Wall clock time and date at job start Tue Mar 31 2020 21:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 113.99730 * 2 1 4 4 C 1.53001 * 109.47408 * 269.99945 * 3 2 1 5 5 C 1.53006 * 109.47206 * 300.00247 * 4 3 2 6 6 C 1.52998 * 109.47173 * 300.00057 * 5 4 3 7 7 C 1.50696 * 109.47438 * 179.97438 * 6 5 4 8 8 O 1.21277 * 120.00337 * 239.99544 * 7 6 5 9 9 N 1.34785 * 119.99670 * 60.00228 * 7 6 5 10 10 C 1.46499 * 119.99903 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47142 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.50093 * 300.00319 * 11 10 9 13 13 C 1.53041 * 109.50069 * 179.97438 * 11 10 9 14 14 C 1.53041 * 109.53784 * 178.68429 * 13 11 10 15 15 C 1.53187 * 109.31332 * 61.36469 * 14 13 11 16 16 N 1.46923 * 108.78079 * 305.36676 * 15 14 13 17 17 C 1.36939 * 120.62984 * 233.61446 * 16 15 14 18 18 H 1.08000 * 119.99630 * 152.79947 * 17 16 15 19 19 C 1.38809 * 119.99644 * 332.79142 * 17 16 15 20 20 N 1.31621 * 119.99466 * 159.75615 * 19 17 16 21 21 Si 1.86794 * 120.00368 * 339.75025 * 19 17 16 22 22 H 1.48504 * 109.47030 * 94.90026 * 21 19 17 23 23 H 1.48499 * 109.47539 * 214.89616 * 21 19 17 24 24 H 1.48503 * 109.47112 * 334.90095 * 21 19 17 25 25 C 1.46938 * 118.76669 * 53.58365 * 16 15 14 26 26 C 1.53004 * 109.47533 * 59.99582 * 6 5 4 27 27 C 1.53001 * 109.47061 * 150.00078 * 3 2 1 28 28 H 1.09009 * 109.47183 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47437 * 60.00128 * 1 2 3 30 30 H 1.08996 * 109.47439 * 299.99540 * 1 2 3 31 31 H 1.08997 * 109.47064 * 30.00150 * 3 2 1 32 32 H 1.08998 * 109.47084 * 59.99654 * 4 3 2 33 33 H 1.08994 * 109.47328 * 180.02562 * 4 3 2 34 34 H 1.08989 * 109.47218 * 179.97438 * 5 4 3 35 35 H 1.09003 * 109.46701 * 59.99401 * 5 4 3 36 36 H 1.09004 * 109.47059 * 300.00026 * 6 5 4 37 37 H 0.96998 * 119.99695 * 359.97438 * 9 7 6 38 38 H 1.08999 * 109.47347 * 299.99698 * 10 9 7 39 39 H 1.09004 * 109.47333 * 59.99867 * 10 9 7 40 40 H 1.09000 * 109.47368 * 59.99328 * 12 11 10 41 41 H 1.08996 * 109.47606 * 179.97438 * 12 11 10 42 42 H 1.09005 * 109.46548 * 299.99937 * 12 11 10 43 43 H 1.08990 * 109.45763 * 298.70769 * 13 11 10 44 44 H 1.09004 * 109.45570 * 58.67902 * 13 11 10 45 45 H 1.09000 * 109.49652 * 181.31778 * 14 13 11 46 46 H 1.08996 * 109.49756 * 301.41025 * 14 13 11 47 47 H 1.09004 * 109.58946 * 65.15104 * 15 14 13 48 48 H 1.08998 * 109.58791 * 185.56988 * 15 14 13 49 49 H 0.97006 * 119.99535 * 180.02562 * 20 19 17 50 50 H 1.08993 * 109.61404 * 186.65151 * 25 16 15 51 51 H 1.08997 * 109.56017 * 66.21770 * 25 16 15 52 52 H 1.08999 * 109.47423 * 179.97438 * 26 6 5 53 53 H 1.09004 * 109.46585 * 60.00154 * 26 6 5 54 54 H 1.08994 * 109.47626 * 179.97438 * 27 3 2 55 55 H 1.09000 * 109.47402 * 300.00387 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 2.2176 1.7715 -1.4425 5 6 3.1514 0.7975 -2.1638 6 6 4.5001 0.7552 -1.4426 7 6 5.4197 -0.2045 -2.1526 8 8 5.8653 -1.1660 -1.5629 9 7 5.7470 0.0058 -3.4431 10 6 6.6406 -0.9275 -4.1335 11 6 6.8477 -0.4624 -5.5763 12 6 5.4992 -0.4196 -6.2978 13 6 7.7816 -1.4366 -6.2980 14 6 7.9633 -0.9903 -7.7506 15 6 8.6027 0.4016 -7.7767 16 7 7.7861 1.3126 -6.9632 17 6 7.3240 2.4907 -7.4864 18 1 6.4162 2.9326 -7.1028 19 6 8.0223 3.1169 -8.5096 20 7 7.4157 3.9968 -9.2779 21 14 9.8230 2.7110 -8.7962 22 1 9.9336 1.6605 -9.8399 23 1 10.5403 3.9315 -9.2445 24 1 10.4266 2.2183 -7.5320 25 6 7.4738 0.9359 -5.5777 26 6 4.2927 0.2893 0.0000 27 6 3.3588 1.2633 0.7212 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 0.5137 0.8900 31 1 1.3448 1.9993 0.5138 32 1 1.2568 1.8015 -1.9563 33 1 2.6613 2.7670 -1.4425 34 1 3.2988 1.1292 -3.1915 35 1 2.7081 -0.1983 -2.1637 36 1 4.9434 1.7510 -1.4425 37 1 5.3904 0.7746 -3.9147 38 1 7.6014 -0.9581 -3.6198 39 1 6.1966 -1.9231 -4.1333 40 1 4.8342 0.2748 -5.7843 41 1 5.6472 -0.0878 -7.3254 42 1 5.0553 -1.4152 -6.2974 43 1 8.7500 -1.4490 -5.7981 44 1 7.3492 -2.4370 -6.2771 45 1 8.6098 -1.6974 -8.2703 46 1 6.9922 -0.9538 -8.2442 47 1 9.6107 0.3485 -7.3652 48 1 8.6438 0.7656 -8.8033 49 1 7.9036 4.4341 -9.9932 50 1 6.7698 1.6519 -5.1537 51 1 8.3896 0.9268 -4.9867 52 1 5.2536 0.2588 0.5137 53 1 3.8494 -0.7065 -0.0001 54 1 3.8024 2.2589 0.7209 55 1 3.2111 0.9313 1.7489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754729031.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:57 Heat of formation + Delta-G solvation = -104.153944 kcal Electronic energy + Delta-G solvation = -31393.020659 eV Core-core repulsion = 27428.686520 eV Total energy + Delta-G solvation = -3964.334140 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -41.42889 -40.36946 -39.48393 -36.81155 -36.47097 -34.79557 -33.11416 -32.46089 -31.65713 -31.27284 -28.10175 -27.61009 -27.25748 -26.88570 -24.39477 -23.67453 -23.52683 -22.62765 -21.31623 -20.52234 -19.52187 -18.72311 -18.12807 -17.22698 -17.21171 -17.03228 -16.77607 -16.28570 -16.21616 -15.67924 -15.53467 -15.43614 -15.15681 -15.02004 -14.62118 -14.48598 -14.19287 -14.14447 -13.95125 -13.65664 -13.45366 -13.38567 -13.26274 -13.09658 -13.05461 -12.86262 -12.57814 -12.37798 -12.33678 -12.09232 -12.02746 -11.96768 -11.65681 -11.64281 -11.46292 -11.41166 -11.31979 -11.20180 -11.11622 -10.65207 -10.59317 -10.33256 -10.01154 -8.87911 -8.13353 -5.43402 1.30437 1.42211 1.49997 1.69041 2.28369 2.43580 2.96967 3.08504 3.33330 3.64313 3.75599 3.81272 3.84239 3.87433 3.93925 4.14719 4.23416 4.25164 4.27302 4.37023 4.41132 4.42115 4.50682 4.58267 4.60852 4.61385 4.64210 4.67487 4.74835 4.79540 4.84294 4.86807 4.91125 4.93761 4.99057 5.04925 5.06490 5.10448 5.12246 5.16274 5.25036 5.27717 5.31270 5.32922 5.35356 5.38473 5.47855 5.56111 5.66585 5.90042 6.16180 6.39783 6.58259 6.94685 7.28337 7.66147 8.07464 9.06290 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016884 B = 0.002656 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.989772 B =10541.352605 C =11215.244514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.083 3.917 4 C -0.137 4.137 5 C -0.100 4.100 6 C -0.101 4.101 7 C 0.514 3.486 8 O -0.586 6.586 9 N -0.718 5.718 10 C 0.142 3.858 11 C -0.079 4.079 12 C -0.125 4.125 13 C -0.095 4.095 14 C -0.129 4.129 15 C 0.117 3.883 16 N -0.613 5.613 17 C -0.235 4.235 18 H 0.059 0.941 19 C -0.035 4.035 20 N -0.957 5.957 21 Si 0.941 3.059 22 H -0.280 1.280 23 H -0.316 1.316 24 H -0.263 1.263 25 C 0.160 3.840 26 C -0.089 4.089 27 C -0.112 4.112 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.114 0.886 37 H 0.408 0.592 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.050 0.950 41 H 0.048 0.952 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.028 0.972 48 H 0.045 0.955 49 H 0.259 0.741 50 H 0.058 0.942 51 H 0.024 0.976 52 H 0.057 0.943 53 H 0.051 0.949 54 H 0.095 0.905 55 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.236 -8.065 17.949 22.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C 0.026 3.974 4 C -0.175 4.175 5 C -0.138 4.138 6 C -0.122 4.122 7 C 0.302 3.698 8 O -0.466 6.466 9 N -0.370 5.370 10 C 0.017 3.983 11 C -0.081 4.081 12 C -0.182 4.182 13 C -0.133 4.133 14 C -0.168 4.168 15 C -0.008 4.008 16 N -0.337 5.337 17 C -0.364 4.364 18 H 0.077 0.923 19 C -0.230 4.230 20 N -0.604 5.604 21 Si 0.771 3.229 22 H -0.207 1.207 23 H -0.246 1.246 24 H -0.187 1.187 25 C 0.035 3.965 26 C -0.127 4.127 27 C -0.149 4.149 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.132 0.868 37 H 0.245 0.755 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.080 0.920 47 H 0.046 0.954 48 H 0.064 0.936 49 H 0.068 0.932 50 H 0.077 0.923 51 H 0.042 0.958 52 H 0.076 0.924 53 H 0.069 0.931 54 H 0.113 0.887 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.787 -8.807 18.246 22.953 hybrid contribution 0.674 0.769 -0.967 1.408 sum -10.113 -8.038 17.278 21.574 Atomic orbital electron populations 1.22898 0.80423 1.03182 1.00608 1.87943 1.20527 1.28752 1.95134 1.22274 0.95027 0.84515 0.95615 1.22034 1.00072 0.99560 0.95815 1.21350 0.92994 1.00614 0.98809 1.21384 0.95448 0.99184 0.96166 1.21166 0.80887 0.86080 0.81648 1.90652 1.56351 1.32575 1.67022 1.46119 1.49356 1.29581 1.11931 1.21246 0.93514 0.92692 0.90814 1.21146 0.96899 0.96630 0.93459 1.21693 0.94916 1.01085 1.00488 1.21387 0.99020 0.98209 0.94648 1.21955 1.01370 0.95892 0.97537 1.21407 0.93527 0.91309 0.94534 1.44391 1.61204 1.18662 1.09432 1.18851 1.03896 0.98369 1.15332 0.92302 1.25812 1.01173 0.97511 0.98462 1.69951 1.37156 1.32944 1.20341 0.85997 0.83315 0.75293 0.78265 1.20733 1.24572 1.18728 1.21062 0.97115 0.93986 0.84346 1.21151 0.99342 0.99341 0.92885 1.21683 0.93571 1.00581 0.99113 0.89571 0.93550 0.93021 0.90330 0.90917 0.89098 0.90996 0.92572 0.86781 0.75456 0.92263 0.91454 0.93134 0.93314 0.92044 0.91793 0.90093 0.90360 0.91975 0.95434 0.93647 0.93188 0.92309 0.95805 0.92405 0.93053 0.88659 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 113.37 1.23 1.54 16 2 O -0.40 -7.42 9.00 -148.98 -1.34 -8.76 16 3 C 0.08 1.18 2.92 30.59 0.09 1.26 16 4 C -0.14 -1.88 5.63 30.60 0.17 -1.71 16 5 C -0.10 -1.78 4.95 30.60 0.15 -1.63 16 6 C -0.10 -2.01 2.53 -11.54 -0.03 -2.04 16 7 C 0.51 13.68 7.15 87.65 0.63 14.30 16 8 O -0.59 -20.11 15.98 -3.02 -0.05 -20.16 16 9 N -0.72 -17.66 4.89 -463.06 -2.26 -19.92 16 10 C 0.14 3.68 4.57 86.38 0.39 4.08 16 11 C -0.08 -2.24 0.53 -52.10 -0.03 -2.26 16 12 C -0.12 -3.55 7.81 71.98 0.56 -2.99 16 13 C -0.09 -2.53 4.71 30.62 0.14 -2.39 16 14 C -0.13 -4.04 5.74 30.67 0.18 -3.87 16 15 C 0.12 4.77 4.19 86.36 0.36 5.13 16 16 N -0.61 -27.04 2.22 -699.08 -1.55 -28.59 16 17 C -0.23 -12.63 10.04 84.03 0.84 -11.78 16 18 H 0.06 3.41 8.05 -2.91 -0.02 3.39 16 19 C -0.04 -2.00 5.24 84.86 0.44 -1.56 16 20 N -0.96 -58.97 13.97 21.65 0.30 -58.67 16 21 Si 0.94 46.23 24.35 68.60 1.67 47.91 16 22 H -0.28 -13.16 6.70 99.48 0.67 -12.49 16 23 H -0.32 -15.99 7.11 99.48 0.71 -15.29 16 24 H -0.26 -12.40 6.45 99.48 0.64 -11.76 16 25 C 0.16 5.67 4.94 86.36 0.43 6.09 16 26 C -0.09 -1.84 4.35 30.60 0.13 -1.71 16 27 C -0.11 -1.63 5.66 30.60 0.17 -1.46 16 28 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.05 0.51 7.87 -2.39 -0.02 0.49 16 30 H 0.05 0.50 8.08 -2.39 -0.02 0.48 16 31 H 0.08 0.82 7.79 -2.39 -0.02 0.81 16 32 H 0.07 0.93 7.87 -2.39 -0.02 0.91 16 33 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.21 7.56 -2.39 -0.02 1.19 16 35 H 0.06 1.22 7.68 -2.39 -0.02 1.21 16 36 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.41 9.20 5.64 -92.71 -0.52 8.68 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.05 1.36 6.86 -2.39 -0.02 1.35 16 41 H 0.05 1.70 5.97 -2.39 -0.01 1.68 16 42 H 0.06 1.51 8.14 -2.38 -0.02 1.50 16 43 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.06 2.05 6.33 -2.39 -0.02 2.04 16 47 H 0.03 1.11 6.98 -2.38 -0.02 1.10 16 48 H 0.05 2.08 4.49 -2.39 -0.01 2.07 16 49 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 50 H 0.06 2.05 6.84 -2.39 -0.02 2.04 16 51 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 52 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 53 H 0.05 1.33 7.64 -2.38 -0.02 1.31 16 54 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 55 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -70.06 402.23 2.87 -67.19 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.23 Total: 21.98 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 5.87 Total: -0.98 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -3.51 Total: -107.18 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -1.39 Total: -28.92 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.67 Total: 47.91 kcal Total: -70.06 2.87 -67.19 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754729031.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.962 kcal (2) G-P(sol) polarization free energy of solvation -70.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds