Wall clock time and date at job start Tue Mar 31 2020 21:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46848 * 2 1 4 4 C 1.52999 * 109.47050 * 240.00274 * 2 1 3 5 5 C 1.53006 * 109.46601 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47312 * 60.00296 * 5 4 2 7 7 C 1.52999 * 109.46824 * 299.99751 * 6 5 4 8 8 C 1.52996 * 109.47099 * 119.99983 * 2 1 3 9 9 H 1.08997 * 109.47379 * 60.00116 * 8 2 1 10 10 C 1.52999 * 109.47407 * 300.00073 * 8 2 1 11 11 C 1.50695 * 109.47441 * 174.99907 * 10 8 2 12 12 O 1.21283 * 120.00050 * 0.02562 * 11 10 8 13 13 N 1.34777 * 120.00252 * 179.97438 * 11 10 8 14 14 C 1.46501 * 119.99883 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47071 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.67839 * 59.19102 * 15 14 13 17 17 C 1.53289 * 109.68569 * 179.70478 * 15 14 13 18 18 O 1.42961 * 109.22876 * 172.06183 * 17 15 14 19 19 C 1.42959 * 114.16743 * 297.42471 * 18 17 15 20 20 C 1.53298 * 109.22184 * 62.57606 * 19 18 17 21 21 N 1.47150 * 108.38520 * 307.69629 * 20 19 18 22 22 C 1.36933 * 120.98340 * 230.55860 * 21 20 19 23 23 H 1.08000 * 120.00109 * 148.41689 * 22 21 20 24 24 C 1.38812 * 119.99978 * 328.41522 * 22 21 20 25 25 N 1.31612 * 119.99946 * 349.19794 * 24 22 21 26 26 Si 1.86801 * 119.99830 * 169.19646 * 24 22 21 27 27 H 1.48499 * 109.47223 * 90.00208 * 26 24 22 28 28 H 1.48504 * 109.47043 * 210.00351 * 26 24 22 29 29 H 1.48497 * 109.47293 * 329.99946 * 26 24 22 30 30 H 1.09000 * 109.47171 * 299.99873 * 1 2 3 31 31 H 1.08998 * 109.47325 * 59.99645 * 1 2 3 32 32 H 1.09001 * 109.47358 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46818 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47766 * 299.99967 * 3 2 1 35 35 H 1.09000 * 109.47131 * 60.00102 * 3 2 1 36 36 H 1.08993 * 109.47086 * 60.00325 * 4 2 1 37 37 H 1.08997 * 109.46887 * 299.99552 * 4 2 1 38 38 H 1.08997 * 109.47244 * 299.99467 * 5 4 2 39 39 H 1.09000 * 109.46721 * 179.97438 * 5 4 2 40 40 H 1.08994 * 109.47361 * 179.97438 * 6 5 4 41 41 H 1.09001 * 109.47257 * 59.99103 * 6 5 4 42 42 H 1.09008 * 109.47046 * 299.99816 * 7 6 5 43 43 H 1.08998 * 109.47276 * 180.02562 * 7 6 5 44 44 H 1.08999 * 109.46873 * 54.99998 * 10 8 2 45 45 H 1.09004 * 109.47385 * 295.00337 * 10 8 2 46 46 H 0.96996 * 120.00058 * 0.02562 * 13 11 10 47 47 H 1.08999 * 109.47158 * 60.00386 * 14 13 11 48 48 H 1.08997 * 109.47490 * 300.00130 * 14 13 11 49 49 H 1.09001 * 109.51817 * 291.99070 * 17 15 14 50 50 H 1.09003 * 109.51169 * 52.13541 * 17 15 14 51 51 H 1.08998 * 109.51441 * 182.49761 * 19 18 17 52 52 H 1.08996 * 109.51127 * 302.60401 * 19 18 17 53 53 H 1.09000 * 109.68309 * 67.42253 * 20 19 18 54 54 H 1.09006 * 109.67997 * 187.93781 * 20 19 18 55 55 H 0.97005 * 119.99749 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2495 6 6 4.0805 -1.4415 -0.0003 7 6 3.5705 -0.7203 1.2489 8 6 2.0400 -0.7212 1.2492 9 1 1.6767 -1.7489 1.2492 10 6 1.5300 0.0000 2.4985 11 6 1.9286 -0.7783 3.7258 12 8 2.5590 -1.8082 3.6125 13 7 1.5855 -0.3294 4.9494 14 6 1.9726 -1.0864 6.1425 15 6 1.4627 -0.3651 7.3917 16 1 0.3777 -0.2718 7.3446 17 6 1.8588 -1.1571 8.6430 18 8 1.5434 -0.3882 9.8063 19 6 2.2574 0.8466 9.9030 20 6 1.8816 1.7412 8.7162 21 7 2.0719 0.9717 7.4765 22 6 2.7948 1.4844 6.4326 23 1 3.3555 0.8236 5.7880 24 6 2.8070 2.8533 6.2028 25 7 1.9657 3.6358 6.8449 26 14 4.0174 3.5848 4.9825 27 1 3.4014 3.6145 3.6316 28 1 4.3653 4.9672 5.3985 29 1 5.2478 2.7541 4.9472 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.6767 -0.2073 -2.1392 37 1 1.6767 -1.7488 -1.2492 38 1 3.9330 0.3072 -1.2497 39 1 3.9334 -1.2348 -2.1393 40 1 5.1705 -1.4415 -0.0007 41 1 3.7175 -2.4693 -0.0001 42 1 3.9335 0.3075 1.2487 43 1 3.9345 -1.2336 2.1389 44 1 0.4437 0.0781 2.4548 45 1 1.9645 0.9986 2.5444 46 1 1.0817 0.4945 5.0401 47 1 3.0589 -1.1654 6.1860 48 1 1.5373 -2.0846 6.0966 49 1 1.3085 -2.0976 8.6681 50 1 2.9293 -1.3613 8.6209 51 1 1.9937 1.3476 10.8344 52 1 3.3293 0.6496 9.8863 53 1 0.8388 2.0465 8.8024 54 1 2.5224 2.6229 8.7038 55 1 1.9745 4.5925 6.6846 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754974143.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:19 Heat of formation + Delta-G solvation = -99.409048 kcal Electronic energy + Delta-G solvation = -32219.875972 eV Core-core repulsion = 28255.747586 eV Total energy + Delta-G solvation = -3964.128385 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 3.50 seconds Orbital eigenvalues (eV) -41.42475 -40.36156 -39.53442 -36.91985 -35.27188 -34.36871 -33.38344 -33.05293 -32.11872 -29.25454 -28.82146 -28.17939 -27.14104 -26.10686 -25.23321 -23.56173 -22.83139 -21.86373 -21.43729 -20.90025 -19.05617 -18.73922 -17.73331 -17.58374 -17.21997 -16.50042 -16.35494 -16.21521 -16.09666 -15.79056 -15.54921 -15.30938 -15.26637 -14.94861 -14.73499 -14.63572 -14.29227 -13.91022 -13.78674 -13.54438 -13.34231 -13.15735 -12.89528 -12.76888 -12.72549 -12.69264 -12.51029 -12.41871 -12.24891 -12.17051 -12.10537 -12.00979 -11.89596 -11.85174 -11.58666 -11.30618 -11.08009 -10.98293 -10.75789 -10.72070 -10.57024 -10.38671 -9.77173 -8.61300 -7.87008 -5.38015 1.39364 1.45433 1.51103 1.81591 2.40563 2.48970 3.02893 3.29516 3.44227 3.68551 3.74164 3.79677 4.03738 4.07701 4.16861 4.21845 4.24730 4.33003 4.40069 4.45510 4.47029 4.49056 4.54970 4.61352 4.63395 4.64590 4.66583 4.72289 4.76234 4.83019 4.85109 4.89135 4.99848 5.03182 5.07540 5.10827 5.11723 5.22235 5.23425 5.26325 5.30081 5.30800 5.35454 5.45210 5.55987 5.58861 5.61426 5.67393 5.70409 5.75038 6.29059 6.37482 6.78004 7.11224 7.43389 7.76641 8.33312 9.17595 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013924 B = 0.003633 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.383115 B = 7705.931044 C = 8707.079558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.150 4.150 4 C -0.102 4.102 5 C -0.119 4.119 6 C -0.113 4.113 7 C -0.122 4.122 8 C -0.046 4.046 9 H 0.065 0.935 10 C -0.137 4.137 11 C 0.505 3.495 12 O -0.584 6.584 13 N -0.701 5.701 14 C 0.144 3.856 15 C 0.127 3.873 16 H 0.036 0.964 17 C 0.057 3.943 18 O -0.397 6.397 19 C 0.046 3.954 20 C 0.150 3.850 21 N -0.605 5.605 22 C -0.239 4.239 23 H 0.066 0.934 24 C -0.030 4.030 25 N -0.926 5.926 26 Si 0.940 3.060 27 H -0.275 1.275 28 H -0.296 1.296 29 H -0.285 1.285 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.109 0.891 45 H 0.087 0.913 46 H 0.409 0.591 47 H 0.046 0.954 48 H 0.077 0.923 49 H 0.117 0.883 50 H 0.048 0.952 51 H 0.105 0.895 52 H 0.043 0.957 53 H 0.007 0.993 54 H 0.065 0.935 55 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.157 -7.158 -11.706 13.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.056 4.056 3 C -0.207 4.207 4 C -0.140 4.140 5 C -0.156 4.156 6 C -0.150 4.150 7 C -0.160 4.160 8 C -0.065 4.065 9 H 0.083 0.917 10 C -0.176 4.176 11 C 0.294 3.706 12 O -0.466 6.466 13 N -0.351 5.351 14 C 0.019 3.981 15 C 0.020 3.980 16 H 0.054 0.946 17 C -0.021 4.021 18 O -0.316 6.316 19 C -0.032 4.032 20 C 0.024 3.976 21 N -0.331 5.331 22 C -0.369 4.369 23 H 0.084 0.916 24 C -0.226 4.226 25 N -0.571 5.571 26 Si 0.769 3.231 27 H -0.201 1.201 28 H -0.223 1.223 29 H -0.211 1.211 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.128 0.872 45 H 0.105 0.895 46 H 0.246 0.754 47 H 0.064 0.936 48 H 0.095 0.905 49 H 0.135 0.865 50 H 0.066 0.934 51 H 0.123 0.877 52 H 0.061 0.939 53 H 0.025 0.975 54 H 0.083 0.917 55 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.869 -7.761 -11.645 14.119 hybrid contribution 0.743 1.421 -0.227 1.620 sum -1.125 -6.340 -11.872 13.506 Atomic orbital electron populations 1.21942 0.93873 1.02067 1.02256 1.20518 0.95781 0.95101 0.94222 1.22052 1.01237 0.95571 1.01806 1.21553 0.95252 1.00389 0.96786 1.21583 0.96008 1.00734 0.97262 1.21458 0.99890 0.99202 0.94455 1.21704 0.95673 1.00005 0.98599 1.20793 0.95096 0.98605 0.92025 0.91654 1.21885 1.03879 0.99841 0.92024 1.21087 0.78797 0.85359 0.85405 1.90582 1.42151 1.26561 1.87317 1.46093 1.56473 1.27424 1.05140 1.21043 0.99046 0.94185 0.83814 1.21541 0.95830 0.86732 0.93871 0.94590 1.22990 1.00209 0.94211 0.84736 1.87803 1.67209 1.33405 1.43164 1.23219 0.95167 0.85189 0.99628 1.21223 0.97877 0.93990 0.84462 1.44291 1.60555 1.14731 1.13532 1.19214 1.20762 0.90408 1.06555 0.91623 1.25584 0.99207 0.97746 1.00110 1.70093 1.37672 1.03828 1.45555 0.85705 0.79770 0.77342 0.80300 1.20074 1.22278 1.21058 0.92609 0.91498 0.92396 0.92659 0.91505 0.93478 0.90668 0.91922 0.91871 0.91010 0.92377 0.92449 0.93099 0.93042 0.87246 0.89487 0.75404 0.93604 0.90525 0.86509 0.93415 0.87739 0.93911 0.97500 0.91704 0.94074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.13 71.98 0.59 -2.03 16 2 C -0.06 -1.15 0.54 -52.18 -0.03 -1.18 16 3 C -0.15 -3.21 7.43 71.98 0.53 -2.68 16 4 C -0.10 -1.82 4.73 30.60 0.14 -1.67 16 5 C -0.12 -2.21 5.65 30.59 0.17 -2.04 16 6 C -0.11 -2.61 5.92 30.59 0.18 -2.43 16 7 C -0.12 -3.50 4.67 30.61 0.14 -3.36 16 8 C -0.05 -1.21 1.14 -10.78 -0.01 -1.22 16 9 H 0.07 1.84 7.95 -2.39 -0.02 1.82 16 10 C -0.14 -3.95 4.45 29.85 0.13 -3.82 16 11 C 0.51 17.99 7.55 87.66 0.66 18.65 16 12 O -0.58 -23.53 13.97 -3.04 -0.04 -23.57 16 13 N -0.70 -25.72 3.82 -463.07 -1.77 -27.49 16 14 C 0.14 5.19 4.44 86.38 0.38 5.58 16 15 C 0.13 4.80 3.20 44.96 0.14 4.95 16 16 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 17 C 0.06 1.90 6.29 72.08 0.45 2.35 16 18 O -0.40 -14.61 10.74 -148.98 -1.60 -16.21 16 19 C 0.05 1.70 6.99 72.08 0.50 2.20 16 20 C 0.15 6.82 5.37 86.36 0.46 7.28 16 21 N -0.61 -27.63 3.03 -673.73 -2.04 -29.67 16 22 C -0.24 -11.76 7.09 84.03 0.60 -11.17 16 23 H 0.07 3.31 5.84 -2.91 -0.02 3.30 16 24 C -0.03 -1.52 5.05 84.86 0.43 -1.10 16 25 N -0.93 -50.12 11.17 21.65 0.24 -49.88 16 26 Si 0.94 42.48 29.57 68.60 2.03 44.50 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 29 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 30 H 0.05 1.05 6.32 -2.39 -0.02 1.04 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.05 1.25 4.80 -2.39 -0.01 1.24 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 1.12 6.54 -2.39 -0.02 1.10 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.20 6.43 -2.39 -0.02 1.18 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.05 1.49 6.43 -2.38 -0.02 1.47 16 43 H 0.05 1.81 5.96 -2.39 -0.01 1.79 16 44 H 0.11 2.72 6.17 -2.39 -0.01 2.70 16 45 H 0.09 2.68 6.71 -2.39 -0.02 2.66 16 46 H 0.41 15.84 7.39 -92.71 -0.68 15.16 16 47 H 0.05 1.84 7.52 -2.39 -0.02 1.82 16 48 H 0.08 2.46 8.14 -2.39 -0.02 2.45 16 49 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 50 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 52 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 53 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 54 H 0.06 3.28 6.36 -2.38 -0.02 3.27 16 55 H 0.25 13.34 8.31 -92.70 -0.77 12.56 16 Total: -1.00 -59.05 397.12 2.49 -56.56 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: 0.19 Total: 37.45 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 5.49 Total: 8.32 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -3.57 Total: -107.04 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -1.64 Total: -39.78 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -59.05 2.49 -56.56 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754974143.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.853 kcal (2) G-P(sol) polarization free energy of solvation -59.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.50 seconds