Wall clock time and date at job start Tue Mar 31 2020 23:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50694 * 109.47215 * 2 1 4 4 O 1.21281 * 120.00361 * 0.02562 * 3 2 1 5 5 N 1.34783 * 120.00263 * 180.02562 * 3 2 1 6 6 C 1.47425 * 125.64553 * 359.97438 * 5 3 2 7 7 C 1.54906 * 104.83034 * 155.90119 * 6 5 3 8 8 C 1.55164 * 101.58433 * 37.01153 * 7 6 5 9 9 H 1.08998 * 110.72124 * 83.03059 * 8 7 6 10 10 C 1.50692 * 110.72337 * 206.13492 * 8 7 6 11 11 O 1.21281 * 120.00502 * 93.65701 * 10 8 7 12 12 N 1.34780 * 119.99809 * 273.66049 * 10 8 7 13 13 C 1.46500 * 119.99985 * 4.88869 * 12 10 8 14 14 C 1.50692 * 109.47079 * 90.96414 * 13 12 10 15 15 H 1.07993 * 120.00759 * 359.97438 * 14 13 12 16 16 C 1.37886 * 119.99946 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99679 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00148 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46778 * 90.00672 * 18 16 14 20 20 H 1.48508 * 109.47015 * 209.99999 * 18 16 14 21 21 H 1.48499 * 109.47209 * 330.00205 * 18 16 14 22 22 C 1.46502 * 119.99955 * 184.88167 * 12 10 8 23 23 C 1.52993 * 109.47635 * 263.53092 * 22 12 10 24 24 C 1.53005 * 109.47107 * 64.62381 * 23 22 12 25 25 C 1.52998 * 109.47013 * 185.00182 * 24 23 22 26 26 C 1.52996 * 109.47491 * 184.62348 * 23 22 12 27 27 C 1.52999 * 109.47277 * 65.83449 * 26 23 22 28 28 C 1.47319 * 125.61424 * 180.19418 * 5 3 2 29 29 H 1.09002 * 109.47669 * 59.99691 * 1 2 3 30 30 H 1.09000 * 109.47317 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47099 * 299.99435 * 1 2 3 32 32 H 1.09005 * 109.46976 * 240.00393 * 2 1 3 33 33 H 1.09002 * 109.47669 * 120.00309 * 2 1 3 34 34 H 1.09001 * 110.36740 * 37.06458 * 6 5 3 35 35 H 1.08996 * 110.45999 * 274.78934 * 6 5 3 36 36 H 1.08998 * 111.00757 * 278.93475 * 7 6 5 37 37 H 1.09002 * 111.00307 * 155.08146 * 7 6 5 38 38 H 1.09005 * 109.46831 * 210.96419 * 13 12 10 39 39 H 1.08995 * 109.46628 * 330.96279 * 13 12 10 40 40 H 0.96993 * 119.99494 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.46985 * 143.53002 * 22 12 10 42 42 H 1.09002 * 109.46853 * 23.53331 * 22 12 10 43 43 H 1.09001 * 109.47346 * 304.62383 * 23 22 12 44 44 H 1.08996 * 109.47309 * 65.00006 * 24 23 22 45 45 H 1.09009 * 109.47087 * 304.99956 * 24 23 22 46 46 H 1.09010 * 109.46752 * 179.97438 * 25 24 23 47 47 H 1.09003 * 109.47370 * 60.00424 * 25 24 23 48 48 H 1.08998 * 109.47491 * 299.99794 * 25 24 23 49 49 H 1.09001 * 109.47632 * 185.83604 * 26 23 22 50 50 H 1.09001 * 109.47104 * 305.83657 * 26 23 22 51 51 H 1.09001 * 109.46656 * 301.13780 * 27 26 23 52 52 H 1.09003 * 109.47006 * 61.13504 * 27 26 23 53 53 H 1.08996 * 109.47493 * 181.13546 * 27 26 23 54 54 H 1.09003 * 110.06256 * 61.69059 * 28 5 3 55 55 H 1.08994 * 109.85465 * 300.42740 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.4210 0.6462 -0.0006 7 6 5.6534 1.3577 -0.6126 8 6 5.5101 2.7877 -0.0276 9 1 5.9267 2.8363 0.9785 10 6 6.1719 3.8003 -0.9262 11 8 5.5207 4.3806 -1.7688 12 7 7.4875 4.0610 -0.7935 13 6 8.2966 3.2849 0.1495 14 6 8.8831 2.0899 -0.5567 15 1 8.6738 1.9246 -1.6032 16 6 9.6870 1.2073 0.1332 17 7 9.9415 1.4082 1.4078 18 14 10.4135 -0.2744 -0.7421 19 1 11.7326 0.0892 -1.3191 20 1 10.5867 -1.3861 0.2273 21 1 9.4987 -0.7043 -1.8300 22 6 8.1086 5.1203 -1.5925 23 6 8.7606 4.5076 -2.8335 24 6 7.6803 3.8956 -3.7277 25 6 8.3405 3.1748 -4.9046 26 6 9.5070 5.5959 -3.6076 27 6 10.6791 6.1067 -2.7673 28 6 3.9819 3.0013 0.0035 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 4.1299 -0.2049 -0.6161 35 1 4.6372 0.3212 1.0171 36 1 5.5951 1.3732 -1.7010 37 1 6.5799 0.8903 -0.2792 38 1 9.1017 3.9093 0.5370 39 1 7.6692 2.9476 0.9745 40 1 10.5073 0.7876 1.8930 41 1 8.8672 5.6275 -0.9965 42 1 7.3474 5.8379 -1.8988 43 1 9.4629 3.7315 -2.5293 44 1 7.0298 4.6851 -4.1038 45 1 7.0908 3.1836 -3.1499 46 1 7.5708 2.7384 -5.5414 47 1 8.9910 2.3851 -4.5285 48 1 8.9299 3.8867 -5.4824 49 1 9.8836 5.1829 -4.5434 50 1 8.8271 6.4205 -3.8219 51 1 10.3043 6.5013 -1.8229 52 1 11.3693 5.2864 -2.5699 53 1 11.1988 6.8960 -3.3103 54 1 3.7016 3.5427 0.9071 55 1 3.6677 3.5598 -0.8782 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161708383.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:49 Heat of formation + Delta-G solvation = -112.642938 kcal Electronic energy + Delta-G solvation = -31962.417264 eV Core-core repulsion = 27997.715014 eV Total energy + Delta-G solvation = -3964.702250 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.61606 -40.58838 -38.61237 -37.68270 -36.21807 -34.32028 -33.87783 -32.65175 -32.56211 -30.23875 -29.76067 -28.55364 -26.50089 -25.15630 -24.80803 -23.65227 -23.44447 -22.75403 -20.66748 -20.13408 -19.71862 -18.48961 -18.48025 -18.14783 -17.16566 -16.86970 -16.45780 -16.32379 -15.99996 -15.57776 -15.37072 -15.17266 -14.96113 -14.61142 -14.44133 -14.27206 -14.16092 -13.97712 -13.81766 -13.55349 -13.48350 -13.13431 -13.04822 -12.96835 -12.82991 -12.74886 -12.67104 -12.56512 -12.50843 -12.34869 -12.22238 -12.14074 -12.04671 -11.90509 -11.77294 -11.67921 -11.22740 -11.21365 -11.16339 -10.92728 -10.68273 -10.41444 -9.70110 -9.34892 -8.09895 -6.19614 1.45082 1.50717 1.56656 1.60891 1.74921 1.90003 2.37376 2.51959 3.21610 3.41557 3.55995 3.74901 3.83765 3.92997 4.03000 4.11296 4.20105 4.20907 4.24794 4.30434 4.32275 4.41281 4.50298 4.57631 4.59228 4.63909 4.72487 4.75920 4.79271 4.84737 4.85453 4.94197 4.97477 5.00973 5.03190 5.07266 5.11016 5.13312 5.16368 5.18204 5.27629 5.29689 5.30561 5.36950 5.37224 5.48757 5.54244 5.68516 5.79811 5.93643 6.17634 6.50875 6.65108 6.92847 7.12006 7.35928 7.51643 8.96031 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010036 B = 0.003980 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.243330 B = 7033.462599 C = 8524.264517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.132 4.132 3 C 0.515 3.485 4 O -0.594 6.594 5 N -0.618 5.618 6 C 0.104 3.896 7 C -0.106 4.106 8 C -0.111 4.111 9 H 0.109 0.891 10 C 0.524 3.476 11 O -0.587 6.587 12 N -0.591 5.591 13 C 0.250 3.750 14 C -0.516 4.516 15 H 0.059 0.941 16 C 0.031 3.969 17 N -0.920 5.920 18 Si 0.938 3.062 19 H -0.285 1.285 20 H -0.286 1.286 21 H -0.266 1.266 22 C 0.123 3.877 23 C -0.097 4.097 24 C -0.100 4.100 25 C -0.145 4.145 26 C -0.111 4.111 27 C -0.151 4.151 28 C 0.125 3.875 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.015 0.985 39 H 0.034 0.966 40 H 0.264 0.736 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.048 0.952 45 H 0.035 0.965 46 H 0.052 0.948 47 H 0.043 0.957 48 H 0.069 0.931 49 H 0.072 0.928 50 H 0.064 0.936 51 H 0.051 0.949 52 H 0.045 0.955 53 H 0.067 0.933 54 H 0.064 0.936 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.477 -2.817 -4.280 7.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.171 4.171 3 C 0.306 3.694 4 O -0.475 6.475 5 N -0.352 5.352 6 C -0.017 4.017 7 C -0.145 4.145 8 C -0.132 4.132 9 H 0.127 0.873 10 C 0.313 3.687 11 O -0.470 6.470 12 N -0.319 5.319 13 C 0.130 3.870 14 C -0.555 4.555 15 H 0.077 0.923 16 C -0.169 4.169 17 N -0.560 5.560 18 Si 0.765 3.235 19 H -0.211 1.211 20 H -0.211 1.211 21 H -0.190 1.190 22 C 0.000 4.000 23 C -0.116 4.116 24 C -0.138 4.138 25 C -0.202 4.202 26 C -0.149 4.149 27 C -0.208 4.208 28 C 0.001 3.999 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.127 0.873 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.033 0.967 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.088 0.912 49 H 0.091 0.909 50 H 0.082 0.918 51 H 0.070 0.930 52 H 0.064 0.936 53 H 0.086 0.914 54 H 0.082 0.918 55 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.179 -2.126 -4.537 7.955 hybrid contribution 0.839 -0.424 -0.035 0.941 sum -5.340 -2.550 -4.572 7.478 Atomic orbital electron populations 1.21539 0.93069 1.02831 1.01825 1.21705 0.98309 0.90524 1.06567 1.21409 0.79795 0.93443 0.74740 1.90664 1.55552 1.48680 1.52645 1.48781 1.05823 1.07983 1.72569 1.22594 0.85018 0.91253 1.02865 1.22667 0.99756 0.92052 1.00010 1.22170 0.94007 0.96334 1.00732 0.87344 1.20285 0.82178 0.82471 0.83800 1.90596 1.64742 1.53764 1.37863 1.48142 1.07885 1.35130 1.40784 1.19176 0.89956 0.90087 0.87822 1.21508 1.29386 1.07958 0.96622 0.92316 1.25424 0.96532 0.99907 0.95080 1.70003 1.38448 1.38350 1.09156 0.85853 0.78911 0.80019 0.78701 1.21139 1.21148 1.19012 1.21530 0.96707 0.89294 0.92470 1.21528 0.97154 0.98343 0.94570 1.21325 0.97142 0.98946 0.96358 1.21779 1.00419 1.00266 0.97761 1.21528 0.97134 0.97465 0.98767 1.21798 0.97964 1.00963 1.00050 1.21679 0.90809 0.85699 1.01692 0.93730 0.89111 0.93444 0.86668 0.86297 0.87279 0.88880 0.91946 0.87890 0.96704 0.94802 0.92685 0.90623 0.91547 0.91413 0.93309 0.94622 0.92904 0.93742 0.91221 0.90921 0.91777 0.93021 0.93560 0.91357 0.91782 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 9.20 71.98 0.66 -1.80 16 2 C -0.13 -2.38 5.43 29.84 0.16 -2.22 16 3 C 0.51 15.06 7.85 87.65 0.69 15.75 16 4 O -0.59 -22.74 16.31 -3.03 -0.05 -22.79 16 5 N -0.62 -17.91 3.33 -811.03 -2.70 -20.61 16 6 C 0.10 2.42 6.69 86.85 0.58 3.00 16 7 C -0.11 -3.26 6.30 31.99 0.20 -3.06 16 8 C -0.11 -3.77 2.46 -10.35 -0.03 -3.80 16 9 H 0.11 3.68 6.36 -2.39 -0.02 3.66 16 10 C 0.52 20.48 5.63 87.65 0.49 20.98 16 11 O -0.59 -25.41 13.75 -3.03 -0.04 -25.45 16 12 N -0.59 -22.97 2.24 -826.18 -1.85 -24.82 16 13 C 0.25 10.75 5.07 85.63 0.43 11.19 16 14 C -0.52 -23.42 6.96 25.60 0.18 -23.24 16 15 H 0.06 2.74 7.23 -2.91 -0.02 2.71 16 16 C 0.03 1.45 5.46 84.66 0.46 1.92 16 17 N -0.92 -46.51 13.29 21.45 0.28 -46.23 16 18 Si 0.94 38.31 29.54 68.60 2.03 40.33 16 19 H -0.29 -11.83 7.11 99.48 0.71 -11.13 16 20 H -0.29 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 22 C 0.12 4.31 4.86 86.38 0.42 4.73 16 23 C -0.10 -3.16 1.87 -10.80 -0.02 -3.18 16 24 C -0.10 -3.37 4.53 30.60 0.14 -3.24 16 25 C -0.15 -4.14 9.67 71.98 0.70 -3.45 16 26 C -0.11 -2.89 5.27 30.59 0.16 -2.73 16 27 C -0.15 -3.70 9.71 71.98 0.70 -3.00 16 28 C 0.12 4.24 6.43 86.67 0.56 4.80 16 29 H 0.04 0.95 8.10 -2.39 -0.02 0.93 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 32 H 0.12 1.59 7.85 -2.38 -0.02 1.57 16 33 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.11 1.86 7.48 -2.39 -0.02 1.84 16 35 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.06 2.05 8.04 -2.39 -0.02 2.03 16 37 H 0.10 3.46 6.91 -2.39 -0.02 3.44 16 38 H 0.01 0.70 7.97 -2.38 -0.02 0.68 16 39 H 0.03 1.50 5.84 -2.39 -0.01 1.49 16 40 H 0.26 12.90 8.31 -92.71 -0.77 12.13 16 41 H 0.08 2.53 6.22 -2.39 -0.01 2.51 16 42 H 0.07 2.38 7.30 -2.39 -0.02 2.36 16 43 H 0.07 2.57 6.64 -2.39 -0.02 2.55 16 44 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.03 1.40 6.07 -2.38 -0.01 1.39 16 46 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 47 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.07 1.70 6.45 -2.39 -0.02 1.68 16 49 H 0.07 1.74 6.31 -2.39 -0.02 1.72 16 50 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 51 H 0.05 1.30 6.45 -2.39 -0.02 1.28 16 52 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 53 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 54 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 55 H 0.06 2.38 6.73 -2.39 -0.02 2.36 16 Total: -1.00 -61.33 418.94 5.01 -56.32 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.85 Total: 30.58 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 6.49 Total: 12.65 kcal Atomic # 7 Polarization: -87.39 SS G_CDS: -4.27 Total: -91.65 kcal Atomic # 8 Polarization: -48.14 SS G_CDS: -0.09 Total: -48.23 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.33 kcal Total: -61.33 5.01 -56.32 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161708383.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.320 kcal (2) G-P(sol) polarization free energy of solvation -61.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds