Wall clock time and date at job start Tue Mar 31 2020 23:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47181 * 2 1 4 4 C 1.52998 * 109.47527 * 174.07237 * 3 2 1 5 5 C 1.53001 * 109.47704 * 187.66738 * 4 3 2 6 6 C 1.53003 * 109.47148 * 294.06988 * 3 2 1 7 7 N 1.46501 * 109.47160 * 171.55753 * 6 3 2 8 8 C 1.46502 * 119.99812 * 306.45988 * 7 6 3 9 9 C 1.50698 * 109.47098 * 274.83566 * 8 7 6 10 10 H 1.07999 * 120.00513 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99505 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00189 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99743 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46880 * 90.00413 * 13 11 9 15 15 H 1.48497 * 109.47208 * 209.99961 * 13 11 9 16 16 H 1.48500 * 109.47183 * 330.00529 * 13 11 9 17 17 C 1.34773 * 119.99781 * 126.46524 * 7 6 3 18 18 O 1.21284 * 119.99654 * 186.57255 * 17 7 6 19 19 C 1.50700 * 120.00308 * 6.57033 * 17 7 6 20 20 H 1.09003 * 109.51865 * 51.47514 * 19 17 7 21 21 C 1.53043 * 109.49613 * 171.54916 * 19 17 7 22 22 C 1.53038 * 109.53521 * 181.31746 * 21 19 17 23 23 C 1.53197 * 109.31392 * 298.63680 * 22 21 19 24 24 N 1.46926 * 108.77379 * 54.63685 * 23 22 21 25 25 C 1.34778 * 120.62983 * 126.36781 * 24 23 22 26 26 C 1.50696 * 119.99896 * 354.95756 * 25 24 23 27 27 O 1.21278 * 119.99734 * 174.95200 * 25 24 23 28 28 C 1.46924 * 118.73621 * 306.64037 * 24 23 22 29 29 H 1.08998 * 109.47216 * 185.41190 * 1 2 3 30 30 H 1.09006 * 109.47295 * 305.40843 * 1 2 3 31 31 H 1.09004 * 109.47430 * 65.40799 * 1 2 3 32 32 H 1.08999 * 109.47056 * 240.00075 * 2 1 3 33 33 H 1.09003 * 109.47589 * 120.00071 * 2 1 3 34 34 H 1.08995 * 109.47276 * 54.06747 * 3 2 1 35 35 H 1.09010 * 109.46867 * 307.66742 * 4 3 2 36 36 H 1.09007 * 109.47042 * 67.66369 * 4 3 2 37 37 H 1.08994 * 109.47228 * 177.81202 * 5 4 3 38 38 H 1.08995 * 109.46693 * 297.81120 * 5 4 3 39 39 H 1.09000 * 109.47029 * 57.80864 * 5 4 3 40 40 H 1.08998 * 109.47008 * 51.55867 * 6 3 2 41 41 H 1.09001 * 109.47195 * 291.55836 * 6 3 2 42 42 H 1.09001 * 109.46938 * 34.83924 * 8 7 6 43 43 H 1.09003 * 109.46839 * 154.83906 * 8 7 6 44 44 H 0.96999 * 119.99832 * 179.97438 * 12 11 9 45 45 H 1.09006 * 109.45842 * 61.30302 * 21 19 17 46 46 H 1.08996 * 109.46416 * 301.33675 * 21 19 17 47 47 H 1.09003 * 109.50054 * 178.69086 * 22 21 19 48 48 H 1.08998 * 109.52881 * 58.60309 * 22 21 19 49 49 H 1.09000 * 109.58802 * 294.84990 * 23 22 21 50 50 H 1.08999 * 109.58574 * 174.42016 * 23 22 21 51 51 H 1.08999 * 109.47244 * 60.00048 * 26 25 24 52 52 H 1.09003 * 109.46720 * 179.97438 * 26 25 24 53 53 H 1.08995 * 109.47268 * 299.99699 * 26 25 24 54 54 H 1.09004 * 109.58265 * 173.14112 * 28 24 23 55 55 H 1.08993 * 109.59212 * 293.57171 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5627 1.4451 0.1490 5 6 4.0540 2.8814 0.3408 6 6 1.6553 2.1194 -1.3171 7 7 1.9624 3.5498 -1.2389 8 6 1.4378 4.3521 -0.1312 9 6 0.0450 4.8205 -0.4657 10 1 -0.4046 4.5475 -1.4089 11 6 -0.6556 5.5968 0.4330 12 7 -0.1083 5.9289 1.5818 13 14 -2.3817 6.1780 0.0180 14 1 -3.3691 5.1759 0.4936 15 1 -2.6388 7.4805 0.6833 16 1 -2.5095 6.3395 -1.4526 17 6 2.7276 4.1274 -2.1862 18 8 3.0809 5.2807 -2.0603 19 6 3.1441 3.3402 -3.4019 20 1 2.2658 2.8849 -3.8596 21 6 3.8185 4.2746 -4.4090 22 6 4.2125 3.4824 -5.6578 23 6 5.2116 2.3880 -5.2693 24 7 4.6259 1.5720 -4.1970 25 6 4.5437 0.2324 -4.3204 26 6 4.9496 -0.4317 -5.6108 27 8 4.1432 -0.4385 -3.3928 28 6 4.1260 2.2448 -2.9902 29 1 -0.3633 -1.0231 0.0969 30 1 -0.3634 0.5955 0.8376 31 1 -0.3634 0.4277 -0.9345 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5925 1.9861 0.8321 35 1 3.8440 0.8461 1.0152 36 1 4.0162 1.0227 -0.7478 37 1 5.1342 2.8795 0.4858 38 1 3.8068 3.4708 -0.5420 39 1 3.5707 3.3169 1.2154 40 1 0.5884 1.9862 -1.4960 41 1 2.2196 1.6708 -2.1346 42 1 1.4097 3.7465 0.7747 43 1 2.0829 5.2160 0.0291 44 1 -0.6012 6.4753 2.2138 45 1 4.7106 4.7104 -3.9591 46 1 3.1265 5.0696 -4.6867 47 1 4.6717 4.1529 -6.3842 48 1 3.3245 3.0257 -6.0948 49 1 6.1361 2.8455 -4.9169 50 1 5.4195 1.7591 -6.1349 51 1 5.9967 -0.2118 -5.8189 52 1 4.8157 -1.5098 -5.5222 53 1 4.3304 -0.0539 -6.4243 54 1 3.6179 1.5213 -2.3526 55 1 4.9600 2.6904 -2.4482 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171567900.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:45 Heat of formation + Delta-G solvation = -95.364871 kcal Electronic energy + Delta-G solvation = -33110.721728 eV Core-core repulsion = 29146.768711 eV Total energy + Delta-G solvation = -3963.953017 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.03547 -40.58842 -38.70874 -37.99326 -35.73653 -34.60715 -34.04531 -32.98914 -32.60747 -30.52117 -29.63778 -28.61520 -26.31146 -25.88686 -25.48306 -24.18795 -22.84369 -22.22573 -21.09298 -20.15696 -19.83208 -18.60513 -18.16328 -17.89405 -17.30462 -17.14430 -16.50784 -16.36974 -16.16883 -15.78726 -15.48776 -15.06872 -14.87325 -14.69934 -14.47720 -14.30782 -14.20729 -14.15706 -14.03983 -13.60299 -13.47025 -13.37545 -13.20394 -13.14904 -12.96041 -12.92638 -12.61326 -12.52312 -12.46306 -12.39789 -12.23358 -12.04347 -12.00739 -11.90504 -11.74141 -11.61422 -11.44117 -11.33322 -11.11195 -10.88716 -10.61743 -10.51050 -9.69573 -9.25425 -8.21651 -6.36627 1.34336 1.36598 1.46626 1.58342 1.74404 2.00597 2.29806 2.43058 3.07193 3.48742 3.53028 3.73226 3.76410 3.85084 3.89992 4.01827 4.07976 4.15116 4.17958 4.28941 4.34915 4.42277 4.48360 4.54353 4.58888 4.61332 4.62888 4.67683 4.73583 4.75191 4.83218 4.84567 4.90019 5.02669 5.05313 5.06732 5.11202 5.14224 5.16923 5.17929 5.19273 5.23328 5.27288 5.38713 5.41529 5.44612 5.48090 5.54767 5.62613 5.84105 6.07838 6.46727 6.69569 6.75782 7.18974 7.25934 7.42205 8.84668 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011818 B = 0.004313 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.721657 B = 6490.957856 C = 7616.692110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C -0.103 4.103 4 C -0.106 4.106 5 C -0.165 4.165 6 C 0.105 3.895 7 N -0.588 5.588 8 C 0.268 3.732 9 C -0.545 4.545 10 H 0.051 0.949 11 C 0.012 3.988 12 N -0.926 5.926 13 Si 0.964 3.036 14 H -0.266 1.266 15 H -0.281 1.281 16 H -0.272 1.272 17 C 0.507 3.493 18 O -0.589 6.589 19 C -0.112 4.112 20 H 0.098 0.902 21 C -0.100 4.100 22 C -0.125 4.125 23 C 0.100 3.900 24 N -0.611 5.611 25 C 0.502 3.498 26 C -0.165 4.165 27 O -0.590 6.590 28 C 0.111 3.889 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.030 0.970 40 H 0.061 0.939 41 H 0.100 0.900 42 H 0.025 0.975 43 H 0.000 1.000 44 H 0.266 0.734 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.106 0.894 48 H 0.075 0.925 49 H 0.079 0.921 50 H 0.129 0.871 51 H 0.114 0.886 52 H 0.089 0.911 53 H 0.113 0.887 54 H 0.106 0.894 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.123 -14.639 -16.859 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 C -0.122 4.122 4 C -0.143 4.143 5 C -0.222 4.222 6 C -0.017 4.017 7 N -0.318 5.318 8 C 0.147 3.853 9 C -0.584 4.584 10 H 0.070 0.930 11 C -0.188 4.188 12 N -0.565 5.565 13 Si 0.788 3.212 14 H -0.191 1.191 15 H -0.206 1.206 16 H -0.196 1.196 17 C 0.295 3.705 18 O -0.470 6.470 19 C -0.135 4.135 20 H 0.116 0.884 21 C -0.138 4.138 22 C -0.163 4.163 23 C -0.021 4.021 24 N -0.344 5.344 25 C 0.293 3.707 26 C -0.224 4.224 27 O -0.471 6.471 28 C -0.013 4.013 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.079 0.921 41 H 0.118 0.882 42 H 0.043 0.957 43 H 0.018 0.982 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.125 0.875 48 H 0.094 0.906 49 H 0.097 0.903 50 H 0.147 0.853 51 H 0.133 0.867 52 H 0.108 0.892 53 H 0.131 0.869 54 H 0.123 0.877 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.067 -14.310 -16.146 24.248 hybrid contribution -1.228 1.206 0.810 1.902 sum 9.839 -13.104 -15.337 22.444 Atomic orbital electron populations 1.21807 0.95781 1.01897 1.01445 1.21426 0.95895 0.94129 1.02841 1.21532 0.96323 0.96959 0.97370 1.21550 0.94455 0.96076 1.02259 1.22175 1.00022 0.97962 1.02074 1.22039 1.01077 0.79478 0.99145 1.48195 1.48410 1.09813 1.25356 1.18700 0.92219 0.89606 0.84810 1.21724 1.00852 1.32735 1.03040 0.93035 1.25793 1.02504 0.95773 0.94697 1.70058 1.39312 1.38070 1.09110 0.85476 0.79443 0.77964 0.78306 1.19094 1.20622 1.19645 1.20904 0.77977 0.87109 0.84479 1.90632 1.57365 1.20050 1.78933 1.21611 1.00566 0.97220 0.94077 0.88357 1.21345 1.00315 0.96906 0.95207 1.21942 1.00410 0.97721 0.96242 1.22147 0.95980 0.93464 0.90502 1.48295 1.60631 1.06566 1.18901 1.21771 0.76524 0.81282 0.91118 1.21979 1.05248 1.02035 0.93095 1.90705 1.48947 1.64007 1.43419 1.21775 0.96681 0.94308 0.88509 0.91051 0.94086 0.93095 0.91070 0.90793 0.92580 0.91022 0.91192 0.92746 0.92364 0.95028 0.92124 0.88211 0.95698 0.98232 0.92499 0.92000 0.92634 0.87536 0.90644 0.90282 0.85329 0.86736 0.89190 0.86869 0.87677 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.19 9.57 71.98 0.69 -3.50 16 2 C -0.11 -2.89 5.39 30.59 0.16 -2.72 16 3 C -0.10 -3.46 1.88 -10.79 -0.02 -3.48 16 4 C -0.11 -3.34 5.10 30.59 0.16 -3.18 16 5 C -0.16 -6.07 8.47 71.98 0.61 -5.46 16 6 C 0.10 3.76 4.72 86.38 0.41 4.17 16 7 N -0.59 -25.83 1.22 -826.14 -1.01 -26.84 16 8 C 0.27 14.67 3.72 85.63 0.32 14.99 16 9 C -0.54 -31.86 9.38 25.60 0.24 -31.62 16 10 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 11 C 0.01 0.67 5.46 84.66 0.46 1.13 16 12 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 13 Si 0.96 45.54 29.54 68.60 2.03 47.56 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 15 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 16 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 17 C 0.51 21.55 4.91 87.66 0.43 21.98 16 18 O -0.59 -30.30 15.46 -3.04 -0.05 -30.34 16 19 C -0.11 -3.41 1.83 -11.61 -0.02 -3.43 16 20 H 0.10 2.85 7.77 -2.39 -0.02 2.83 16 21 C -0.10 -2.53 4.48 30.62 0.14 -2.40 16 22 C -0.13 -1.75 6.08 30.67 0.19 -1.56 16 23 C 0.10 1.14 6.35 86.36 0.55 1.69 16 24 N -0.61 -11.84 2.98 -819.75 -2.44 -14.28 16 25 C 0.50 10.10 7.80 87.66 0.68 10.78 16 26 C -0.16 -1.46 8.67 71.23 0.62 -0.84 16 27 O -0.59 -17.40 16.52 -3.02 -0.05 -17.45 16 28 C 0.11 2.97 4.45 86.22 0.38 3.36 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.05 1.44 6.68 -2.38 -0.02 1.43 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 1.84 8.13 -2.39 -0.02 1.82 16 34 H 0.06 2.27 6.14 -2.39 -0.01 2.26 16 35 H 0.07 2.03 8.12 -2.38 -0.02 2.01 16 36 H 0.07 2.10 5.77 -2.38 -0.01 2.09 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 38 H 0.06 2.37 3.01 -2.39 -0.01 2.36 16 39 H 0.03 1.30 7.45 -2.39 -0.02 1.28 16 40 H 0.06 2.26 6.37 -2.39 -0.02 2.25 16 41 H 0.10 3.19 3.62 -2.39 -0.01 3.18 16 42 H 0.03 1.42 5.53 -2.39 -0.01 1.41 16 43 H 0.00 -0.03 7.21 -2.39 -0.02 -0.04 16 44 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 45 H 0.06 1.71 8.05 -2.38 -0.02 1.69 16 46 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 49 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.13 0.46 5.93 -2.39 -0.01 0.44 16 51 H 0.11 0.42 7.74 -2.39 -0.02 0.40 16 52 H 0.09 0.89 8.12 -2.39 -0.02 0.87 16 53 H 0.11 0.49 7.90 -2.39 -0.02 0.47 16 54 H 0.11 3.13 1.72 -2.38 0.00 3.12 16 55 H 0.06 1.79 8.03 -2.39 -0.02 1.77 16 Total: -1.00 -78.99 403.11 5.63 -73.35 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.88 Total: 24.59 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 5.99 Total: -0.09 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -3.17 Total: -97.62 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -0.10 Total: -47.79 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -78.99 5.63 -73.35 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171567900.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.011 kcal (2) G-P(sol) polarization free energy of solvation -78.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds