Wall clock time and date at job start Tue Mar 31 2020 23:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47079 * 2 1 4 4 C 1.52997 * 109.47280 * 300.57271 * 3 2 1 5 5 C 1.52998 * 109.47252 * 296.04530 * 4 3 2 6 6 C 1.53000 * 109.47028 * 60.56935 * 3 2 1 7 7 N 1.46504 * 109.46708 * 65.00006 * 6 3 2 8 8 C 1.46497 * 120.00309 * 270.00025 * 7 6 3 9 9 C 1.50707 * 109.46872 * 274.07966 * 8 7 6 10 10 H 1.07996 * 119.99903 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99871 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00013 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99777 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47232 * 59.99994 * 13 11 9 15 15 H 1.48500 * 109.46959 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47171 * 299.99570 * 13 11 9 17 17 C 1.34778 * 120.00134 * 90.00023 * 7 6 3 18 18 O 1.21290 * 119.99846 * 5.05178 * 17 7 6 19 19 C 1.50699 * 120.00151 * 185.05363 * 17 7 6 20 20 C 1.53047 * 109.45891 * 155.42467 * 19 17 7 21 21 C 1.53189 * 109.31217 * 181.38761 * 20 19 17 22 22 N 1.46931 * 108.77340 * 305.36395 * 21 20 19 23 23 C 1.34779 * 120.63212 * 233.58289 * 22 21 20 24 24 C 1.50693 * 120.00041 * 180.27616 * 23 22 21 25 25 O 1.21285 * 119.99908 * 0.02562 * 23 22 21 26 26 C 1.46927 * 118.73750 * 53.86335 * 22 21 20 27 27 C 1.53039 * 109.46184 * 275.49445 * 19 17 7 28 28 H 1.09006 * 109.46977 * 63.15996 * 1 2 3 29 29 H 1.08994 * 109.47272 * 183.16091 * 1 2 3 30 30 H 1.08993 * 109.47405 * 303.16551 * 1 2 3 31 31 H 1.09000 * 109.46845 * 240.00208 * 2 1 3 32 32 H 1.08998 * 109.46876 * 120.00381 * 2 1 3 33 33 H 1.08998 * 109.47025 * 180.57122 * 3 2 1 34 34 H 1.09001 * 109.47610 * 56.04417 * 4 3 2 35 35 H 1.09002 * 109.47459 * 176.04462 * 4 3 2 36 36 H 1.08996 * 109.47642 * 185.83414 * 5 4 3 37 37 H 1.08999 * 109.47387 * 305.83607 * 5 4 3 38 38 H 1.09007 * 109.47300 * 65.83746 * 5 4 3 39 39 H 1.08992 * 109.47403 * 305.00407 * 6 3 2 40 40 H 1.09000 * 109.47365 * 184.99322 * 6 3 2 41 41 H 1.09002 * 109.46975 * 34.06968 * 8 7 6 42 42 H 1.08994 * 109.47617 * 154.08111 * 8 7 6 43 43 H 0.97001 * 120.00117 * 179.97438 * 12 11 9 44 44 H 1.09001 * 109.45838 * 35.45505 * 19 17 7 45 45 H 1.09003 * 109.49219 * 61.43596 * 20 19 17 46 46 H 1.08995 * 109.52537 * 301.35729 * 20 19 17 47 47 H 1.08995 * 109.58455 * 185.58229 * 21 20 19 48 48 H 1.08996 * 109.70317 * 65.22254 * 21 20 19 49 49 H 1.08998 * 109.47281 * 179.72604 * 24 23 22 50 50 H 1.09000 * 109.47621 * 299.73126 * 24 23 22 51 51 H 1.09001 * 109.47313 * 59.72895 * 24 23 22 52 52 H 1.09007 * 109.58666 * 65.92295 * 26 22 21 53 53 H 1.09000 * 109.58396 * 186.34767 * 26 22 21 54 54 H 1.09005 * 109.49300 * 298.56750 * 27 19 17 55 55 H 1.08998 * 109.49546 * 58.65975 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5183 2.1679 -1.2419 5 6 2.0961 1.5106 -2.4969 6 6 1.5417 2.1596 1.2564 7 7 2.1371 1.5380 2.4419 8 6 1.4556 0.4235 3.1050 9 6 0.4542 0.9636 4.0933 10 1 0.3375 2.0303 4.2155 11 6 -0.3129 0.0959 4.8415 12 7 -0.1710 -1.2030 4.6923 13 14 -1.5536 0.7654 6.0670 14 1 -2.5514 1.6028 5.3539 15 1 -2.2453 -0.3643 6.7382 16 1 -0.8508 1.5898 7.0826 17 6 3.3118 1.9914 2.9225 18 8 3.8306 2.9711 2.4306 19 6 3.9806 1.2810 4.0710 20 6 5.4855 1.5570 4.0343 21 6 6.1665 0.8055 5.1825 22 7 5.5149 1.1801 6.4450 23 6 6.2412 1.6429 7.4817 24 6 5.5590 2.0170 8.7722 25 8 7.4445 1.7540 7.3775 26 6 4.0573 1.0346 6.5580 27 6 3.3992 1.7886 5.3926 28 1 -0.3633 0.4640 -0.9170 29 1 -0.3633 -1.0260 0.0567 30 1 -0.3634 0.5621 0.8602 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.1299 1.4425 -0.0102 34 1 0.4303 2.1071 -1.2681 35 1 1.8229 3.2139 -1.2066 36 1 1.8088 2.0888 -3.3750 37 1 3.1831 1.4786 -2.4227 38 1 1.7080 0.4960 -2.5872 39 1 0.4560 2.0825 1.3123 40 1 1.8297 3.2100 1.2136 41 1 0.9400 -0.1823 2.3597 42 1 2.1882 -0.1904 3.6288 43 1 -0.7104 -1.8135 5.2189 44 1 3.8059 0.2085 3.9858 45 1 5.6619 2.6270 4.1446 46 1 5.8952 1.2168 3.0833 47 1 7.2216 1.0764 5.2214 48 1 6.0706 -0.2689 5.0264 49 1 6.3031 2.3628 9.4897 50 1 4.8378 2.8125 8.5847 51 1 5.0424 1.1462 9.1759 52 1 3.7907 -0.0213 6.5106 53 1 3.7203 1.4565 7.5048 54 1 3.5953 2.8565 5.4899 55 1 2.3236 1.6129 5.4081 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104543637.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:01 Heat of formation + Delta-G solvation = -112.847604 kcal Electronic energy + Delta-G solvation = -32119.729149 eV Core-core repulsion = 28155.018024 eV Total energy + Delta-G solvation = -3964.711125 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.58725 -40.67641 -38.79921 -37.80492 -36.19534 -34.32520 -34.09792 -32.43713 -31.97497 -30.37340 -30.09509 -28.54318 -26.83960 -25.34816 -24.63988 -24.20547 -24.04529 -22.27077 -20.42771 -19.84929 -19.57903 -18.49363 -18.13270 -17.83798 -17.07651 -16.80961 -16.53405 -16.45295 -16.22440 -16.06624 -15.53210 -14.98690 -14.98193 -14.63784 -14.40887 -14.27316 -14.15010 -14.01948 -13.80871 -13.60043 -13.48040 -13.14784 -13.07766 -13.02789 -12.97562 -12.79075 -12.72467 -12.58344 -12.50416 -12.36655 -12.20084 -12.05450 -11.93233 -11.76051 -11.59568 -11.54224 -11.35101 -11.23500 -11.21652 -10.88671 -10.61217 -10.35966 -9.68595 -9.31827 -8.10219 -6.21494 1.46573 1.50848 1.55362 1.60106 1.79790 2.04881 2.35770 2.51779 3.19987 3.57725 3.69724 3.79561 3.90495 3.95372 3.97294 4.05316 4.10518 4.23659 4.33199 4.39826 4.44467 4.46225 4.52112 4.58663 4.61390 4.63674 4.70225 4.72501 4.77050 4.80790 4.84166 4.89394 4.93024 4.97577 4.99229 5.03351 5.09630 5.11306 5.16263 5.24271 5.27114 5.32995 5.36766 5.41577 5.45370 5.51276 5.56631 5.67961 5.77037 5.96245 6.18212 6.41779 6.67812 6.91342 7.13502 7.37982 7.51013 8.94088 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009019 B = 0.004438 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.953769 B = 6307.643466 C = 8704.782282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C -0.089 4.089 4 C -0.115 4.115 5 C -0.145 4.145 6 C 0.119 3.881 7 N -0.590 5.590 8 C 0.243 3.757 9 C -0.534 4.534 10 H 0.048 0.952 11 C 0.036 3.964 12 N -0.912 5.912 13 Si 0.938 3.062 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.265 1.265 17 C 0.513 3.487 18 O -0.601 6.601 19 C -0.094 4.094 20 C -0.102 4.102 21 C 0.115 3.885 22 N -0.611 5.611 23 C 0.505 3.495 24 C -0.169 4.169 25 O -0.601 6.601 26 C 0.116 3.884 27 C -0.125 4.125 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.041 0.959 42 H 0.031 0.969 43 H 0.266 0.734 44 H 0.096 0.904 45 H 0.054 0.946 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.094 0.906 50 H 0.104 0.896 51 H 0.111 0.889 52 H 0.081 0.919 53 H 0.115 0.885 54 H 0.054 0.946 55 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.084 1.059 -1.781 3.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.109 4.109 4 C -0.153 4.153 5 C -0.203 4.203 6 C -0.004 4.004 7 N -0.319 5.319 8 C 0.123 3.877 9 C -0.573 4.573 10 H 0.066 0.934 11 C -0.165 4.165 12 N -0.551 5.551 13 Si 0.765 3.235 14 H -0.208 1.208 15 H -0.212 1.212 16 H -0.189 1.189 17 C 0.302 3.698 18 O -0.484 6.484 19 C -0.115 4.115 20 C -0.141 4.141 21 C -0.008 4.008 22 N -0.343 5.343 23 C 0.296 3.704 24 C -0.228 4.228 25 O -0.483 6.483 26 C -0.006 4.006 27 C -0.163 4.163 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.114 0.886 45 H 0.073 0.927 46 H 0.095 0.905 47 H 0.102 0.898 48 H 0.101 0.899 49 H 0.113 0.887 50 H 0.123 0.877 51 H 0.130 0.870 52 H 0.100 0.900 53 H 0.133 0.867 54 H 0.073 0.927 55 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.854 1.415 -2.022 4.577 hybrid contribution -0.876 0.230 0.520 1.044 sum 2.979 1.645 -1.502 3.719 Atomic orbital electron populations 1.21813 0.95565 1.01352 1.01741 1.21534 0.96453 0.95674 1.01415 1.21438 0.99120 0.95889 0.94434 1.21516 1.01278 0.98930 0.93569 1.21744 1.00516 1.01114 0.96891 1.21479 0.98202 0.96304 0.84406 1.48199 1.20568 1.35071 1.28040 1.19393 0.91884 0.84124 0.92336 1.21489 1.21089 0.92712 1.21984 0.93358 1.25385 0.98078 0.94793 0.98259 1.69978 1.41223 1.02270 1.41603 0.85911 0.79776 0.77914 0.79903 1.20792 1.21239 1.18942 1.20896 0.81044 0.83793 0.84044 1.90566 1.66293 1.28611 1.62914 1.21184 0.95334 1.01129 0.93863 1.21628 0.93093 1.00650 0.98721 1.21560 0.97522 0.99458 0.82223 1.48356 1.08628 1.63874 1.13477 1.21571 0.86867 0.75336 0.86635 1.21979 1.02951 1.05001 0.92835 1.90656 1.16803 1.56599 1.84247 1.21954 0.77344 1.01554 0.99701 1.21986 1.02562 0.99366 0.92400 0.91161 0.93384 0.93639 0.90996 0.93470 0.93209 0.90788 0.92486 0.91616 0.93406 0.92091 0.90440 0.92499 0.94159 0.95076 0.92507 0.88641 0.92711 0.90541 0.89813 0.89937 0.88728 0.87746 0.87047 0.90043 0.86720 0.92691 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 8.52 71.98 0.61 -3.65 16 2 C -0.11 -3.33 4.86 30.59 0.15 -3.18 16 3 C -0.09 -2.69 2.38 -10.79 -0.03 -2.71 16 4 C -0.12 -2.79 5.16 30.59 0.16 -2.64 16 5 C -0.15 -2.96 9.49 71.98 0.68 -2.28 16 6 C 0.12 4.25 4.75 86.38 0.41 4.66 16 7 N -0.59 -23.17 2.28 -826.15 -1.88 -25.05 16 8 C 0.24 10.33 4.06 85.64 0.35 10.68 16 9 C -0.53 -24.71 7.29 25.60 0.19 -24.52 16 10 H 0.05 2.32 7.81 -2.91 -0.02 2.30 16 11 C 0.04 1.70 5.46 84.66 0.46 2.16 16 12 N -0.91 -45.29 13.29 21.45 0.28 -45.01 16 13 Si 0.94 38.03 29.54 68.60 2.03 40.05 16 14 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 15 H -0.29 -11.61 7.11 99.48 0.71 -10.90 16 16 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 17 C 0.51 20.39 6.78 87.66 0.59 20.98 16 18 O -0.60 -26.77 15.67 -3.06 -0.05 -26.81 16 19 C -0.09 -3.17 1.71 -11.51 -0.02 -3.19 16 20 C -0.10 -3.16 4.86 30.67 0.15 -3.01 16 21 C 0.12 3.18 6.43 86.36 0.56 3.74 16 22 N -0.61 -16.49 2.97 -818.07 -2.43 -18.92 16 23 C 0.50 14.01 7.81 87.65 0.68 14.69 16 24 C -0.17 -3.01 8.67 71.23 0.62 -2.40 16 25 O -0.60 -21.59 16.50 -3.04 -0.05 -21.64 16 26 C 0.12 2.92 6.37 86.51 0.55 3.47 16 27 C -0.12 -3.97 5.30 30.82 0.16 -3.80 16 28 H 0.07 1.69 6.50 -2.38 -0.02 1.67 16 29 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.04 1.54 5.56 -2.39 -0.01 1.52 16 31 H 0.07 1.84 6.69 -2.39 -0.02 1.82 16 32 H 0.05 1.62 5.76 -2.39 -0.01 1.60 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 1.69 6.28 -2.39 -0.01 1.67 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.18 6.85 -2.38 -0.02 1.16 16 39 H 0.08 2.80 6.06 -2.39 -0.01 2.78 16 40 H 0.06 2.15 7.36 -2.39 -0.02 2.13 16 41 H 0.04 1.80 4.60 -2.39 -0.01 1.79 16 42 H 0.03 1.38 5.68 -2.39 -0.01 1.37 16 43 H 0.27 12.75 8.31 -92.71 -0.77 11.98 16 44 H 0.10 3.24 6.23 -2.39 -0.01 3.23 16 45 H 0.05 1.90 7.92 -2.39 -0.02 1.88 16 46 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.08 2.47 7.00 -2.39 -0.02 2.45 16 48 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.09 1.61 8.12 -2.39 -0.02 1.59 16 50 H 0.10 1.58 7.70 -2.39 -0.02 1.56 16 51 H 0.11 1.50 7.93 -2.39 -0.02 1.48 16 52 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 53 H 0.11 2.23 5.94 -2.39 -0.01 2.22 16 54 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 55 H 0.10 3.54 5.60 -2.39 -0.01 3.53 16 Total: -1.00 -60.45 408.64 5.05 -55.39 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: 0.87 Total: 32.98 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 6.28 Total: 9.00 kcal Atomic # 7 Polarization: -84.95 SS G_CDS: -4.02 Total: -88.98 kcal Atomic # 8 Polarization: -48.35 SS G_CDS: -0.10 Total: -48.45 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.05 kcal Total: -60.45 5.05 -55.39 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104543637.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.455 kcal (2) G-P(sol) polarization free energy of solvation -60.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds