Wall clock time and date at job start Tue Mar 31 2020 22:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42893 * 114.00240 * 2 1 4 4 C 1.53003 * 109.47304 * 184.99269 * 3 2 1 5 5 C 1.53004 * 109.47129 * 175.08383 * 4 3 2 6 6 C 1.50703 * 110.43261 * 304.81856 * 5 4 3 7 7 O 1.21278 * 120.00261 * 123.22002 * 6 5 4 8 8 N 1.34784 * 119.99662 * 303.20915 * 6 5 4 9 9 C 1.48303 * 127.77217 * 355.36630 * 8 6 5 10 10 C 1.54387 * 104.53990 * 219.51456 * 9 8 6 11 11 C 1.54292 * 105.04921 * 336.25515 * 10 9 8 12 12 C 1.52997 * 110.34232 * 118.81782 * 11 10 9 13 13 C 1.53001 * 110.34351 * 241.07725 * 11 10 9 14 14 N 1.46491 * 109.47066 * 298.54614 * 13 11 10 15 15 C 1.36937 * 119.99957 * 180.02562 * 14 13 11 16 16 H 1.08006 * 120.00073 * 359.97438 * 15 14 13 17 17 C 1.38809 * 120.00222 * 180.02562 * 15 14 13 18 18 N 1.31614 * 120.00230 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 120.00131 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46856 * 90.00182 * 19 17 15 21 21 H 1.48502 * 109.46999 * 210.00230 * 19 17 15 22 22 H 1.48495 * 109.47037 * 330.00370 * 19 17 15 23 23 C 1.48147 * 127.83338 * 175.42846 * 8 6 5 24 24 C 1.54887 * 110.59893 * 67.43146 * 5 4 3 25 25 C 1.54898 * 102.74675 * 156.67537 * 24 5 4 26 26 C 1.54273 * 104.19284 * 322.05951 * 25 24 5 27 27 C 1.53868 * 106.59984 * 23.61036 * 26 25 24 28 28 H 1.09001 * 109.47299 * 184.99431 * 1 2 3 29 29 H 1.09003 * 109.47209 * 304.99136 * 1 2 3 30 30 H 1.09001 * 109.47303 * 64.98812 * 1 2 3 31 31 H 1.08998 * 109.47253 * 64.98906 * 3 2 1 32 32 H 1.09004 * 109.47240 * 304.99578 * 3 2 1 33 33 H 1.08993 * 109.47187 * 55.08046 * 4 3 2 34 34 H 1.09002 * 109.46465 * 295.08052 * 4 3 2 35 35 H 1.09003 * 110.38586 * 100.78502 * 9 8 6 36 36 H 1.09003 * 110.50895 * 338.30124 * 9 8 6 37 37 H 1.09003 * 110.34112 * 217.33919 * 10 9 8 38 38 H 1.09000 * 110.34785 * 95.17723 * 10 9 8 39 39 H 1.09003 * 109.46834 * 61.45699 * 12 11 10 40 40 H 1.09001 * 109.47599 * 181.45605 * 12 11 10 41 41 H 1.09007 * 109.47161 * 301.45727 * 12 11 10 42 42 H 1.09002 * 109.46790 * 58.55217 * 13 11 10 43 43 H 1.08997 * 109.46760 * 178.54392 * 13 11 10 44 44 H 0.97000 * 120.00328 * 359.97438 * 14 13 11 45 45 H 0.96997 * 120.00505 * 180.02562 * 18 17 15 46 46 H 1.08997 * 110.41241 * 21.63512 * 23 8 6 47 47 H 1.09004 * 110.50525 * 259.25677 * 23 8 6 48 48 H 1.08995 * 110.76031 * 274.99210 * 24 5 4 49 49 H 1.08998 * 110.75557 * 38.36449 * 24 5 4 50 50 H 1.08996 * 110.48610 * 203.38261 * 25 24 5 51 51 H 1.09002 * 110.48245 * 80.73907 * 25 24 5 52 52 H 1.08999 * 110.02829 * 264.32257 * 26 25 24 53 53 H 1.09000 * 110.06457 * 142.91525 * 26 25 24 54 54 H 1.09000 * 110.03509 * 240.71430 * 27 26 25 55 55 H 1.09006 * 110.07522 * 119.30344 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5305 1.1868 -0.1255 5 6 4.1426 2.5836 -0.2488 6 6 3.5175 3.3324 -1.3976 7 8 2.9856 4.4050 -1.2046 8 7 3.5499 2.8100 -2.6397 9 6 4.2299 1.5700 -3.0862 10 6 4.8195 1.9272 -4.4676 11 6 3.9547 3.0968 -4.9821 12 6 4.8167 4.3432 -5.1925 13 6 3.2539 2.7072 -6.2851 14 7 4.2580 2.4070 -7.3087 15 6 3.8637 2.0327 -8.5655 16 1 2.8125 1.9585 -8.8021 17 6 4.8151 1.7477 -9.5353 18 7 6.0961 1.8377 -9.2470 19 14 4.2773 1.2366 -11.2497 20 1 4.1303 2.4432 -12.1028 21 1 5.2981 0.3341 -11.8403 22 1 2.9758 0.5260 -11.1689 23 6 2.9159 3.3448 -3.8672 24 6 3.9681 3.3736 1.0720 25 6 5.1050 4.4228 0.9954 26 6 6.2831 3.6581 0.3571 27 6 5.6712 2.4888 -0.4340 28 1 -0.3634 -1.0238 0.0895 29 1 -0.3634 0.5893 0.8419 30 1 -0.3634 0.4345 -0.9313 31 1 1.7611 1.8140 0.9313 32 1 1.6196 1.8771 -0.8419 33 1 3.7774 0.6024 -1.0118 34 1 3.9305 0.6916 0.7593 35 1 3.5116 0.7553 -3.1787 36 1 5.0254 1.2995 -2.3919 37 1 4.7449 1.0751 -5.1433 38 1 5.8588 2.2401 -4.3667 39 1 5.5786 4.1354 -5.9437 40 1 4.1881 5.1669 -5.5308 41 1 5.2976 4.6153 -4.2528 42 1 2.6339 1.8270 -6.1150 43 1 2.6275 3.5332 -6.6218 44 1 5.2021 2.4740 -7.0964 45 1 6.7610 1.6389 -9.9248 46 1 2.7204 4.4117 -3.7603 47 1 1.9912 2.8097 -4.0835 48 1 2.9939 3.8613 1.1046 49 1 4.1031 2.7199 1.9337 50 1 5.3716 4.7699 1.9937 51 1 4.8084 5.2614 0.3654 52 1 6.9456 3.2770 1.1343 53 1 6.8352 4.3152 -0.3148 54 1 6.0367 1.5402 -0.0409 55 1 5.9256 2.5779 -1.4902 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754713009.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:09 Heat of formation + Delta-G solvation = -101.090755 kcal Electronic energy + Delta-G solvation = -31860.284280 eV Core-core repulsion = 27896.082971 eV Total energy + Delta-G solvation = -3964.201310 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.98677 -39.96808 -38.78007 -37.90520 -36.48675 -34.50645 -33.43493 -31.97870 -30.67459 -29.80882 -28.98191 -27.86787 -27.19014 -26.70203 -24.79803 -24.19058 -23.56826 -22.34599 -21.34060 -20.24076 -19.50994 -19.09127 -17.71911 -17.48539 -17.15542 -17.05258 -16.72561 -16.50453 -16.06895 -15.77011 -15.53748 -15.35667 -15.13157 -15.07053 -14.74065 -14.44871 -14.34353 -14.14417 -13.80247 -13.72584 -13.48222 -13.22719 -13.02043 -12.85244 -12.80637 -12.64433 -12.48629 -12.43073 -12.21472 -12.14417 -12.08073 -12.03470 -11.94098 -11.77797 -11.73104 -11.56040 -11.47523 -11.38654 -11.26239 -10.91471 -10.70434 -10.61782 -9.74087 -8.95601 -7.92628 -5.20040 1.48862 1.49740 1.58013 1.58949 1.90603 2.57740 2.70084 3.29681 3.41092 3.45614 3.60153 3.64973 3.68418 3.82473 4.02302 4.04268 4.16374 4.19370 4.27703 4.33810 4.35725 4.36162 4.41966 4.45399 4.50180 4.51351 4.53302 4.60287 4.67557 4.70562 4.73301 4.79464 4.81999 4.83710 4.92540 4.93897 4.97619 5.02167 5.02944 5.06515 5.07495 5.12948 5.15314 5.27059 5.31705 5.37932 5.38838 5.44001 5.50550 5.52650 6.14579 6.29766 6.56932 7.12231 7.37364 8.12801 8.37797 9.30683 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014213 B = 0.002885 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.496882 B = 9703.505057 C =10757.198465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.062 3.938 4 C -0.104 4.104 5 C -0.070 4.070 6 C 0.544 3.456 7 O -0.579 6.579 8 N -0.615 5.615 9 C 0.103 3.897 10 C -0.120 4.120 11 C -0.070 4.070 12 C -0.120 4.120 13 C 0.168 3.832 14 N -0.736 5.736 15 C -0.243 4.243 16 H 0.073 0.927 17 C -0.072 4.072 18 N -0.966 5.966 19 Si 0.969 3.031 20 H -0.290 1.290 21 H -0.295 1.295 22 H -0.271 1.271 23 C 0.121 3.879 24 C -0.099 4.099 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.115 4.115 28 H 0.102 0.898 29 H 0.050 0.950 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.027 0.973 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.026 0.974 43 H 0.015 0.985 44 H 0.378 0.622 45 H 0.251 0.749 46 H 0.070 0.930 47 H 0.077 0.923 48 H 0.059 0.941 49 H 0.101 0.899 50 H 0.082 0.918 51 H 0.042 0.958 52 H 0.088 0.912 53 H 0.054 0.946 54 H 0.105 0.895 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.025 -1.946 25.730 26.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C -0.015 4.015 4 C -0.141 4.141 5 C -0.073 4.073 6 C 0.335 3.665 7 O -0.459 6.459 8 N -0.347 5.347 9 C -0.019 4.019 10 C -0.158 4.158 11 C -0.071 4.071 12 C -0.178 4.178 13 C 0.041 3.959 14 N -0.380 5.380 15 C -0.375 4.375 16 H 0.091 0.909 17 C -0.264 4.264 18 N -0.617 5.617 19 Si 0.799 3.201 20 H -0.218 1.218 21 H -0.222 1.222 22 H -0.195 1.195 23 C -0.003 4.003 24 C -0.137 4.137 25 C -0.163 4.163 26 C -0.160 4.160 27 C -0.153 4.153 28 H 0.120 0.880 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.102 0.898 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.043 0.957 43 H 0.033 0.967 44 H 0.211 0.789 45 H 0.059 0.941 46 H 0.089 0.911 47 H 0.096 0.904 48 H 0.077 0.923 49 H 0.119 0.881 50 H 0.100 0.900 51 H 0.061 0.939 52 H 0.107 0.893 53 H 0.072 0.928 54 H 0.123 0.877 55 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.336 -1.550 25.814 26.222 hybrid contribution -0.232 0.408 -1.655 1.720 sum -4.569 -1.142 24.159 24.614 Atomic orbital electron populations 1.22903 0.79857 1.03915 1.00365 1.87811 1.21087 1.28096 1.95511 1.22558 0.94633 0.84392 0.99889 1.21682 0.92664 0.94314 1.05454 1.21586 0.97191 0.95187 0.93383 1.20576 0.78499 0.84826 0.82610 1.90657 1.47814 1.23385 1.84085 1.49007 1.52468 1.26111 1.07157 1.22748 0.97482 0.86340 0.95333 1.22555 0.99251 0.98026 0.95983 1.21493 0.95676 0.96145 0.93832 1.21663 0.99223 0.96297 1.00603 1.20742 0.91227 0.96622 0.87286 1.42482 1.04994 1.82055 1.08437 1.19600 0.92477 1.36407 0.89006 0.90928 1.25469 0.95371 1.03684 1.01877 1.69793 0.99996 1.57402 1.34539 0.85206 0.77153 0.77394 0.80393 1.21770 1.22187 1.19545 1.22245 0.95360 0.99896 0.82782 1.22482 0.99169 0.97136 0.94903 1.22340 0.95096 0.97711 1.01122 1.22143 0.97788 0.96464 0.99609 1.22377 0.90489 1.01208 1.01213 0.88011 0.93120 0.94429 0.92439 0.95474 0.89807 0.87644 0.90009 0.87512 0.90763 0.90927 0.93564 0.93229 0.92615 0.95653 0.96675 0.78910 0.94054 0.91101 0.90442 0.92262 0.88088 0.89958 0.93930 0.89318 0.92753 0.87697 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -8.27 10.70 -148.98 -1.59 -9.86 16 3 C 0.06 1.19 5.52 71.98 0.40 1.59 16 4 C -0.10 -1.64 4.27 30.60 0.13 -1.51 16 5 C -0.07 -1.27 0.27 -51.85 -0.01 -1.28 16 6 C 0.54 14.10 4.90 87.66 0.43 14.53 16 7 O -0.58 -19.27 15.29 -3.02 -0.05 -19.32 16 8 N -0.62 -15.47 3.26 -807.53 -2.63 -18.10 16 9 C 0.10 2.24 4.80 86.50 0.42 2.66 16 10 C -0.12 -3.37 5.78 31.50 0.18 -3.19 16 11 C -0.07 -2.20 0.73 -51.27 -0.04 -2.23 16 12 C -0.12 -3.95 8.06 71.98 0.58 -3.37 16 13 C 0.17 6.52 4.91 86.38 0.42 6.95 16 14 N -0.74 -36.08 4.93 -343.47 -1.69 -37.77 16 15 C -0.24 -13.34 9.99 84.03 0.84 -12.50 16 16 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 17 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 18 N -0.97 -58.03 13.06 21.65 0.28 -57.74 16 19 Si 0.97 45.74 29.55 68.60 2.03 47.77 16 20 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 21 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 23 C 0.12 3.41 6.16 86.53 0.53 3.94 16 24 C -0.10 -1.68 4.79 31.89 0.15 -1.53 16 25 C -0.13 -2.19 6.52 31.67 0.21 -1.98 16 26 C -0.12 -1.85 6.80 31.32 0.21 -1.63 16 27 C -0.12 -1.74 4.88 31.32 0.15 -1.59 16 28 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 1.01 7.68 -2.39 -0.02 1.00 16 32 H 0.03 0.63 6.94 -2.39 -0.02 0.62 16 33 H 0.08 1.34 5.49 -2.39 -0.01 1.32 16 34 H 0.11 1.25 8.08 -2.39 -0.02 1.23 16 35 H 0.08 1.70 7.99 -2.39 -0.02 1.68 16 36 H 0.11 1.83 4.69 -2.39 -0.01 1.82 16 37 H 0.07 2.42 7.49 -2.39 -0.02 2.40 16 38 H 0.07 2.02 7.71 -2.39 -0.02 2.00 16 39 H 0.05 1.73 7.01 -2.39 -0.02 1.71 16 40 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.03 0.98 8.12 -2.39 -0.02 0.96 16 43 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.38 19.52 6.28 -92.71 -0.58 18.94 16 45 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 46 H 0.07 2.17 7.57 -2.39 -0.02 2.15 16 47 H 0.08 2.09 7.85 -2.39 -0.02 2.07 16 48 H 0.06 1.24 7.44 -2.39 -0.02 1.22 16 49 H 0.10 1.18 8.02 -2.39 -0.02 1.16 16 50 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 51 H 0.04 1.00 7.58 -2.39 -0.02 0.98 16 52 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 53 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 54 H 0.10 1.06 7.84 -2.39 -0.02 1.05 16 55 H 0.06 1.14 6.04 -2.38 -0.01 1.12 16 Total: -1.00 -68.27 412.21 2.94 -65.32 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: 0.28 Total: 32.80 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 6.32 Total: -3.09 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -4.04 Total: -113.62 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -1.64 Total: -29.18 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -68.27 2.94 -65.32 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754713009.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.766 kcal (2) G-P(sol) polarization free energy of solvation -68.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds