Wall clock time and date at job start Tue Mar 31 2020 21:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00170 * 2 1 4 4 C 1.52996 * 109.47085 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47235 * 184.45009 * 4 3 2 6 6 C 1.50704 * 112.85023 * 297.91734 * 5 4 3 7 7 O 1.21276 * 119.99804 * 122.09353 * 6 5 4 8 8 N 1.34774 * 119.99805 * 302.09919 * 6 5 4 9 9 C 1.46503 * 120.00126 * 184.34006 * 8 6 5 10 10 C 1.52992 * 109.47582 * 180.02562 * 9 8 6 11 11 C 1.53006 * 109.52507 * 299.92211 * 10 9 8 12 12 C 1.53039 * 109.50170 * 179.84138 * 10 9 8 13 13 C 1.53037 * 109.54124 * 178.68306 * 12 10 9 14 14 C 1.53191 * 109.31378 * 61.36192 * 13 12 10 15 15 N 1.46930 * 108.77552 * 305.36724 * 14 13 12 16 16 C 1.36936 * 120.62840 * 233.58325 * 15 14 13 17 17 H 1.08000 * 120.00276 * 29.81440 * 16 15 14 18 18 C 1.38808 * 119.99880 * 209.81227 * 16 15 14 19 19 N 1.31619 * 120.00207 * 13.06873 * 18 16 15 20 20 Si 1.86806 * 119.99911 * 193.06692 * 18 16 15 21 21 H 1.48502 * 109.46728 * 90.00182 * 20 18 16 22 22 H 1.48499 * 109.47091 * 209.99806 * 20 18 16 23 23 H 1.48491 * 109.47247 * 329.99886 * 20 18 16 24 24 C 1.46918 * 118.73877 * 53.60744 * 15 14 13 25 25 C 1.53778 * 113.61654 * 69.11208 * 5 4 3 26 26 C 1.53956 * 87.01906 * 89.23158 * 25 5 4 27 27 C 1.53781 * 113.61459 * 166.72449 * 5 4 3 28 28 H 1.09002 * 109.46588 * 60.00371 * 1 2 3 29 29 H 1.09007 * 109.47243 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47500 * 300.00248 * 1 2 3 31 31 H 1.09000 * 109.47558 * 59.99771 * 3 2 1 32 32 H 1.09000 * 109.47183 * 299.99446 * 3 2 1 33 33 H 1.09000 * 109.47281 * 64.45367 * 4 3 2 34 34 H 1.09002 * 109.47709 * 304.45267 * 4 3 2 35 35 H 0.96997 * 120.00506 * 4.33980 * 8 6 5 36 36 H 1.09006 * 109.46833 * 59.99917 * 9 8 6 37 37 H 1.08997 * 109.47076 * 300.00066 * 9 8 6 38 38 H 1.08992 * 109.47451 * 180.08234 * 11 10 9 39 39 H 1.09000 * 109.46755 * 300.08242 * 11 10 9 40 40 H 1.09000 * 109.47547 * 60.07528 * 11 10 9 41 41 H 1.09003 * 109.45869 * 58.65817 * 12 10 9 42 42 H 1.09003 * 109.45977 * 298.70415 * 12 10 9 43 43 H 1.09003 * 109.49878 * 301.41064 * 13 12 10 44 44 H 1.08997 * 109.52500 * 181.33100 * 13 12 10 45 45 H 1.09000 * 109.59014 * 185.57668 * 14 13 12 46 46 H 1.09004 * 109.58289 * 65.15204 * 14 13 12 47 47 H 0.96999 * 119.99976 * 180.02562 * 19 18 16 48 48 H 1.09003 * 109.58981 * 66.17784 * 24 15 14 49 49 H 1.09005 * 109.59023 * 186.60393 * 24 15 14 50 50 H 1.08993 * 113.61577 * 203.74701 * 25 5 4 51 51 H 1.09004 * 113.61366 * 334.65579 * 25 5 4 52 52 H 1.09007 * 113.53737 * 270.81676 * 26 25 5 53 53 H 1.08998 * 113.74797 * 139.94542 * 26 25 5 54 54 H 1.08993 * 113.62025 * 25.34444 * 27 5 4 55 55 H 1.09005 * 113.61318 * 156.16899 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 6 4.1574 2.5779 0.1126 6 6 3.8093 3.4694 -1.0516 7 8 3.2487 4.5274 -0.8587 8 7 4.1209 3.0909 -2.3069 9 6 3.8691 3.9981 -3.4294 10 6 4.3091 3.3302 -4.7337 11 6 5.8036 3.0097 -4.6653 12 6 4.0427 4.2758 -5.9071 13 6 4.5126 3.6218 -7.2084 14 6 3.7231 2.3296 -7.4399 15 7 3.8565 1.4747 -6.2524 16 6 4.2884 0.1805 -6.3695 17 1 4.9642 -0.0934 -7.1661 18 6 3.8575 -0.7795 -5.4642 19 7 2.8489 -0.5196 -4.6595 20 14 4.7092 -2.4404 -5.3879 21 1 5.8266 -2.3792 -4.4118 22 1 3.7352 -3.4769 -4.9611 23 1 5.2426 -2.7852 -6.7301 24 6 3.5173 2.0346 -4.9372 25 6 3.9403 3.2412 1.4828 26 6 5.2498 2.5650 1.9279 27 6 5.6586 2.5575 0.4454 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8630 0.7139 -0.9263 34 1 3.8514 0.5764 0.8483 35 1 4.5119 2.2178 -2.4674 36 1 4.4325 4.9200 -3.2848 37 1 2.8046 4.2269 -3.4799 38 1 6.1165 2.5353 -5.5953 39 1 6.3666 3.9318 -4.5204 40 1 5.9926 2.3340 -3.8312 41 1 4.5856 5.2083 -5.7525 42 1 2.9746 4.4840 -5.9704 43 1 5.5754 3.3908 -7.1364 44 1 4.3444 4.3050 -8.0409 45 1 4.1209 1.8094 -8.3113 46 1 2.6719 2.5678 -7.6024 47 1 2.5480 -1.1903 -4.0267 48 1 2.4493 2.2488 -4.8955 49 1 3.7794 1.3198 -4.1570 50 1 3.9983 4.3293 1.4553 51 1 3.0585 2.8765 2.0097 52 1 5.1050 1.5687 2.3458 53 1 5.8808 3.1980 2.5516 54 1 6.1621 1.6417 0.1359 55 1 6.1875 3.4578 0.1324 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754732803.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:29 Heat of formation + Delta-G solvation = -75.150727 kcal Electronic energy + Delta-G solvation = -32516.156536 eV Core-core repulsion = 28553.080071 eV Total energy + Delta-G solvation = -3963.076466 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.83566 -40.26943 -38.96165 -38.40213 -36.28774 -34.88792 -33.10332 -32.37553 -31.58548 -28.46770 -27.88924 -27.32244 -27.06395 -26.56572 -25.79330 -23.96030 -23.66025 -22.31145 -21.64138 -19.97148 -19.22400 -18.50315 -18.17896 -17.51941 -17.19531 -16.99392 -16.69397 -16.26990 -16.10216 -15.80919 -15.63000 -15.39235 -15.26778 -15.04652 -14.78379 -14.43640 -14.30020 -13.88612 -13.78763 -13.55615 -13.40640 -13.27594 -13.06210 -12.98239 -12.71022 -12.60163 -12.59518 -12.36069 -12.26730 -12.16108 -12.14772 -12.07550 -11.85178 -11.72015 -11.42154 -11.40132 -11.25944 -11.16010 -10.97698 -10.67770 -10.53267 -10.49918 -10.01835 -8.57460 -7.80018 -5.29076 1.47692 1.49958 1.57636 1.61696 2.27766 2.53617 2.67595 3.32778 3.39742 3.56990 3.62816 3.78541 3.87443 3.93286 3.95280 4.04475 4.04936 4.07242 4.20936 4.34392 4.36373 4.44250 4.48261 4.52782 4.55806 4.60024 4.72851 4.74484 4.76154 4.77180 4.80426 4.81795 4.91498 4.96907 5.00278 5.04633 5.07910 5.11293 5.13873 5.17161 5.23681 5.30759 5.33828 5.41105 5.47719 5.49379 5.55608 5.65376 5.73738 5.80456 6.14249 6.45074 6.55228 7.21276 7.22199 7.91104 8.44473 9.23721 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009044 B = 0.004741 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.330684 B = 5904.772264 C = 7407.630410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.067 3.933 4 C -0.085 4.085 5 C -0.108 4.108 6 C 0.524 3.476 7 O -0.583 6.583 8 N -0.713 5.713 9 C 0.142 3.858 10 C -0.092 4.092 11 C -0.116 4.116 12 C -0.095 4.095 13 C -0.123 4.123 14 C 0.137 3.863 15 N -0.604 5.604 16 C -0.257 4.257 17 H 0.063 0.937 18 C -0.040 4.040 19 N -0.926 5.926 20 Si 0.956 3.044 21 H -0.281 1.281 22 H -0.301 1.301 23 H -0.273 1.273 24 C 0.200 3.800 25 C -0.114 4.114 26 C -0.123 4.123 27 C -0.118 4.118 28 H 0.030 0.970 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.020 0.980 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.405 0.595 36 H 0.073 0.927 37 H 0.042 0.958 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.039 0.961 41 H 0.078 0.922 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.051 0.949 46 H 0.004 0.996 47 H 0.247 0.753 48 H -0.025 1.025 49 H 0.067 0.933 50 H 0.081 0.919 51 H 0.077 0.923 52 H 0.097 0.903 53 H 0.088 0.912 54 H 0.086 0.914 55 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.627 7.250 10.824 13.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C -0.009 4.009 4 C -0.123 4.123 5 C -0.111 4.111 6 C 0.311 3.689 7 O -0.464 6.464 8 N -0.364 5.364 9 C 0.017 3.983 10 C -0.094 4.094 11 C -0.174 4.174 12 C -0.133 4.133 13 C -0.162 4.162 14 C 0.011 3.989 15 N -0.327 5.327 16 C -0.388 4.388 17 H 0.080 0.920 18 C -0.236 4.236 19 N -0.572 5.572 20 Si 0.785 3.215 21 H -0.208 1.208 22 H -0.228 1.228 23 H -0.198 1.198 24 C 0.074 3.926 25 C -0.152 4.152 26 C -0.161 4.161 27 C -0.155 4.155 28 H 0.049 0.951 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.241 0.759 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.097 0.903 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.070 0.930 46 H 0.022 0.978 47 H 0.057 0.943 48 H -0.007 1.007 49 H 0.085 0.915 50 H 0.100 0.900 51 H 0.095 0.905 52 H 0.116 0.884 53 H 0.106 0.894 54 H 0.105 0.895 55 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.281 7.718 11.008 14.109 hybrid contribution -0.506 -1.257 -0.515 1.450 sum 3.775 6.461 10.493 12.888 Atomic orbital electron populations 1.22882 0.79814 1.03781 1.00331 1.87820 1.21278 1.28303 1.95470 1.22447 0.94502 0.84374 0.99612 1.21196 0.92651 0.94227 1.04196 1.22180 1.00460 0.94690 0.93770 1.20872 0.77093 0.86517 0.84397 1.90618 1.43579 1.26370 1.85804 1.46137 1.63551 1.20378 1.06301 1.21263 0.99550 0.92496 0.84951 1.21353 0.97460 0.97110 0.93451 1.21616 0.93662 1.00528 1.01556 1.21371 1.00502 0.97532 0.93850 1.21919 1.00310 0.96659 0.97271 1.21098 0.96068 0.91902 0.89823 1.44194 1.77574 1.09242 1.01642 1.19402 1.20486 0.85438 1.13429 0.91957 1.25693 0.97077 1.00252 1.00577 1.70139 1.26697 1.34940 1.25383 0.85446 0.77667 0.80412 0.77999 1.20759 1.22768 1.19815 1.20520 0.92144 0.91589 0.88328 1.22904 0.99659 1.00360 0.92246 1.22836 0.95934 1.02041 0.95245 1.22940 0.91423 1.03528 0.97628 0.95115 0.88293 0.92184 0.91673 0.96196 0.91984 0.87769 0.75908 0.90892 0.93939 0.92567 0.91803 0.94187 0.90323 0.93365 0.91610 0.90264 0.93011 0.97765 0.94321 1.00699 0.91506 0.90022 0.90461 0.88436 0.89374 0.89535 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.41 -13.35 10.70 -148.98 -1.59 -14.95 16 3 C 0.07 2.04 5.61 71.98 0.40 2.44 16 4 C -0.09 -2.30 4.87 30.59 0.15 -2.15 16 5 C -0.11 -2.72 0.80 -52.40 -0.04 -2.76 16 6 C 0.52 17.03 5.98 87.66 0.52 17.56 16 7 O -0.58 -22.34 16.01 -3.02 -0.05 -22.39 16 8 N -0.71 -23.66 4.95 -463.07 -2.29 -25.95 16 9 C 0.14 4.76 4.57 86.38 0.40 5.16 16 10 C -0.09 -3.20 0.53 -52.10 -0.03 -3.23 16 11 C -0.12 -3.77 7.81 71.98 0.56 -3.20 16 12 C -0.09 -2.93 4.71 30.62 0.14 -2.78 16 13 C -0.12 -3.86 5.74 30.67 0.18 -3.68 16 14 C 0.14 5.55 6.52 86.36 0.56 6.11 16 15 N -0.60 -29.11 2.43 -699.09 -1.70 -30.80 16 16 C -0.26 -13.61 9.59 84.03 0.81 -12.80 16 17 H 0.06 3.25 7.86 -2.91 -0.02 3.23 16 18 C -0.04 -2.15 5.00 84.86 0.42 -1.73 16 19 N -0.93 -52.98 11.07 21.65 0.24 -52.74 16 20 Si 0.96 43.84 29.57 68.60 2.03 45.86 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 22 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 24 C 0.20 9.20 3.69 86.36 0.32 9.52 16 25 C -0.11 -2.45 6.77 31.18 0.21 -2.23 16 26 C -0.12 -1.97 7.74 31.18 0.24 -1.73 16 27 C -0.12 -2.32 7.22 31.12 0.22 -2.10 16 28 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.71 6.87 -2.39 -0.02 1.70 16 32 H 0.02 0.71 7.62 -2.39 -0.02 0.70 16 33 H 0.06 1.95 7.60 -2.39 -0.02 1.93 16 34 H 0.10 2.35 7.31 -2.39 -0.02 2.33 16 35 H 0.40 13.80 5.64 -92.71 -0.52 13.28 16 36 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 2.01 5.97 -2.39 -0.01 2.00 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.04 1.31 6.87 -2.39 -0.02 1.30 16 41 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.07 2.06 6.33 -2.39 -0.02 2.04 16 44 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 46 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 47 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 48 H -0.03 -1.33 8.14 -2.39 -0.02 -1.35 16 49 H 0.07 3.38 4.96 -2.38 -0.01 3.37 16 50 H 0.08 1.96 7.57 -2.39 -0.02 1.94 16 51 H 0.08 1.55 6.95 -2.39 -0.02 1.54 16 52 H 0.10 1.33 7.60 -2.38 -0.02 1.32 16 53 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 54 H 0.09 1.58 8.10 -2.39 -0.02 1.56 16 55 H 0.09 1.72 8.09 -2.38 -0.02 1.70 16 Total: -1.00 -66.00 413.48 3.29 -62.71 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.33 Total: 33.90 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 6.32 Total: 4.37 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -3.75 Total: -109.50 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -1.64 Total: -37.34 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -66.00 3.29 -62.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754732803.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.441 kcal (2) G-P(sol) polarization free energy of solvation -65.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds