Wall clock time and date at job start Tue Mar 31 2020 20:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99865 * 2 1 4 4 H 1.48496 * 109.47149 * 239.99852 * 3 2 1 5 5 H 1.48498 * 109.47009 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46965 * 119.99617 * 3 2 1 7 7 C 1.38814 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00391 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99716 * 0.02562 * 7 2 1 10 10 C 1.47581 * 134.49101 * 179.97438 * 9 7 2 11 11 C 1.53950 * 86.11424 * 155.36082 * 10 9 7 12 12 C 1.53000 * 113.74109 * 269.15312 * 11 10 9 13 13 C 1.52997 * 109.47091 * 172.51690 * 12 11 10 14 14 O 1.42897 * 109.47030 * 175.19140 * 13 12 11 15 15 N 1.46499 * 113.74005 * 137.95727 * 11 10 9 16 16 C 1.34772 * 120.00481 * 74.85739 * 15 11 10 17 17 O 1.21288 * 119.99759 * 355.08184 * 16 15 11 18 18 C 1.50703 * 120.00323 * 175.07656 * 16 15 11 19 19 C 1.52995 * 109.47011 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.47181 * 180.02562 * 19 18 16 21 21 C 1.50466 * 109.62922 * 65.95978 * 20 19 18 22 22 C 1.54066 * 112.50309 * 213.86126 * 21 20 19 23 23 C 1.54068 * 112.81774 * 318.28388 * 22 21 20 24 24 C 1.50475 * 112.49609 * 318.28659 * 23 22 21 25 25 C 1.54239 * 108.51615 * 94.15184 * 24 23 22 26 26 C 1.45542 * 112.41036 * 280.00226 * 25 24 23 27 27 C 1.47812 * 134.45659 * 359.86823 * 9 7 2 28 28 H 0.96992 * 120.00534 * 0.02562 * 1 2 3 29 29 H 1.09004 * 113.76594 * 41.05950 * 10 9 7 30 30 H 1.08997 * 113.87257 * 269.67523 * 10 9 7 31 31 H 1.09000 * 109.47459 * 292.52043 * 12 11 10 32 32 H 1.09000 * 109.46855 * 52.51537 * 12 11 10 33 33 H 1.09008 * 109.46921 * 295.18882 * 13 12 11 34 34 H 1.08997 * 109.47093 * 55.18637 * 13 12 11 35 35 H 0.96699 * 114.00402 * 179.97438 * 14 13 12 36 36 H 0.97000 * 119.99764 * 254.85813 * 15 11 10 37 37 H 1.08998 * 109.46410 * 60.00392 * 18 16 15 38 38 H 1.08992 * 109.46971 * 300.00203 * 18 16 15 39 39 H 1.09003 * 109.47232 * 60.00058 * 19 18 16 40 40 H 1.09005 * 109.47563 * 299.99930 * 19 18 16 41 41 H 1.09002 * 109.77703 * 305.48224 * 20 19 18 42 42 H 1.09000 * 108.87585 * 334.64113 * 21 20 19 43 43 H 1.09004 * 108.87595 * 93.18244 * 21 20 19 44 44 H 1.08998 * 108.81683 * 197.42577 * 22 21 20 45 45 H 1.08998 * 108.81180 * 79.14355 * 22 21 20 46 46 H 1.08995 * 108.87788 * 197.50444 * 23 22 21 47 47 H 1.09000 * 108.87689 * 79.05765 * 23 22 21 48 48 H 1.08999 * 109.63066 * 213.86229 * 24 23 22 49 49 H 1.09005 * 109.62842 * 334.24918 * 24 23 22 50 50 H 1.09000 * 108.89172 * 40.75499 * 25 24 23 51 51 H 1.09000 * 108.88935 * 159.24816 * 25 24 23 52 52 H 1.08993 * 108.89546 * 182.69413 * 26 25 24 53 53 H 1.09005 * 108.89319 * 301.18226 * 26 25 24 54 54 H 1.09000 * 113.77044 * 90.37755 * 27 9 7 55 55 H 1.09002 * 113.83613 * 318.91300 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7203 -3.8101 0.0005 11 6 0.3471 -4.0829 0.6409 12 6 0.3645 -4.0562 2.1705 13 6 -1.0683 -4.1512 2.6986 14 8 -1.0455 -4.2390 4.1247 15 7 -0.3331 -5.2614 0.0980 16 6 0.0813 -6.4968 0.4419 17 8 1.0715 -6.6350 1.1286 18 6 -0.6855 -7.7066 -0.0267 19 6 -0.0093 -8.9742 0.4992 20 6 -0.7874 -10.2025 0.0229 21 6 -0.6861 -10.3159 -1.4740 22 6 -1.9657 -10.8922 -2.1097 23 6 -2.5550 -12.0672 -1.3061 24 6 -1.4955 -13.0112 -0.8056 25 6 -1.1092 -12.5977 0.6292 26 6 -0.1840 -11.4745 0.6529 27 6 -0.1057 -2.7571 0.0025 28 1 -0.4850 0.8399 -0.0004 29 1 2.5626 -4.0323 0.6558 30 1 1.8328 -4.2367 -0.9962 31 1 0.9454 -4.9004 2.5422 32 1 0.8169 -3.1253 2.5125 33 1 -1.6258 -3.2640 2.3981 34 1 -1.5489 -5.0388 2.2875 35 1 -1.9216 -4.3018 4.5290 36 1 -1.0819 -5.1525 -0.5089 37 1 -0.7003 -7.7276 -1.1164 38 1 -1.7072 -7.6573 0.3497 39 1 0.0052 -8.9529 1.5889 40 1 1.0127 -9.0237 0.1231 41 1 -1.8341 -10.1113 0.3131 42 1 -0.5002 -9.3260 -1.8909 43 1 0.1530 -10.9659 -1.7225 44 1 -1.7331 -11.2371 -3.1172 45 1 -2.7127 -10.1012 -2.1750 46 1 -3.2463 -12.6186 -1.9433 47 1 -3.1051 -11.6702 -0.4529 48 1 -1.8848 -14.0293 -0.8010 49 1 -0.6207 -12.9567 -1.4536 50 1 -2.0131 -12.3220 1.1725 51 1 -0.6449 -13.4481 1.1287 52 1 0.0868 -11.2620 1.6870 53 1 0.7167 -11.7475 0.1030 54 1 -0.5311 -2.8722 -0.9944 55 1 -0.7188 -2.1400 0.6593 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755333813.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:12 Heat of formation + Delta-G solvation = -87.814172 kcal Electronic energy + Delta-G solvation = -30672.482455 eV Core-core repulsion = 26708.856861 eV Total energy + Delta-G solvation = -3963.625594 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.48559 -40.18541 -39.21833 -37.71365 -35.31085 -35.14334 -33.76174 -33.27337 -32.02925 -30.90447 -29.01784 -26.84642 -26.71080 -25.42922 -24.98530 -23.51521 -22.95295 -21.34716 -21.12427 -20.16416 -19.84876 -18.78688 -18.41428 -18.02950 -17.13651 -16.73948 -16.55132 -16.25188 -15.98837 -15.79383 -15.61267 -15.32387 -15.23218 -15.05645 -14.68840 -14.39916 -14.24476 -13.78335 -13.75656 -13.36810 -13.33638 -13.15254 -13.05375 -12.93665 -12.79143 -12.67415 -12.59576 -12.58598 -12.25200 -12.07875 -11.88561 -11.74198 -11.49724 -11.43303 -11.38608 -11.27190 -11.14245 -11.01202 -10.96815 -10.87746 -10.84712 -10.48696 -9.96285 -8.97140 -7.94054 -5.27079 1.44968 1.48145 1.53964 1.79941 2.21765 2.50330 3.15112 3.25603 3.38621 3.64389 3.71788 3.79429 3.84381 4.07351 4.12943 4.20127 4.23422 4.27956 4.33041 4.37185 4.42139 4.48114 4.49056 4.58131 4.59067 4.70076 4.70838 4.71644 4.80651 4.85287 4.87688 5.00302 5.05578 5.06918 5.13518 5.18459 5.20293 5.22656 5.27803 5.30539 5.38313 5.38757 5.41747 5.46659 5.46870 5.52927 5.55712 5.66072 5.72058 5.76433 5.89014 6.74183 6.89457 6.90432 7.44545 7.55676 8.49306 9.22650 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.002225 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.470676 B =12581.022719 C =13161.652547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.059 4.059 3 Si 0.978 3.022 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.238 4.238 8 H 0.078 0.922 9 N -0.633 5.633 10 C 0.121 3.879 11 C 0.157 3.843 12 C -0.090 4.090 13 C 0.094 3.906 14 O -0.592 6.592 15 N -0.709 5.709 16 C 0.507 3.493 17 O -0.578 6.578 18 C -0.131 4.131 19 C -0.093 4.093 20 C -0.074 4.074 21 C -0.118 4.118 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.117 4.117 25 C -0.115 4.115 26 C -0.113 4.113 27 C 0.172 3.828 28 H 0.252 0.748 29 H 0.036 0.964 30 H 0.044 0.956 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.396 0.604 36 H 0.415 0.585 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.060 0.940 50 H 0.061 0.939 51 H 0.058 0.942 52 H 0.052 0.948 53 H 0.054 0.946 54 H 0.036 0.964 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.474 -25.302 -2.043 27.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.252 4.252 3 Si 0.806 3.194 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.367 4.367 8 H 0.096 0.904 9 N -0.360 5.360 10 C -0.006 4.006 11 C 0.069 3.931 12 C -0.129 4.129 13 C 0.016 3.984 14 O -0.401 6.401 15 N -0.362 5.362 16 C 0.295 3.705 17 O -0.457 6.457 18 C -0.170 4.170 19 C -0.131 4.131 20 C -0.093 4.093 21 C -0.155 4.155 22 C -0.152 4.152 23 C -0.156 4.156 24 C -0.154 4.154 25 C -0.153 4.153 26 C -0.151 4.151 27 C 0.046 3.954 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.246 0.754 36 H 0.252 0.748 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.079 0.921 50 H 0.080 0.920 51 H 0.077 0.923 52 H 0.071 0.929 53 H 0.072 0.928 54 H 0.054 0.946 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.108 -25.027 -1.651 26.684 hybrid contribution -0.051 1.340 -0.295 1.373 sum -9.159 -23.688 -1.946 25.471 Atomic orbital electron populations 1.69925 1.06090 1.25930 1.57554 1.25558 0.96694 1.00531 1.02463 0.85168 0.77277 0.78849 0.78114 1.20385 1.21497 1.20613 1.19265 0.90644 0.83058 1.43687 0.90428 1.45997 1.03539 1.00155 1.86300 1.22946 0.96180 0.84199 0.97228 1.22128 0.93271 0.85083 0.92625 1.21179 0.97512 1.01562 0.92629 1.21937 0.95965 1.00020 0.80463 1.86441 1.35962 1.97314 1.20368 1.46034 1.36345 1.04536 1.49271 1.21499 0.84659 0.85162 0.79148 1.90680 1.28008 1.86814 1.40180 1.21789 1.00764 0.90491 1.04003 1.21335 0.98889 0.92547 1.00326 1.20856 0.99912 0.93023 0.95459 1.21484 0.98142 1.01104 0.94783 1.21890 0.96935 0.97680 0.98737 1.21344 0.97989 0.96258 1.00053 1.21331 0.99189 0.98869 0.96043 1.20460 0.99794 0.97821 0.97202 1.20517 0.98932 0.94998 1.00641 1.22468 0.87254 0.88819 0.96814 0.93940 0.94612 0.93840 0.91526 0.93394 0.93663 0.92013 0.75410 0.74819 0.86753 0.86481 0.92799 0.93097 0.90031 0.91683 0.92764 0.92402 0.91706 0.92131 0.92019 0.91719 0.92119 0.91985 0.92343 0.92885 0.92758 0.94629 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.69 11.39 21.65 0.25 -55.44 16 2 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 3 Si 0.98 46.03 29.55 68.60 2.03 48.05 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.24 -13.70 10.70 84.03 0.90 -12.80 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 9 N -0.63 -33.21 3.55 -715.47 -2.54 -35.75 16 10 C 0.12 5.39 8.04 86.49 0.70 6.09 16 11 C 0.16 5.97 0.68 5.37 0.00 5.97 16 12 C -0.09 -3.60 4.67 30.59 0.14 -3.46 16 13 C 0.09 3.02 6.86 71.98 0.49 3.51 16 14 O -0.59 -18.57 13.66 -148.98 -2.03 -20.60 16 15 N -0.71 -19.67 4.52 -427.53 -1.93 -21.60 16 16 C 0.51 13.91 7.39 87.66 0.65 14.56 16 17 O -0.58 -21.27 14.16 -3.05 -0.04 -21.31 16 18 C -0.13 -2.23 5.51 29.85 0.16 -2.07 16 19 C -0.09 -1.74 3.86 30.59 0.12 -1.63 16 20 C -0.07 -1.02 1.86 -11.19 -0.02 -1.04 16 21 C -0.12 -1.50 4.76 30.13 0.14 -1.36 16 22 C -0.11 -1.24 5.85 31.32 0.18 -1.05 16 23 C -0.12 -1.22 5.31 30.14 0.16 -1.06 16 24 C -0.12 -1.27 5.60 30.20 0.17 -1.10 16 25 C -0.12 -1.37 5.26 28.74 0.15 -1.22 16 26 C -0.11 -1.62 4.69 28.74 0.13 -1.48 16 27 C 0.17 7.80 6.69 86.45 0.58 8.38 16 28 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 30 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 2.84 6.54 -2.39 -0.02 2.83 16 32 H 0.05 2.27 8.02 -2.39 -0.02 2.26 16 33 H 0.05 1.49 7.61 -2.38 -0.02 1.47 16 34 H 0.06 1.67 7.43 -2.39 -0.02 1.65 16 35 H 0.40 7.71 9.12 -74.06 -0.68 7.04 16 36 H 0.41 8.72 8.67 -92.71 -0.80 7.92 16 37 H 0.11 1.50 6.32 -2.39 -0.02 1.49 16 38 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.05 1.19 7.99 -2.39 -0.02 1.17 16 40 H 0.05 1.15 8.10 -2.38 -0.02 1.13 16 41 H 0.08 1.01 6.98 -2.39 -0.02 1.00 16 42 H 0.06 0.83 5.83 -2.39 -0.01 0.82 16 43 H 0.05 0.76 6.63 -2.39 -0.02 0.74 16 44 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 46 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.06 0.64 6.63 -2.39 -0.02 0.62 16 48 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.06 0.72 6.99 -2.38 -0.02 0.71 16 50 H 0.06 0.71 7.47 -2.39 -0.02 0.70 16 51 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.05 0.83 7.90 -2.39 -0.02 0.81 16 53 H 0.05 0.82 7.47 -2.38 -0.02 0.81 16 54 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 55 H 0.06 2.88 6.59 -2.39 -0.02 2.86 16 Total: -1.00 -73.06 413.06 0.26 -72.80 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: -0.60 Total: 26.50 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 5.13 Total: 7.35 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -4.22 Total: -112.80 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -2.08 Total: -41.91 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -73.06 0.26 -72.80 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755333813.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.009 kcal (2) G-P(sol) polarization free energy of solvation -73.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds