 Polarization: 47.45 SS G_CDS: -0.42 Total: 47.03 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 4.69 Total: -3.27 kcal Atomic # 7 Polarization: -124.09 SS G_CDS: -3.24 Total: -127.34 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -0.98 Total: -42.80 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -78.98 2.07 -76.91 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754650692.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.216 kcal (2) G-P(sol) polarization free energy of solvation -78.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds