Wall clock time and date at job start Tue Mar 31 2020 20:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99985 * 2 1 4 4 H 1.48506 * 109.46771 * 264.67369 * 3 2 1 5 5 H 1.48501 * 109.47329 * 24.66629 * 3 2 1 6 6 H 1.48493 * 109.47228 * 144.67403 * 3 2 1 7 7 C 1.38813 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00294 * 35.72822 * 7 2 1 9 9 N 1.36944 * 119.99563 * 215.71726 * 7 2 1 10 10 C 1.47151 * 120.98199 * 40.70169 * 9 7 2 11 11 C 1.53294 * 108.38479 * 129.48094 * 10 9 7 12 12 O 1.42961 * 109.22315 * 52.29895 * 11 10 9 13 13 C 1.42956 * 114.16957 * 297.42296 * 12 11 10 14 14 C 1.47145 * 120.97807 * 220.71861 * 9 7 2 15 15 H 1.09007 * 109.68134 * 110.76202 * 14 9 7 16 16 C 1.52996 * 109.68666 * 350.23931 * 14 9 7 17 17 N 1.46505 * 109.46680 * 61.22823 * 16 14 9 18 18 C 1.34778 * 119.99671 * 179.97438 * 17 16 14 19 19 O 1.21280 * 120.00374 * 359.97438 * 18 17 16 20 20 C 1.50701 * 119.99811 * 179.97438 * 18 17 16 21 21 C 1.53007 * 109.47179 * 180.02562 * 20 18 17 22 22 C 1.52992 * 109.46999 * 180.02562 * 21 20 18 23 23 C 1.54245 * 108.89580 * 297.87999 * 22 21 20 24 24 C 1.50473 * 108.52653 * 159.26637 * 23 22 21 25 25 C 1.54072 * 112.49900 * 94.15167 * 24 23 22 26 26 C 1.54073 * 112.81434 * 318.28431 * 25 24 23 27 27 C 1.50468 * 112.49524 * 318.28415 * 26 25 24 28 28 C 1.45540 * 108.89349 * 174.99928 * 22 21 20 29 29 H 0.96998 * 119.99904 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.67986 * 249.20708 * 10 9 7 31 31 H 1.09006 * 109.67802 * 9.76133 * 10 9 7 32 32 H 1.08996 * 109.51617 * 172.22612 * 11 10 9 33 33 H 1.09000 * 109.51538 * 292.38102 * 11 10 9 34 34 H 1.09003 * 109.51604 * 302.65347 * 13 12 11 35 35 H 1.09001 * 109.55541 * 182.52761 * 13 12 11 36 36 H 1.09004 * 109.47062 * 181.22050 * 16 14 9 37 37 H 1.08994 * 109.47226 * 301.22900 * 16 14 9 38 38 H 0.96999 * 120.00234 * 0.02562 * 17 16 14 39 39 H 1.09001 * 109.47404 * 299.99951 * 20 18 17 40 40 H 1.08994 * 109.47062 * 60.00145 * 20 18 17 41 41 H 1.09001 * 109.46822 * 300.00196 * 21 20 18 42 42 H 1.08998 * 109.47003 * 59.99553 * 21 20 18 43 43 H 1.08999 * 108.87601 * 56.39290 * 22 21 20 44 44 H 1.08995 * 109.63025 * 278.97724 * 23 22 21 45 45 H 1.08995 * 109.62882 * 39.55723 * 23 22 21 46 46 H 1.08997 * 108.87598 * 333.37494 * 24 23 22 47 47 H 1.08993 * 108.79845 * 214.87462 * 24 23 22 48 48 H 1.09004 * 108.81353 * 197.42585 * 25 24 23 49 49 H 1.08998 * 108.81222 * 79.14254 * 25 24 23 50 50 H 1.09001 * 108.87108 * 197.50892 * 26 25 24 51 51 H 1.08997 * 108.87539 * 79.06244 * 26 25 24 52 52 H 1.09000 * 109.62994 * 334.44311 * 27 26 25 53 53 H 1.09003 * 109.62746 * 213.86415 * 27 26 25 54 54 H 1.08999 * 108.89940 * 303.44079 * 28 22 21 55 55 H 1.09001 * 108.89566 * 61.93202 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6103 1.9814 -1.3941 5 1 1.3959 2.6826 0.5843 6 1 3.4869 1.4753 0.8095 7 6 2.0103 -1.2022 0.0005 8 1 1.6227 -2.0497 -0.5452 9 7 3.1865 -1.3134 0.6930 10 6 3.3433 -0.7031 2.0228 11 6 3.8915 -1.7665 2.9811 12 8 5.0627 -2.3553 2.4107 13 6 4.8312 -3.0443 1.1797 14 6 4.3310 -2.0463 0.1290 15 1 5.1279 -1.3461 -0.1217 16 6 3.8919 -2.7989 -1.1286 17 7 3.4184 -1.8408 -2.1307 18 6 2.9791 -2.2789 -3.3272 19 8 2.9763 -3.4662 -3.5745 20 6 2.4915 -1.2934 -4.3577 21 6 2.0525 -2.0460 -5.6155 22 6 1.5580 -1.0454 -6.6619 23 6 0.3304 -0.3000 -6.0994 24 6 0.1614 0.9863 -6.8618 25 6 -0.8209 0.8482 -8.0407 26 6 -0.6373 -0.4680 -8.8202 27 6 0.8116 -0.8166 -9.0282 28 6 1.2562 -1.7612 -7.8927 29 1 -0.4850 0.8400 -0.0004 30 1 4.0409 0.1323 1.9633 31 1 2.3762 -0.3498 2.3808 32 1 4.1448 -1.3020 3.9341 33 1 3.1372 -2.5372 3.1400 34 1 4.0803 -3.8196 1.3319 35 1 5.7601 -3.4997 0.8362 36 1 4.7368 -3.3578 -1.5312 37 1 3.0867 -3.4889 -0.8766 38 1 3.4217 -0.8911 -1.9333 39 1 1.6462 -0.7351 -3.9553 40 1 3.2963 -0.6028 -4.6094 41 1 2.8974 -2.6046 -6.0181 42 1 1.2476 -2.7364 -5.3634 43 1 2.3488 -0.3217 -6.8592 44 1 -0.5599 -0.9170 -6.2205 45 1 0.4870 -0.0816 -5.0431 46 1 1.1323 1.2984 -7.2464 47 1 -0.2104 1.7519 -6.1809 48 1 -0.6708 1.6848 -8.7231 49 1 -1.8398 0.8897 -7.6559 50 1 -1.1201 -0.3721 -9.7927 51 1 -1.1184 -1.2751 -8.2677 52 1 1.4136 0.0917 -9.0058 53 1 0.9336 -1.3165 -9.9892 54 1 2.1458 -2.3036 -8.2129 55 1 0.4589 -2.4783 -7.6976 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754969280.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:42 Heat of formation + Delta-G solvation = -100.818330 kcal Electronic energy + Delta-G solvation = -31271.780299 eV Core-core repulsion = 27307.590802 eV Total energy + Delta-G solvation = -3964.189496 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -40.99774 -40.27566 -39.71221 -36.99507 -35.43155 -35.16977 -33.65302 -33.08075 -32.56918 -31.21653 -29.20935 -27.46495 -26.15934 -25.34405 -25.11511 -23.72700 -22.90295 -21.60227 -21.10087 -20.96513 -20.07670 -18.77934 -17.88116 -17.52297 -17.27786 -16.81215 -16.57241 -16.39727 -16.30785 -15.98595 -15.59461 -15.51404 -15.39998 -15.05904 -14.72460 -14.50099 -14.42350 -14.33355 -13.86549 -13.75973 -13.47794 -13.36772 -13.14021 -13.01509 -12.86147 -12.74072 -12.67890 -12.55076 -12.26217 -12.08677 -11.99829 -11.61978 -11.51643 -11.39500 -11.32676 -11.26657 -11.18933 -11.12685 -11.01401 -10.91305 -10.65280 -10.36543 -9.84421 -8.64639 -8.24629 -5.52561 1.37226 1.47762 1.54016 1.78190 2.41454 2.47967 2.86521 3.01251 3.29034 3.65153 3.73001 3.85542 3.99181 4.00866 4.10617 4.17239 4.19610 4.25606 4.35556 4.38219 4.38813 4.44433 4.46437 4.47369 4.55776 4.57538 4.60296 4.63700 4.70166 4.77483 4.84301 4.87848 4.97147 4.97464 4.99195 5.06090 5.12302 5.16719 5.23677 5.26557 5.30631 5.33661 5.37775 5.40718 5.42118 5.54397 5.62825 5.63823 5.66468 5.89350 6.23344 6.27879 6.73472 6.92343 7.39675 7.59632 8.11173 8.93854 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015421 B = 0.003009 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.273735 B = 9303.622384 C =10620.949439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.015 3.985 3 Si 0.887 3.113 4 H -0.276 1.276 5 H -0.308 1.308 6 H -0.246 1.246 7 C -0.255 4.255 8 H 0.042 0.958 9 N -0.610 5.610 10 C 0.106 3.894 11 C 0.051 3.949 12 O -0.392 6.392 13 C 0.058 3.942 14 C 0.121 3.879 15 H 0.053 0.947 16 C 0.143 3.857 17 N -0.697 5.697 18 C 0.504 3.496 19 O -0.596 6.596 20 C -0.137 4.137 21 C -0.090 4.090 22 C -0.074 4.074 23 C -0.119 4.119 24 C -0.117 4.117 25 C -0.115 4.115 26 C -0.119 4.119 27 C -0.111 4.111 28 C -0.112 4.112 29 H 0.263 0.737 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.114 0.886 33 H 0.043 0.957 34 H 0.045 0.955 35 H 0.121 0.879 36 H 0.080 0.920 37 H 0.039 0.961 38 H 0.407 0.593 39 H 0.089 0.911 40 H 0.111 0.889 41 H 0.065 0.935 42 H 0.045 0.955 43 H 0.078 0.922 44 H 0.057 0.943 45 H 0.052 0.948 46 H 0.068 0.932 47 H 0.051 0.949 48 H 0.066 0.934 49 H 0.052 0.948 50 H 0.066 0.934 51 H 0.051 0.949 52 H 0.069 0.931 53 H 0.071 0.929 54 H 0.063 0.937 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.855 1.438 -12.175 13.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.185 4.185 3 Si 0.713 3.287 4 H -0.202 1.202 5 H -0.236 1.236 6 H -0.170 1.170 7 C -0.383 4.383 8 H 0.060 0.940 9 N -0.337 5.337 10 C -0.019 4.019 11 C -0.027 4.027 12 O -0.310 6.310 13 C -0.020 4.020 14 C 0.016 3.984 15 H 0.071 0.929 16 C 0.019 3.981 17 N -0.346 5.346 18 C 0.292 3.708 19 O -0.479 6.479 20 C -0.177 4.177 21 C -0.128 4.128 22 C -0.092 4.092 23 C -0.157 4.157 24 C -0.155 4.155 25 C -0.153 4.153 26 C -0.156 4.156 27 C -0.149 4.149 28 C -0.150 4.150 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.132 0.868 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.139 0.861 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.243 0.757 39 H 0.107 0.893 40 H 0.129 0.871 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.087 0.913 47 H 0.070 0.930 48 H 0.085 0.915 49 H 0.071 0.929 50 H 0.085 0.915 51 H 0.070 0.930 52 H 0.087 0.913 53 H 0.090 0.910 54 H 0.082 0.918 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.884 0.697 -12.244 13.602 hybrid contribution -0.710 1.304 0.372 1.530 sum 5.174 2.001 -11.872 13.104 Atomic orbital electron populations 1.70197 1.08015 1.27587 1.50045 1.25922 0.94833 0.99945 0.97813 0.86693 0.80755 0.82158 0.79086 1.20244 1.23583 1.17049 1.18275 0.96219 0.94617 1.29228 0.94041 1.44467 1.10761 1.63475 1.14982 1.22006 0.99307 0.95020 0.85536 1.23083 0.87459 0.95564 0.96602 1.87824 1.33217 1.72104 1.37887 1.22963 1.01942 0.93045 0.84054 1.21702 0.90226 0.94082 0.92390 0.92906 1.21051 0.98128 0.91410 0.87554 1.45968 1.63612 1.11353 1.13685 1.21174 0.76519 0.89685 0.83376 1.90596 1.57753 1.18977 1.80562 1.21778 1.03094 0.98060 0.94745 1.21370 1.00639 0.97352 0.93397 1.20061 0.97609 0.97103 0.94477 1.21490 0.98028 0.97078 0.99083 1.21311 1.00332 0.96889 0.96927 1.21901 0.98779 0.97937 0.96635 1.21344 0.97096 0.97261 0.99938 1.21292 0.96236 0.99506 0.97829 1.20512 1.01515 0.98307 0.94658 0.92822 0.94594 0.92427 0.86773 0.93813 0.93668 0.86108 0.90184 0.94278 0.75729 0.89268 0.87062 0.91629 0.93605 0.90384 0.92458 0.92901 0.91342 0.93033 0.91482 0.92888 0.91535 0.93039 0.91274 0.91044 0.91806 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.48 13.97 21.65 0.30 -52.18 16 2 C 0.02 0.79 4.84 84.86 0.41 1.20 16 3 Si 0.89 39.72 27.49 68.60 1.89 41.60 16 4 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.31 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.25 -10.42 5.22 99.48 0.52 -9.90 16 7 C -0.25 -12.74 6.84 84.03 0.58 -12.17 16 8 H 0.04 2.40 6.56 -2.91 -0.02 2.38 16 9 N -0.61 -25.88 2.52 -673.72 -1.70 -27.58 16 10 C 0.11 4.17 4.83 86.35 0.42 4.58 16 11 C 0.05 1.66 6.98 72.08 0.50 2.16 16 12 O -0.39 -12.91 10.74 -148.98 -1.60 -14.51 16 13 C 0.06 1.80 6.29 72.08 0.45 2.25 16 14 C 0.12 4.29 3.20 44.97 0.14 4.44 16 15 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 16 C 0.14 5.19 4.47 86.38 0.39 5.58 16 17 N -0.70 -26.24 3.98 -463.06 -1.84 -28.08 16 18 C 0.50 19.10 7.83 87.66 0.69 19.79 16 19 O -0.60 -26.01 15.98 -3.03 -0.05 -26.06 16 20 C -0.14 -4.16 5.45 29.85 0.16 -4.00 16 21 C -0.09 -2.48 3.90 30.59 0.12 -2.36 16 22 C -0.07 -1.63 1.72 -12.65 -0.02 -1.65 16 23 C -0.12 -2.87 4.91 30.20 0.15 -2.72 16 24 C -0.12 -2.39 5.31 30.14 0.16 -2.23 16 25 C -0.11 -2.03 5.85 31.32 0.18 -1.84 16 26 C -0.12 -1.99 5.31 30.14 0.16 -1.83 16 27 C -0.11 -1.78 5.61 30.20 0.17 -1.61 16 28 C -0.11 -2.18 4.44 28.74 0.13 -2.05 16 29 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 30 H 0.04 1.41 6.58 -2.39 -0.02 1.39 16 31 H 0.06 2.46 7.24 -2.38 -0.02 2.44 16 32 H 0.11 3.02 8.14 -2.39 -0.02 3.01 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 36 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.04 1.65 7.50 -2.39 -0.02 1.63 16 38 H 0.41 15.51 7.37 -92.71 -0.68 14.82 16 39 H 0.09 2.93 6.08 -2.39 -0.01 2.91 16 40 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 41 H 0.06 1.81 8.03 -2.39 -0.02 1.79 16 42 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 43 H 0.08 1.55 7.46 -2.39 -0.02 1.53 16 44 H 0.06 1.44 6.98 -2.39 -0.02 1.43 16 45 H 0.05 1.47 5.73 -2.39 -0.01 1.46 16 46 H 0.07 1.27 6.63 -2.39 -0.02 1.25 16 47 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 49 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.05 0.97 6.63 -2.39 -0.02 0.95 16 52 H 0.07 1.07 6.98 -2.39 -0.02 1.05 16 53 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 54 H 0.06 1.17 8.06 -2.39 -0.02 1.15 16 55 H 0.05 1.10 7.47 -2.39 -0.02 1.09 16 Total: -1.00 -62.77 401.35 1.77 -60.99 By element: Atomic # 1 Polarization: 38.29 SS G_CDS: -0.01 Total: 38.28 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 4.78 Total: 7.53 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -3.24 Total: -107.84 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -1.65 Total: -40.57 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 1.89 Total: 41.60 kcal Total: -62.77 1.77 -60.99 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754969280.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.828 kcal (2) G-P(sol) polarization free energy of solvation -62.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds