Wall clock time and date at job start Tue Mar 31 2020 21:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.49826 * 2 1 4 4 N 1.46503 * 109.47429 * 299.93689 * 3 2 1 5 5 C 1.34775 * 120.00040 * 179.97438 * 4 3 2 6 6 O 1.21276 * 119.99974 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.99827 * 180.02562 * 5 4 3 8 8 C 1.53001 * 109.47216 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47167 * 179.97438 * 8 7 5 10 10 H 1.09004 * 109.47963 * 54.99624 * 9 8 7 11 11 C 1.53085 * 109.47998 * 175.02171 * 9 8 7 12 12 C 1.53178 * 109.16357 * 177.57662 * 11 9 8 13 13 C 1.53174 * 109.04904 * 303.03834 * 12 11 9 14 14 C 1.53099 * 109.16269 * 56.96931 * 13 12 11 15 15 O 1.42905 * 109.41399 * 302.39429 * 14 13 12 16 16 C 1.53039 * 109.52701 * 120.08050 * 2 1 3 17 17 C 1.53045 * 109.53270 * 58.60208 * 16 2 1 18 18 C 1.52757 * 109.38382 * 61.24270 * 17 16 2 19 19 N 1.46927 * 109.00981 * 305.58717 * 18 17 16 20 20 C 1.36937 * 120.62765 * 233.58852 * 19 18 17 21 21 H 1.07999 * 120.00411 * 28.52500 * 20 19 18 22 22 C 1.38816 * 119.99633 * 208.52864 * 20 19 18 23 23 N 1.31625 * 119.99868 * 199.07882 * 22 20 19 24 24 Si 1.86797 * 120.00193 * 19.07444 * 22 20 19 25 25 H 1.48504 * 109.47018 * 270.00605 * 24 22 20 26 26 H 1.48504 * 109.46847 * 29.99923 * 24 22 20 27 27 H 1.48495 * 109.47269 * 150.00286 * 24 22 20 28 28 C 1.46918 * 118.73800 * 53.30402 * 19 18 17 29 29 H 1.08996 * 109.47211 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47021 * 300.06711 * 1 2 3 31 31 H 1.09002 * 109.47029 * 60.06030 * 1 2 3 32 32 H 1.09000 * 109.47380 * 59.93861 * 3 2 1 33 33 H 1.08999 * 109.47622 * 179.97438 * 3 2 1 34 34 H 0.97005 * 119.99567 * 359.97438 * 4 3 2 35 35 H 1.09011 * 109.47169 * 299.99797 * 7 5 4 36 36 H 1.09001 * 109.47740 * 59.99262 * 7 5 4 37 37 H 1.08995 * 109.46985 * 299.99686 * 8 7 5 38 38 H 1.09003 * 109.47050 * 59.99979 * 8 7 5 39 39 H 1.08998 * 109.52502 * 297.49634 * 11 9 8 40 40 H 1.09003 * 109.52276 * 57.68604 * 11 9 8 41 41 H 1.09004 * 109.54452 * 183.16203 * 12 11 9 42 42 H 1.09002 * 109.60314 * 62.95126 * 12 11 9 43 43 H 1.09004 * 109.52344 * 297.06736 * 13 12 11 44 44 H 1.08994 * 109.52410 * 176.87613 * 13 12 11 45 45 H 1.08999 * 109.48135 * 182.40990 * 14 13 12 46 46 H 1.09003 * 109.48745 * 62.38487 * 14 13 12 47 47 H 1.08992 * 109.46205 * 178.61887 * 16 2 1 48 48 H 1.08997 * 109.46123 * 298.58772 * 16 2 1 49 49 H 1.09004 * 109.49234 * 181.31517 * 17 16 2 50 50 H 1.08998 * 109.49622 * 301.41162 * 17 16 2 51 51 H 1.08999 * 109.51179 * 185.70418 * 18 17 16 52 52 H 1.09000 * 109.43669 * 65.42169 * 18 17 16 53 53 H 0.96997 * 119.99774 * 355.08913 * 23 22 20 54 54 H 1.09005 * 109.58303 * 66.43841 * 28 19 18 55 55 H 1.09004 * 109.58949 * 186.85920 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 7 1.5540 2.1327 -1.1969 5 6 1.8800 3.4230 -1.4100 6 8 2.5759 4.0126 -0.6107 7 6 1.3788 4.1334 -2.6410 8 6 1.8885 5.5760 -2.6404 9 6 1.3802 6.2970 -3.8905 10 1 0.2939 6.2199 -3.9381 11 6 1.7852 7.7720 -3.8292 12 6 1.3258 8.4733 -5.1112 13 6 1.9323 7.7534 -6.3196 14 6 1.5214 6.2790 -6.2845 15 8 1.9522 5.6950 -5.0535 16 6 2.0415 -0.7229 1.2481 17 6 1.5044 -2.1559 1.2657 18 6 2.0105 -2.9022 0.0327 19 7 1.6523 -2.1379 -1.1699 20 6 0.9638 -2.7311 -2.1942 21 1 0.2944 -3.5537 -1.9899 22 6 1.1263 -2.2752 -3.4953 23 7 0.2247 -2.5618 -4.4105 24 14 2.6243 -1.2549 -3.9472 25 1 2.3221 0.1848 -3.7444 26 1 3.7684 -1.6467 -3.0853 27 1 2.9733 -1.4917 -5.3710 28 6 2.0413 -0.7234 -1.2498 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3633 0.5129 -0.8905 32 1 1.6767 1.9566 0.8894 33 1 3.1307 1.4418 0.0005 34 1 0.9970 1.6612 -1.8360 35 1 1.7428 3.6193 -3.5307 36 1 0.2888 4.1335 -2.6420 37 1 1.5241 6.0897 -1.7508 38 1 2.9786 5.5761 -2.6392 39 1 1.3139 8.2437 -2.9669 40 1 2.8689 7.8489 -3.7405 41 1 1.6601 9.5107 -5.0992 42 1 0.2382 8.4414 -5.1759 43 1 3.0190 7.8297 -6.2813 44 1 1.5662 8.2118 -7.2382 45 1 1.9852 5.7525 -7.1186 46 1 0.4370 6.2018 -6.3637 47 1 3.1312 -0.7438 1.2347 48 1 1.6994 -0.1960 2.1388 49 1 1.8500 -2.6629 2.1666 50 1 0.4146 -2.1360 1.2541 51 1 1.5491 -3.8888 -0.0105 52 1 3.0940 -3.0056 0.0906 53 1 -0.5156 -3.1501 -4.1944 54 1 3.1274 -0.6454 -1.2986 55 1 1.6002 -0.2727 -2.1389 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754730380.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:02 Heat of formation + Delta-G solvation = -113.249702 kcal Electronic energy + Delta-G solvation = -31066.898628 eV Core-core repulsion = 27102.170067 eV Total energy + Delta-G solvation = -3964.728561 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.19845 -40.41246 -39.83144 -36.47037 -34.97829 -34.90682 -34.51914 -33.17891 -32.27289 -31.04521 -28.15870 -27.67553 -26.87639 -26.14717 -24.74724 -23.98047 -22.64637 -21.87679 -21.34189 -21.03449 -20.15335 -18.98118 -18.19884 -17.52527 -17.13115 -16.83488 -16.60356 -16.50557 -16.05603 -15.67591 -15.54277 -15.42686 -15.23377 -15.09271 -14.86809 -14.60128 -14.53552 -14.18710 -13.90541 -13.73167 -13.68725 -13.57674 -13.23940 -13.00699 -12.80850 -12.60606 -12.43743 -12.24924 -12.15732 -12.09904 -12.07569 -11.83869 -11.70283 -11.58037 -11.56319 -11.48425 -11.18935 -11.17467 -11.09119 -10.83049 -10.54117 -10.31544 -10.05961 -9.05535 -8.43654 -5.50276 1.36678 1.52465 1.65185 1.69169 2.25931 2.49048 2.87705 3.10572 3.36808 3.65619 3.77056 3.80134 3.87084 3.88483 3.94899 3.98908 4.05697 4.15234 4.28617 4.32615 4.36206 4.37553 4.41627 4.48012 4.58449 4.61763 4.67577 4.69370 4.72986 4.77997 4.79531 4.88334 4.91234 4.94829 4.95673 5.01759 5.02712 5.10236 5.11405 5.12423 5.14523 5.19516 5.26561 5.29003 5.30824 5.40888 5.41944 5.49127 5.64021 5.81295 6.29367 6.36780 6.50631 6.94797 7.21461 7.59616 8.12219 8.90004 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013474 B = 0.002959 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.654315 B = 9461.216762 C =10974.586625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.083 4.083 3 C 0.137 3.863 4 N -0.727 5.727 5 C 0.512 3.488 6 O -0.580 6.580 7 C -0.138 4.138 8 C -0.087 4.087 9 C 0.089 3.911 10 H 0.070 0.930 11 C -0.149 4.149 12 C -0.122 4.122 13 C -0.154 4.154 14 C 0.052 3.948 15 O -0.402 6.402 16 C -0.094 4.094 17 C -0.127 4.127 18 C 0.137 3.863 19 N -0.615 5.615 20 C -0.319 4.319 21 H 0.032 0.968 22 C -0.065 4.065 23 N -0.958 5.958 24 Si 1.099 2.901 25 H -0.265 1.265 26 H -0.278 1.278 27 H -0.312 1.312 28 C 0.134 3.866 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.405 0.595 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.056 0.944 51 H 0.044 0.956 52 H 0.028 0.972 53 H 0.248 0.752 54 H 0.024 0.976 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.029 20.520 4.476 21.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.085 4.085 3 C 0.013 3.987 4 N -0.379 5.379 5 C 0.300 3.700 6 O -0.461 6.461 7 C -0.178 4.178 8 C -0.125 4.125 9 C 0.031 3.969 10 H 0.088 0.912 11 C -0.187 4.187 12 C -0.159 4.159 13 C -0.192 4.192 14 C -0.024 4.024 15 O -0.322 6.322 16 C -0.132 4.132 17 C -0.165 4.165 18 C 0.012 3.988 19 N -0.340 5.340 20 C -0.449 4.449 21 H 0.050 0.950 22 C -0.260 4.260 23 N -0.601 5.601 24 Si 0.927 3.073 25 H -0.191 1.191 26 H -0.204 1.204 27 H -0.241 1.241 28 C 0.009 3.991 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.241 0.759 35 H 0.114 0.886 36 H 0.132 0.868 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.106 0.894 45 H 0.114 0.886 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.102 0.898 49 H 0.103 0.897 50 H 0.075 0.925 51 H 0.062 0.938 52 H 0.046 0.954 53 H 0.058 0.942 54 H 0.042 0.958 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.357 21.567 3.857 22.036 hybrid contribution -1.290 -1.692 0.440 2.173 sum 1.067 19.875 4.297 20.362 Atomic orbital electron populations 1.21661 0.93761 1.01587 1.00903 1.21210 0.96891 0.93100 0.97304 1.21357 0.98610 0.90981 0.87780 1.46272 1.53544 1.12260 1.25843 1.21140 0.79395 0.81555 0.87887 1.90640 1.39815 1.66911 1.48725 1.21692 1.03707 0.96973 0.95390 1.21292 1.01364 0.93278 0.96581 1.22208 0.97246 0.92377 0.85050 0.91244 1.22184 1.01988 0.95048 0.99439 1.21606 1.00994 0.99704 0.93592 1.22180 1.01460 0.95872 0.99687 1.22734 0.99532 0.93907 0.86267 1.87944 1.70423 1.59305 1.14553 1.21389 1.00443 0.95299 0.96073 1.21863 1.00762 0.96091 0.97805 1.21048 0.96960 0.94272 0.86487 1.44363 1.66112 1.05813 1.17688 1.20080 1.19212 1.17830 0.87822 0.95002 1.27122 1.03754 1.03357 0.91773 1.70999 1.13472 1.37544 1.38060 0.83316 0.74126 0.75854 0.74026 1.19118 1.20406 1.24052 1.21440 0.96342 0.84420 0.96913 0.93322 0.91368 0.94088 0.90394 0.92219 0.75908 0.88561 0.86847 0.89333 0.92290 0.89642 0.91958 0.90479 0.91065 0.91902 0.89374 0.88647 0.92449 0.91689 0.89835 0.89714 0.92505 0.93759 0.95448 0.94215 0.95805 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.81 7.81 71.98 0.56 -3.25 16 2 C -0.08 -2.58 0.53 -52.10 -0.03 -2.60 16 3 C 0.14 3.94 4.57 86.38 0.39 4.33 16 4 N -0.73 -21.42 5.00 -463.06 -2.31 -23.73 16 5 C 0.51 15.09 7.83 87.66 0.69 15.77 16 6 O -0.58 -20.26 15.98 -3.02 -0.05 -20.31 16 7 C -0.14 -3.26 5.60 29.85 0.17 -3.09 16 8 C -0.09 -1.91 4.21 30.60 0.13 -1.78 16 9 C 0.09 1.67 2.64 30.62 0.08 1.75 16 10 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 11 C -0.15 -2.29 5.42 30.68 0.17 -2.13 16 12 C -0.12 -1.52 6.03 30.71 0.19 -1.34 16 13 C -0.15 -2.09 6.14 30.69 0.19 -1.90 16 14 C 0.05 0.88 6.84 72.02 0.49 1.37 16 15 O -0.40 -9.16 9.94 -148.98 -1.48 -10.64 16 16 C -0.09 -2.52 4.71 30.62 0.14 -2.37 16 17 C -0.13 -3.69 5.72 30.53 0.17 -3.52 16 18 C 0.14 5.22 6.49 86.22 0.56 5.78 16 19 N -0.62 -28.07 2.20 -699.94 -1.54 -29.61 16 20 C -0.32 -17.70 9.90 84.03 0.83 -16.87 16 21 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 22 C -0.06 -3.74 5.25 84.86 0.45 -3.29 16 23 N -0.96 -59.68 13.70 21.65 0.30 -59.38 16 24 Si 1.10 53.21 24.69 68.60 1.69 54.91 16 25 H -0.26 -11.42 6.52 99.48 0.65 -10.78 16 26 H -0.28 -12.96 6.75 99.48 0.67 -12.29 16 27 H -0.31 -15.62 7.11 99.48 0.71 -14.91 16 28 C 0.13 5.38 2.61 86.36 0.23 5.60 16 29 H 0.05 1.78 5.97 -2.39 -0.01 1.76 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.04 1.31 6.87 -2.39 -0.02 1.30 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 34 H 0.40 12.09 6.22 -92.70 -0.58 11.52 16 35 H 0.10 2.44 7.82 -2.38 -0.02 2.42 16 36 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.09 1.82 8.10 -2.39 -0.02 1.80 16 38 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 39 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 50 H 0.06 1.77 6.34 -2.39 -0.02 1.75 16 51 H 0.04 1.76 7.93 -2.39 -0.02 1.74 16 52 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.25 15.63 8.73 -92.71 -0.81 14.82 16 54 H 0.02 0.98 7.10 -2.38 -0.02 0.96 16 55 H 0.05 2.38 3.41 -2.38 -0.01 2.37 16 Total: -1.00 -69.47 407.26 2.15 -67.31 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.14 Total: 29.00 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 5.41 Total: -7.55 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -3.56 Total: -112.72 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -1.53 Total: -30.95 kcal Atomic # 14 Polarization: 53.21 SS G_CDS: 1.69 Total: 54.91 kcal Total: -69.47 2.15 -67.31 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754730380.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.938 kcal (2) G-P(sol) polarization free energy of solvation -69.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds