Wall clock time and date at job start Tue Mar 31 2020 23:07:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53005 * 109.47048 * 2 1
4 4 C 1.52997 * 109.46929 * 65.00299 * 3 2 1
5 5 C 1.53005 * 109.47329 * 185.80591 * 4 3 2
6 6 C 1.52995 * 109.47179 * 185.00094 * 3 2 1
7 7 N 1.46506 * 109.46975 * 63.06673 * 6 3 2
8 8 C 1.46490 * 120.00259 * 264.17075 * 7 6 3
9 9 C 1.50698 * 109.47393 * 266.09565 * 8 7 6
10 10 H 1.07988 * 120.00029 * 359.97438 * 9 8 7
11 11 C 1.37884 * 119.99742 * 180.02562 * 9 8 7
12 12 N 1.31520 * 119.99493 * 180.02562 * 11 9 8
13 13 Si 1.86795 * 120.00221 * 0.02562 * 11 9 8
14 14 H 1.48499 * 109.47295 * 89.99854 * 13 11 9
15 15 H 1.48504 * 109.46875 * 209.99784 * 13 11 9
16 16 H 1.48496 * 109.46910 * 329.99537 * 13 11 9
17 17 C 1.34780 * 119.99279 * 84.17331 * 7 6 3
18 18 O 1.21341 * 120.00606 * 5.03150 * 17 7 6
19 19 C 1.49453 * 119.99538 * 185.02597 * 17 7 6
20 20 O 1.21346 * 120.00088 * 273.45180 * 19 17 7
21 21 N 1.34777 * 119.99747 * 93.44770 * 19 17 7
22 22 C 1.46928 * 120.63133 * 354.73264 * 21 19 17
23 23 C 1.53619 * 108.54832 * 126.36699 * 22 21 19
24 24 C 1.53041 * 109.24418 * 54.84696 * 23 22 21
25 25 C 1.52997 * 109.44935 * 178.49791 * 24 23 22
26 26 C 1.53039 * 109.53994 * 298.51748 * 24 23 22
27 27 C 1.46922 * 120.62880 * 175.00077 * 21 19 17
28 28 H 1.08999 * 109.47352 * 179.97438 * 1 2 3
29 29 H 1.08999 * 109.46891 * 299.99983 * 1 2 3
30 30 H 1.08999 * 109.47208 * 59.99136 * 1 2 3
31 31 H 1.09002 * 109.46996 * 240.00537 * 2 1 3
32 32 H 1.08993 * 109.47400 * 120.00173 * 2 1 3
33 33 H 1.08996 * 109.47537 * 305.00392 * 3 2 1
34 34 H 1.09003 * 109.47383 * 305.81218 * 4 3 2
35 35 H 1.09008 * 109.47227 * 65.80644 * 4 3 2
36 36 H 1.08992 * 109.47082 * 303.99256 * 5 4 3
37 37 H 1.09002 * 109.46503 * 63.98957 * 5 4 3
38 38 H 1.08998 * 109.47226 * 183.98908 * 5 4 3
39 39 H 1.08998 * 109.47189 * 303.07276 * 6 3 2
40 40 H 1.08998 * 109.47572 * 183.07186 * 6 3 2
41 41 H 1.09007 * 109.47200 * 26.09678 * 8 7 6
42 42 H 1.09003 * 109.47145 * 146.09145 * 8 7 6
43 43 H 0.97000 * 119.99718 * 180.02562 * 12 11 9
44 44 H 1.09000 * 109.57982 * 246.19846 * 22 21 19
45 45 H 1.09002 * 109.58469 * 6.61471 * 22 21 19
46 46 H 1.09008 * 109.62809 * 294.86227 * 23 22 21
47 47 H 1.08989 * 109.43315 * 174.72328 * 23 22 21
48 48 H 1.09001 * 109.45516 * 58.53649 * 24 23 22
49 49 H 1.08996 * 109.47273 * 180.02562 * 25 24 23
50 50 H 1.08994 * 109.47495 * 300.06631 * 25 24 23
51 51 H 1.09000 * 109.46987 * 60.06594 * 25 24 23
52 52 H 1.08996 * 109.49516 * 301.40927 * 26 24 23
53 53 H 1.09005 * 109.49515 * 181.30930 * 26 24 23
54 54 H 1.09001 * 109.58961 * 353.37873 * 27 21 19
55 55 H 1.08998 * 109.58514 * 113.66305 * 27 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 1.6353 2.1265 1.3074
5 6 2.0173 3.6069 1.2480
6 6 3.5648 1.4444 -0.1257
7 7 3.9495 0.8554 -1.4108
8 6 4.3118 -0.5619 -1.4879
9 6 5.8060 -0.7064 -1.3562
10 1 6.4240 0.1699 -1.2284
11 6 6.3841 -1.9574 -1.4000
12 7 7.6882 -2.0835 -1.2846
13 14 5.3153 -3.4730 -1.6232
14 1 5.1656 -3.7643 -3.0717
15 1 5.9530 -4.6321 -0.9485
16 1 3.9777 -3.2275 -1.0268
17 6 3.9702 1.6177 -2.5222
18 8 3.7594 2.8101 -2.4441
19 6 4.2528 0.9942 -3.8507
20 8 5.3989 0.8569 -4.2250
21 7 3.2347 0.5844 -4.6330
22 6 1.8490 0.6375 -4.1472
23 6 1.0039 1.4180 -5.1653
24 6 1.1612 0.7789 -6.5469
25 6 0.2919 1.5298 -7.5575
26 6 2.6269 0.8524 -6.9810
27 6 3.4899 0.0706 -5.9856
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5140 -0.8899
31 1 1.8933 -0.5138 -0.8901
32 1 1.8934 -0.5138 0.8899
33 1 1.6054 1.9816 -0.8417
34 1 0.5582 2.0344 1.4474
35 1 2.1519 1.6511 2.1413
36 1 3.0827 3.6991 1.0375
37 1 1.4472 4.0978 0.4592
38 1 1.7938 4.0784 2.2050
39 1 3.9970 0.8593 0.6860
40 1 3.9327 2.4690 -0.0709
41 1 3.8215 -1.1066 -0.6809
42 1 3.9906 -0.9674 -2.4473
43 1 8.0949 -2.9636 -1.3157
44 1 1.4590 -0.3751 -4.0442
45 1 1.8194 1.1426 -3.1817
46 1 1.3407 2.4540 -5.2032
47 1 -0.0439 1.3863 -4.8669
48 1 0.8475 -0.2640 -6.5024
49 1 0.4033 1.0747 -8.5416
50 1 -0.7520 1.4776 -7.2485
51 1 0.6057 2.5727 -7.6026
52 1 2.9483 1.8937 -7.0019
53 1 2.7341 0.4179 -7.9750
54 1 4.5432 0.2017 -6.2336
55 1 3.2332 -0.9878 -6.0288
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000338831303.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:07:57
Heat of formation + Delta-G solvation = -113.885160 kcal
Electronic energy + Delta-G solvation = -32717.572658 eV
Core-core repulsion = 28752.816541 eV
Total energy + Delta-G solvation = -3964.756117 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.24 seconds
Orbital eigenvalues (eV)
-42.07241 -40.26385 -38.79566 -38.23412 -36.39432 -35.01389 -34.50411 -32.61850
-32.23029 -30.60189 -29.66755 -28.85012 -26.48081 -25.06716 -24.53179 -24.39098
-23.44661 -22.78887 -21.20688 -20.78405 -19.76261 -19.16414 -18.73167 -18.02611
-17.65254 -16.55050 -16.32019 -16.02575 -15.80364 -15.52212 -15.44487 -15.28734
-15.06763 -14.93750 -14.76982 -14.54956 -14.36171 -14.30733 -14.20237 -14.01320
-13.64726 -13.55286 -13.08202 -12.88020 -12.81976 -12.75220 -12.66694 -12.63148
-12.49836 -12.26707 -12.23430 -12.11251 -11.98420 -11.87570 -11.76178 -11.47094
-11.39823 -11.34365 -11.32811 -11.21040 -10.83920 -10.55920 -9.83621 -9.63149
-8.33185 -6.41161 1.08987 1.14090 1.31343 1.35137 1.43876 1.57132
2.29458 2.38944 2.99983 3.18749 3.70475 3.81188 3.83489 3.84464
3.91743 4.02883 4.04957 4.25561 4.32316 4.38213 4.42199 4.46106
4.47925 4.56551 4.59884 4.66150 4.68503 4.75755 4.77358 4.80458
4.83051 4.88421 4.92903 4.93452 4.98089 5.06547 5.07691 5.13321
5.16878 5.18412 5.30230 5.31529 5.36346 5.37952 5.38401 5.44909
5.46256 5.52947 5.59056 5.62497 6.01874 6.03895 6.30405 6.62205
6.79462 6.81696 7.22211 8.84706
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.007416 B = 0.005828 C = 0.004074
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3774.577477 B = 4802.993591 C = 6870.772017
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.126 4.126
3 C -0.090 4.090
4 C -0.109 4.109
5 C -0.154 4.154
6 C 0.113 3.887
7 N -0.567 5.567
8 C 0.223 3.777
9 C -0.541 4.541
10 H 0.018 0.982
11 C 0.015 3.985
12 N -0.944 5.944
13 Si 0.940 3.060
14 H -0.270 1.270
15 H -0.278 1.278
16 H -0.223 1.223
17 C 0.518 3.482
18 O -0.560 6.560
19 C 0.513 3.487
20 O -0.548 6.548
21 N -0.595 5.595
22 C 0.099 3.901
23 C -0.121 4.121
24 C -0.089 4.089
25 C -0.141 4.141
26 C -0.121 4.121
27 C 0.103 3.897
28 H 0.059 0.941
29 H 0.067 0.933
30 H 0.055 0.945
31 H 0.050 0.950
32 H 0.065 0.935
33 H 0.064 0.936
34 H 0.088 0.912
35 H 0.068 0.932
36 H 0.038 0.962
37 H 0.050 0.950
38 H 0.068 0.932
39 H 0.083 0.917
40 H 0.066 0.934
41 H 0.069 0.931
42 H 0.028 0.972
43 H 0.268 0.732
44 H 0.098 0.902
45 H 0.069 0.931
46 H 0.052 0.948
47 H 0.103 0.897
48 H 0.089 0.911
49 H 0.064 0.936
50 H 0.067 0.933
51 H 0.046 0.954
52 H 0.051 0.949
53 H 0.099 0.901
54 H 0.066 0.934
55 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.971 2.433 -4.424 24.497
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.163 4.163
3 C -0.109 4.109
4 C -0.147 4.147
5 C -0.212 4.212
6 C -0.009 4.009
7 N -0.297 5.297
8 C 0.102 3.898
9 C -0.579 4.579
10 H 0.037 0.963
11 C -0.184 4.184
12 N -0.583 5.583
13 Si 0.761 3.239
14 H -0.195 1.195
15 H -0.203 1.203
16 H -0.146 1.146
17 C 0.301 3.699
18 O -0.440 6.440
19 C 0.296 3.704
20 O -0.424 6.424
21 N -0.330 5.330
22 C -0.022 4.022
23 C -0.159 4.159
24 C -0.107 4.107
25 C -0.198 4.198
26 C -0.159 4.159
27 C -0.019 4.019
28 H 0.078 0.922
29 H 0.086 0.914
30 H 0.074 0.926
31 H 0.069 0.931
32 H 0.083 0.917
33 H 0.082 0.918
34 H 0.106 0.894
35 H 0.087 0.913
36 H 0.057 0.943
37 H 0.069 0.931
38 H 0.087 0.913
39 H 0.101 0.899
40 H 0.084 0.916
41 H 0.087 0.913
42 H 0.046 0.954
43 H 0.077 0.923
44 H 0.116 0.884
45 H 0.087 0.913
46 H 0.070 0.930
47 H 0.122 0.878
48 H 0.107 0.893
49 H 0.083 0.917
50 H 0.086 0.914
51 H 0.065 0.935
52 H 0.070 0.930
53 H 0.118 0.882
54 H 0.084 0.916
55 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -23.325 2.848 -4.547 23.934
hybrid contribution 1.340 -0.380 -0.066 1.394
sum -21.985 2.468 -4.614 22.599
Atomic orbital electron populations
1.21760 0.93824 1.02094 1.02386 1.21670 0.97484 0.95212 1.01955
1.21503 0.92653 0.97352 0.99440 1.21534 1.02473 0.94970 0.95741
1.21826 1.00780 0.96632 1.01938 1.21830 0.96578 0.98791 0.83671
1.47983 1.62794 1.11474 1.07472 1.19702 0.94184 0.77785 0.98155
1.21444 0.92052 0.93262 1.51165 0.96315 1.25885 0.96276 1.02617
0.93594 1.70079 1.12170 1.25002 1.51040 0.85840 0.80689 0.78014
0.79336 1.19479 1.20286 1.14588 1.20140 0.77007 0.86794 0.85988
1.90671 1.51756 1.14788 1.86806 1.20438 0.85682 0.78066 0.86259
1.90787 1.22420 1.55201 1.74027 1.48205 1.07057 1.61819 1.15889
1.22168 0.79293 1.02658 0.98099 1.22038 1.00638 0.98717 0.94555
1.21146 0.94103 1.01178 0.94313 1.21766 0.99618 0.99766 0.98650
1.21969 0.95152 1.00022 0.98713 1.21868 1.01046 0.98972 0.79988
0.92157 0.91446 0.92583 0.93087 0.91664 0.91790 0.89362 0.91350
0.94317 0.93111 0.91327 0.89893 0.91610 0.91344 0.95427 0.92294
0.88405 0.91258 0.92954 0.87819 0.89265 0.91665 0.91351 0.93467
0.92998 0.88243 0.91570 0.89223
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.41 9.68 71.98 0.70 -1.71 16
2 C -0.13 -2.91 4.70 30.60 0.14 -2.76 16
3 C -0.09 -2.32 2.02 -10.79 -0.02 -2.34 16
4 C -0.11 -2.23 5.27 30.59 0.16 -2.07 16
5 C -0.15 -3.36 9.77 71.98 0.70 -2.66 16
6 C 0.11 3.94 4.67 86.38 0.40 4.35 16
7 N -0.57 -23.71 2.14 -827.75 -1.77 -25.49 16
8 C 0.22 10.08 2.93 85.63 0.25 10.33 16
9 C -0.54 -31.50 9.91 25.60 0.25 -31.24 16
10 H 0.02 1.28 8.06 -2.92 -0.02 1.25 16
11 C 0.01 0.86 5.47 84.66 0.46 1.32 16
12 N -0.94 -60.06 13.96 21.45 0.30 -59.76 16
13 Si 0.94 41.64 27.47 68.60 1.88 43.52 16
14 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16
15 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16
16 H -0.22 -8.37 6.54 99.48 0.65 -7.72 16
17 C 0.52 23.18 5.38 87.27 0.47 23.65 16
18 O -0.56 -26.26 16.74 -3.22 -0.05 -26.32 16
19 C 0.51 23.01 5.67 87.27 0.49 23.51 16
20 O -0.55 -29.92 16.53 -3.24 -0.05 -29.97 16
21 N -0.59 -19.73 2.97 -819.65 -2.43 -22.17 16
22 C 0.10 2.43 6.38 86.51 0.55 2.98 16
23 C -0.12 -2.23 5.38 30.82 0.17 -2.07 16
24 C -0.09 -1.38 2.68 -10.77 -0.03 -1.41 16
25 C -0.14 -1.72 9.19 71.98 0.66 -1.06 16
26 C -0.12 -2.40 5.36 30.67 0.16 -2.24 16
27 C 0.10 2.85 6.42 86.36 0.55 3.40 16
28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
29 H 0.07 0.97 6.45 -2.39 -0.02 0.95 16
30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16
31 H 0.05 1.35 6.01 -2.39 -0.01 1.33 16
32 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16
33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16
34 H 0.09 1.43 6.31 -2.39 -0.02 1.41 16
35 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16
36 H 0.04 1.00 6.36 -2.39 -0.02 0.98 16
37 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16
38 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16
39 H 0.08 2.89 8.03 -2.39 -0.02 2.87 16
40 H 0.07 2.47 5.77 -2.39 -0.01 2.46 16
41 H 0.07 2.78 5.84 -2.38 -0.01 2.77 16
42 H 0.03 1.24 6.36 -2.39 -0.02 1.23 16
43 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16
44 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16
45 H 0.07 1.91 6.31 -2.39 -0.02 1.89 16
46 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16
47 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16
48 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16
49 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16
50 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16
51 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16
52 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16
53 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16
54 H 0.07 2.23 7.04 -2.39 -0.02 2.21 16
55 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16
Total: -1.00 -79.74 420.70 4.74 -75.00
By element:
Atomic # 1 Polarization: 24.41 SS G_CDS: 0.79 Total: 25.19 kcal
Atomic # 6 Polarization: 13.90 SS G_CDS: 6.09 Total: 19.99 kcal
Atomic # 7 Polarization: -103.50 SS G_CDS: -3.91 Total: -107.41 kcal
Atomic # 8 Polarization: -56.18 SS G_CDS: -0.11 Total: -56.29 kcal
Atomic # 14 Polarization: 41.64 SS G_CDS: 1.88 Total: 43.52 kcal
Total: -79.74 4.74 -75.00 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000338831303.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.889 kcal
(2) G-P(sol) polarization free energy of solvation -79.740 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.630 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.996 kcal
(6) G-S(sol) free energy of system = (1) + (5) -113.885 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.24 seconds