Wall clock time and date at job start Tue Mar 31 2020 23:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47252 * 2 1 4 4 C 1.52995 * 109.46962 * 156.52475 * 3 2 1 5 5 C 1.53001 * 109.46981 * 188.74796 * 4 3 2 6 6 C 1.52994 * 109.47045 * 276.52916 * 3 2 1 7 7 N 1.46504 * 109.47250 * 306.51066 * 6 3 2 8 8 C 1.46501 * 119.99820 * 282.93356 * 7 6 3 9 9 C 1.50699 * 109.47125 * 107.17254 * 8 7 6 10 10 H 1.08008 * 119.99947 * 1.28945 * 9 8 7 11 11 C 1.37879 * 120.00039 * 181.28988 * 9 8 7 12 12 N 1.31516 * 120.00010 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00000 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47140 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.47143 * 119.99927 * 13 11 9 16 16 H 1.48498 * 109.47079 * 240.00074 * 13 11 9 17 17 C 1.34770 * 119.99917 * 102.93442 * 7 6 3 18 18 O 1.21288 * 119.99768 * 185.49353 * 17 7 6 19 19 C 1.50696 * 120.00488 * 5.48737 * 17 7 6 20 20 H 1.09001 * 109.63154 * 308.80973 * 19 17 7 21 21 C 1.53054 * 109.63754 * 188.40515 * 19 17 7 22 22 C 1.51790 * 110.74657 * 155.38529 * 21 19 17 23 23 C 1.51779 * 113.81039 * 66.80586 * 22 21 19 24 24 C 1.52989 * 110.88416 * 292.99914 * 23 22 21 25 25 N 1.47197 * 108.66300 * 86.46562 * 24 23 22 26 26 C 1.46501 * 119.78303 * 108.04135 * 25 24 23 27 27 C 1.33367 * 120.42675 * 288.04414 * 25 24 23 28 28 O 1.21285 * 119.88989 * 180.28400 * 27 25 24 29 29 H 1.09004 * 109.47301 * 176.80089 * 1 2 3 30 30 H 1.08998 * 109.46730 * 296.80445 * 1 2 3 31 31 H 1.09003 * 109.46830 * 56.80533 * 1 2 3 32 32 H 1.09004 * 109.47058 * 240.00153 * 2 1 3 33 33 H 1.09002 * 109.46876 * 120.00105 * 2 1 3 34 34 H 1.09002 * 109.46694 * 36.52482 * 3 2 1 35 35 H 1.09001 * 109.47429 * 308.74651 * 4 3 2 36 36 H 1.09002 * 109.46902 * 68.75079 * 4 3 2 37 37 H 1.09001 * 109.47226 * 180.02562 * 5 4 3 38 38 H 1.09001 * 109.46921 * 300.00166 * 5 4 3 39 39 H 1.08998 * 109.47361 * 59.99972 * 5 4 3 40 40 H 1.08995 * 109.47421 * 66.51256 * 6 3 2 41 41 H 1.09006 * 109.47108 * 186.50961 * 6 3 2 42 42 H 1.08993 * 109.46971 * 227.17190 * 8 7 6 43 43 H 1.09004 * 109.47276 * 347.17449 * 8 7 6 44 44 H 0.96996 * 119.99675 * 180.02562 * 12 11 9 45 45 H 1.08996 * 109.22737 * 275.70960 * 21 19 17 46 46 H 1.08997 * 109.22166 * 35.06109 * 21 19 17 47 47 H 1.08996 * 108.61934 * 187.93180 * 22 21 19 48 48 H 1.09006 * 108.61446 * 305.68962 * 22 21 19 49 49 H 1.08995 * 109.19331 * 53.36382 * 23 22 21 50 50 H 1.09005 * 109.19680 * 172.68511 * 23 22 21 51 51 H 1.09001 * 109.60325 * 206.21904 * 24 23 22 52 52 H 1.09001 * 109.60429 * 326.71287 * 24 23 22 53 53 H 1.08998 * 109.47301 * 90.00543 * 26 25 24 54 54 H 1.09003 * 109.46895 * 210.00109 * 26 25 24 55 55 H 1.08996 * 109.47262 * 329.99837 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.4575 1.4822 0.5746 5 6 3.8847 2.9372 0.7781 6 6 2.0554 1.9779 -1.4331 7 7 2.8126 1.0611 -2.2889 8 6 4.2770 1.0617 -2.2479 9 6 4.7603 -0.1794 -1.5427 10 1 4.0485 -0.9070 -1.1814 11 6 6.1110 -0.3860 -1.3586 12 7 6.9777 0.5003 -1.7980 13 14 6.7100 -1.9240 -0.4838 14 1 5.5441 -2.7552 -0.0898 15 1 7.5866 -2.7022 -1.3954 16 1 7.4753 -1.5375 0.7286 17 6 2.1619 0.2172 -3.1140 18 8 2.7825 -0.6096 -3.7483 19 6 0.6632 0.3006 -3.2484 20 1 0.2054 0.2841 -2.2593 21 6 0.1537 -0.8853 -4.0709 22 6 -1.2966 -1.1861 -3.7393 23 6 -2.2618 -0.0953 -4.1664 24 6 -2.0364 1.1811 -3.3537 25 7 -0.9852 1.9768 -4.0083 26 6 -1.3392 3.2128 -4.7108 27 6 0.2873 1.5799 -3.9662 28 8 1.1463 2.2457 -4.5045 29 1 -0.3634 -1.0261 -0.0574 30 1 -0.3633 0.4634 0.9172 31 1 -0.3633 0.5627 -0.8600 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.3825 2.0603 0.6117 35 1 3.4764 0.9608 1.5316 36 1 4.1441 0.9954 -0.1180 37 1 4.8947 2.9655 1.1870 38 1 3.8658 3.4586 -0.1790 39 1 3.1981 3.4240 1.4706 40 1 1.0330 2.0584 -1.8019 41 1 2.5256 2.9613 -1.4485 42 1 4.6689 1.0776 -3.2648 43 1 4.6251 1.9438 -1.7104 44 1 7.9279 0.3547 -1.6688 45 1 0.2377 -0.6489 -5.1316 46 1 0.7617 -1.7627 -3.8502 47 1 -1.5810 -2.1153 -4.2331 48 1 -1.3853 -1.3269 -2.6620 49 1 -2.1119 0.1219 -5.2239 50 1 -3.2841 -0.4412 -4.0131 51 1 -2.9606 1.7577 -3.3146 52 1 -1.7220 0.9205 -2.3431 53 1 -1.2896 4.0520 -4.0170 54 1 -0.6403 3.3775 -5.5308 55 1 -2.3510 3.1284 -5.1072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602094815.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:38 Heat of formation + Delta-G solvation = -96.456451 kcal Electronic energy + Delta-G solvation = -33843.579648 eV Core-core repulsion = 29879.579296 eV Total energy + Delta-G solvation = -3964.000351 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.25929 -40.38219 -38.45661 -37.80967 -35.77815 -35.24566 -34.45534 -33.08267 -32.19734 -30.16606 -29.36609 -28.27163 -26.84746 -25.85352 -25.27756 -24.38695 -22.68822 -21.72891 -21.34454 -20.62286 -19.18237 -18.91706 -18.44901 -17.86436 -17.40000 -16.78291 -16.54439 -16.38962 -16.04515 -15.51715 -15.35483 -15.10255 -14.84520 -14.78906 -14.53865 -14.43682 -14.16088 -13.98373 -13.88279 -13.81210 -13.49149 -13.35902 -13.21391 -13.08809 -12.92143 -12.79123 -12.70367 -12.56432 -12.49135 -12.23679 -12.15128 -11.94737 -11.81444 -11.65949 -11.58884 -11.50649 -11.36516 -11.14900 -10.94257 -10.86019 -10.57818 -10.53334 -9.72954 -9.32065 -8.16704 -6.21948 1.34388 1.37357 1.48022 1.48634 1.59125 2.15811 2.32989 2.45732 3.11430 3.37278 3.55125 3.65948 3.76744 3.92673 3.97428 4.07804 4.09501 4.17208 4.29707 4.38221 4.45782 4.45865 4.54192 4.59640 4.64652 4.68930 4.70530 4.73724 4.78118 4.81008 4.90596 4.95374 5.01245 5.03243 5.07446 5.10897 5.14362 5.20108 5.24276 5.25259 5.29350 5.34649 5.40658 5.45179 5.54723 5.57207 5.59302 5.71880 5.90006 6.03591 6.22579 6.25599 6.73331 6.85493 7.07505 7.33466 7.51587 8.91037 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013729 B = 0.004495 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.996911 B = 6227.580056 C = 6531.803565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C -0.086 4.086 4 C -0.174 4.174 5 C -0.136 4.136 6 C 0.115 3.885 7 N -0.585 5.585 8 C 0.270 3.730 9 C -0.493 4.493 10 H 0.054 0.946 11 C 0.008 3.992 12 N -0.928 5.928 13 Si 0.954 3.046 14 H -0.267 1.267 15 H -0.286 1.286 16 H -0.271 1.271 17 C 0.520 3.480 18 O -0.585 6.585 19 C -0.132 4.132 20 H 0.151 0.849 21 C -0.096 4.096 22 C -0.118 4.118 23 C -0.136 4.136 24 C 0.095 3.905 25 N -0.602 5.602 26 C 0.079 3.921 27 C 0.521 3.479 28 O -0.584 6.584 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.037 0.963 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.051 0.949 36 H 0.104 0.896 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.063 0.937 42 H -0.031 1.031 43 H 0.033 0.967 44 H 0.264 0.736 45 H 0.044 0.956 46 H 0.065 0.935 47 H 0.082 0.918 48 H 0.084 0.916 49 H 0.058 0.942 50 H 0.116 0.884 51 H 0.129 0.871 52 H 0.087 0.913 53 H 0.066 0.934 54 H 0.047 0.953 55 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.149 2.947 3.728 27.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C -0.105 4.105 4 C -0.211 4.211 5 C -0.194 4.194 6 C -0.007 4.007 7 N -0.315 5.315 8 C 0.149 3.851 9 C -0.532 4.532 10 H 0.072 0.928 11 C -0.190 4.190 12 N -0.569 5.569 13 Si 0.779 3.221 14 H -0.191 1.191 15 H -0.213 1.213 16 H -0.196 1.196 17 C 0.308 3.692 18 O -0.466 6.466 19 C -0.156 4.156 20 H 0.168 0.832 21 C -0.135 4.135 22 C -0.156 4.156 23 C -0.174 4.174 24 C -0.026 4.026 25 N -0.334 5.334 26 C -0.062 4.062 27 C 0.308 3.692 28 O -0.464 6.464 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.069 0.931 36 H 0.122 0.878 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.082 0.918 42 H -0.013 1.013 43 H 0.051 0.949 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.083 0.917 47 H 0.101 0.899 48 H 0.102 0.898 49 H 0.076 0.924 50 H 0.134 0.866 51 H 0.148 0.852 52 H 0.105 0.895 53 H 0.085 0.915 54 H 0.066 0.934 55 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -26.218 2.945 3.120 26.567 hybrid contribution 1.766 -0.613 -0.160 1.877 sum -24.452 2.332 2.959 24.741 Atomic orbital electron populations 1.21991 0.93514 1.02581 1.02469 1.21665 0.97378 0.96205 1.01404 1.21500 0.97214 0.97098 0.94660 1.22413 0.98895 0.97607 1.02170 1.21665 1.00378 0.96790 1.00533 1.21753 0.95540 0.92547 0.90903 1.47950 1.07564 1.36638 1.39319 1.18771 0.75384 0.97068 0.93829 1.21309 0.91651 1.05369 1.34868 0.92753 1.25709 0.96921 0.99419 0.96975 1.70065 1.02223 1.36754 1.47808 0.85560 0.78360 0.79802 0.78355 1.19105 1.21265 1.19588 1.20369 0.89750 0.80296 0.78804 1.90629 1.69842 1.38129 1.47978 1.22075 0.93056 0.96149 1.04284 0.83182 1.21134 0.98731 0.95459 0.98145 1.21219 0.90787 1.00207 1.03351 1.21840 1.01163 0.94333 1.00099 1.22396 0.91210 0.92555 0.96421 1.47847 1.06150 1.25548 1.53889 1.21856 1.02324 0.85118 0.96941 1.20032 0.83307 0.85595 0.80232 1.90768 1.50432 1.57221 1.48000 0.91486 0.90273 0.92343 0.94440 0.92369 0.88071 0.93050 0.87800 0.94521 0.94365 0.91239 0.90341 0.91833 1.01258 0.94886 0.92737 0.93676 0.91678 0.89922 0.89776 0.92369 0.86600 0.85249 0.89502 0.91533 0.93384 0.87195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.01 71.98 0.65 -2.12 16 2 C -0.13 -3.82 5.03 30.60 0.15 -3.67 16 3 C -0.09 -2.62 2.16 -10.80 -0.02 -2.64 16 4 C -0.17 -6.47 4.91 30.59 0.15 -6.32 16 5 C -0.14 -4.59 9.44 71.98 0.68 -3.91 16 6 C 0.12 4.09 4.83 86.38 0.42 4.50 16 7 N -0.59 -27.11 1.92 -826.16 -1.58 -28.69 16 8 C 0.27 15.36 4.22 85.63 0.36 15.72 16 9 C -0.49 -28.68 6.00 25.60 0.15 -28.53 16 10 H 0.05 3.19 7.10 -2.91 -0.02 3.17 16 11 C 0.01 0.48 5.46 84.65 0.46 0.94 16 12 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 13 Si 0.95 46.51 29.54 68.60 2.03 48.54 16 14 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 15 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 16 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 17 C 0.52 24.23 4.36 87.66 0.38 24.61 16 18 O -0.59 -33.40 15.15 -3.06 -0.05 -33.45 16 19 C -0.13 -4.28 1.26 -12.04 -0.02 -4.29 16 20 H 0.15 3.83 1.93 -2.39 0.00 3.83 16 21 C -0.10 -2.78 4.72 30.21 0.14 -2.64 16 22 C -0.12 -1.87 5.27 29.80 0.16 -1.72 16 23 C -0.14 -1.42 5.73 30.19 0.17 -1.25 16 24 C 0.09 0.97 5.88 86.24 0.51 1.48 16 25 N -0.60 -12.18 2.86 -846.07 -2.42 -14.60 16 26 C 0.08 1.31 10.35 127.77 1.32 2.63 16 27 C 0.52 16.71 4.99 88.11 0.44 17.15 16 28 O -0.58 -25.28 15.60 -3.04 -0.05 -25.32 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 0.95 3.98 -2.39 -0.01 0.94 16 32 H 0.04 1.41 4.62 -2.39 -0.01 1.40 16 33 H 0.06 1.76 7.78 -2.39 -0.02 1.74 16 34 H 0.10 2.36 7.92 -2.39 -0.02 2.34 16 35 H 0.05 1.80 7.92 -2.39 -0.02 1.78 16 36 H 0.10 4.92 2.54 -2.39 -0.01 4.92 16 37 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.04 1.35 6.21 -2.39 -0.01 1.34 16 39 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.08 2.37 4.52 -2.39 -0.01 2.36 16 41 H 0.06 2.33 6.42 -2.38 -0.02 2.31 16 42 H -0.03 -2.06 8.04 -2.39 -0.02 -2.08 16 43 H 0.03 1.90 6.42 -2.38 -0.02 1.88 16 44 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 45 H 0.04 1.46 7.86 -2.39 -0.02 1.44 16 46 H 0.06 2.21 7.29 -2.39 -0.02 2.20 16 47 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.08 1.05 7.88 -2.38 -0.02 1.03 16 49 H 0.06 0.80 8.05 -2.39 -0.02 0.79 16 50 H 0.12 0.44 8.14 -2.38 -0.02 0.42 16 51 H 0.13 0.36 7.92 -2.39 -0.02 0.34 16 52 H 0.09 0.79 5.65 -2.39 -0.01 0.77 16 53 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 54 H 0.05 1.10 7.38 -2.39 -0.02 1.08 16 55 H 0.11 0.90 8.03 -2.39 -0.02 0.89 16 Total: -1.00 -86.11 394.03 5.22 -80.90 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.89 Total: 19.83 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 6.11 Total: 9.96 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -3.71 Total: -100.45 kcal Atomic # 8 Polarization: -58.68 SS G_CDS: -0.09 Total: -58.77 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -86.11 5.22 -80.90 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602094815.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.561 kcal (2) G-P(sol) polarization free energy of solvation -86.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds