Wall clock time and date at job start Tue Mar 31 2020 23:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47721 * 2 1 4 4 C 1.53007 * 109.47016 * 304.89218 * 3 2 1 5 5 C 1.53007 * 109.46559 * 296.29959 * 4 3 2 6 6 C 1.53008 * 109.47230 * 64.88616 * 3 2 1 7 7 N 1.46894 * 109.46717 * 90.80324 * 6 3 2 8 8 C 1.46897 * 111.00208 * 287.56584 * 7 6 3 9 9 C 1.50695 * 109.47390 * 302.77337 * 8 7 6 10 10 H 1.07999 * 119.99893 * 3.94170 * 9 8 7 11 11 C 1.37881 * 120.00227 * 183.93471 * 9 8 7 12 12 N 1.31509 * 119.99977 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99856 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47344 * 89.99562 * 13 11 9 15 15 H 1.48498 * 109.47066 * 209.99820 * 13 11 9 16 16 H 1.48499 * 109.47072 * 329.99633 * 13 11 9 17 17 C 1.46909 * 110.99882 * 163.61454 * 7 6 3 18 18 N 1.46499 * 109.46835 * 278.20790 * 17 7 6 19 19 C 1.47105 * 124.34644 * 277.48607 * 18 17 7 20 20 C 1.53224 * 105.07423 * 164.16239 * 19 18 17 21 21 C 1.53403 * 111.68134 * 144.44977 * 20 19 18 22 22 C 1.55315 * 101.70675 * 102.48127 * 21 20 19 23 23 O 1.44518 * 103.68299 * 35.86269 * 22 21 20 24 24 C 1.44166 * 107.05124 * 320.82388 * 23 22 21 25 25 C 1.53200 * 103.26142 * 24.21604 * 20 19 18 26 26 C 1.34595 * 124.34545 * 97.79126 * 18 17 7 27 27 O 1.21278 * 124.94510 * 0.32097 * 26 18 17 28 28 H 1.09003 * 109.47134 * 65.90013 * 1 2 3 29 29 H 1.09000 * 109.47527 * 185.90235 * 1 2 3 30 30 H 1.09007 * 109.46780 * 305.90651 * 1 2 3 31 31 H 1.09004 * 109.46859 * 239.99497 * 2 1 3 32 32 H 1.09003 * 109.47150 * 120.00207 * 2 1 3 33 33 H 1.09000 * 109.47641 * 184.89038 * 3 2 1 34 34 H 1.08995 * 109.47152 * 56.29347 * 4 3 2 35 35 H 1.08997 * 109.47427 * 176.30197 * 4 3 2 36 36 H 1.08998 * 109.47107 * 305.53803 * 5 4 3 37 37 H 1.09001 * 109.46863 * 65.54048 * 5 4 3 38 38 H 1.09002 * 109.46620 * 185.53617 * 5 4 3 39 39 H 1.08995 * 109.46963 * 330.80460 * 6 3 2 40 40 H 1.08996 * 109.47080 * 210.80525 * 6 3 2 41 41 H 1.09003 * 109.47087 * 62.77354 * 8 7 6 42 42 H 1.08997 * 109.47285 * 182.77028 * 8 7 6 43 43 H 0.96998 * 119.99641 * 180.02562 * 12 11 9 44 44 H 1.09002 * 109.46659 * 38.20816 * 17 7 6 45 45 H 1.08995 * 109.47026 * 158.20510 * 17 7 6 46 46 H 1.09005 * 110.30809 * 283.21339 * 19 18 17 47 47 H 1.09006 * 110.30843 * 45.37531 * 19 18 17 48 48 H 1.08997 * 110.97735 * 220.58549 * 21 20 19 49 49 H 1.08995 * 110.97790 * 344.37603 * 21 20 19 50 50 H 1.09004 * 110.58128 * 277.31078 * 22 21 20 51 51 H 1.08996 * 110.70758 * 154.47185 * 22 21 20 52 52 H 1.08998 * 110.00681 * 266.81545 * 24 23 22 53 53 H 1.08999 * 110.03899 * 145.47671 * 24 23 22 54 54 H 1.09002 * 110.54398 * 217.87839 * 25 20 19 55 55 H 1.08994 * 110.54745 * 95.07294 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4322 2.1983 -1.1832 5 6 1.9138 1.5691 -2.4921 6 6 1.6330 2.1274 1.3062 7 7 2.6935 1.9448 2.3060 8 6 2.7264 0.5588 2.7915 9 6 1.3803 0.1945 3.3626 10 1 0.5621 0.8973 3.3073 11 6 1.1931 -1.0361 3.9556 12 7 0.0182 -1.3542 4.4535 13 14 2.6084 -2.2516 4.0517 14 1 3.3617 -2.0355 5.3131 15 1 2.0739 -3.6368 4.0254 16 1 3.5147 -2.0486 2.8930 17 6 2.5351 2.8892 3.4201 18 7 3.1005 4.1873 3.0439 19 6 4.5295 4.5259 3.1282 20 6 4.6908 5.7885 2.2752 21 6 5.7340 6.7440 2.8686 22 6 6.9601 6.4803 1.9525 23 8 6.3725 6.2520 0.6521 24 6 5.1733 5.4792 0.8599 25 6 3.2871 6.4021 2.2866 26 6 2.3783 5.2251 2.5824 27 8 1.1757 5.2195 2.4257 28 1 -0.3633 0.4196 -0.9381 29 1 -0.3634 -1.0222 0.1057 30 1 -0.3633 0.6027 0.8325 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.1266 1.4436 -0.0876 34 1 0.3450 2.1410 -1.1311 35 1 1.7432 3.2423 -1.1460 36 1 3.0033 1.5372 -2.5005 37 1 1.5200 0.5561 -2.5747 38 1 1.5612 2.1657 -3.3334 39 1 0.7067 1.6863 1.6743 40 1 1.4822 3.1918 1.1266 41 1 2.9634 -0.1104 1.9644 42 1 3.4876 0.4630 3.5658 43 1 -0.1133 -2.2198 4.8710 44 1 1.4758 3.0068 3.6488 45 1 3.0560 2.5065 4.2977 46 1 4.8105 4.7263 4.1622 47 1 5.1349 3.7160 2.7210 48 1 5.4037 7.7798 2.7902 49 1 5.9569 6.4843 3.9035 50 1 7.5056 5.5978 2.2869 51 1 7.6174 7.3495 1.9287 52 1 5.3937 4.4160 0.7651 53 1 4.4124 5.7682 0.1349 54 1 3.0502 6.8334 1.3140 55 1 3.2052 7.1552 3.0703 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756853629.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:54 Heat of formation + Delta-G solvation = -95.436165 kcal Electronic energy + Delta-G solvation = -32521.422450 eV Core-core repulsion = 28557.466342 eV Total energy + Delta-G solvation = -3963.956108 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.07387 -40.06616 -39.38458 -37.31124 -36.58129 -34.63121 -33.51156 -31.93421 -30.93160 -30.09381 -29.08727 -28.70353 -26.78178 -25.50165 -25.21906 -23.96588 -23.55974 -21.90107 -20.92523 -20.56323 -19.91110 -18.95484 -17.70672 -17.46735 -17.17540 -16.87494 -16.52180 -16.39381 -16.13170 -15.88414 -15.80454 -15.55420 -15.18347 -14.77461 -14.56436 -14.45316 -14.31503 -13.89362 -13.79501 -13.64830 -13.46277 -13.34341 -13.27977 -13.02545 -12.79148 -12.75857 -12.67058 -12.54061 -12.27794 -12.22306 -12.16398 -11.97428 -11.80406 -11.73231 -11.64721 -11.58427 -11.25568 -11.15485 -10.97043 -10.78354 -10.69935 -10.56213 -9.84288 -9.03068 -8.25241 -6.29154 1.35604 1.38797 1.48484 1.54583 2.04403 2.35893 3.00706 3.11078 3.20921 3.30822 3.34910 3.51845 3.93330 3.97700 4.03141 4.09507 4.13850 4.20608 4.33444 4.46096 4.49704 4.51844 4.53702 4.58100 4.62554 4.66549 4.67966 4.71441 4.76808 4.82392 4.85376 4.91064 4.92181 4.96123 4.98006 4.99014 5.03533 5.11525 5.12618 5.15818 5.18960 5.23798 5.32280 5.38086 5.44859 5.48331 5.58587 5.71289 5.74316 5.94480 6.11937 6.14259 6.37722 6.39257 6.77030 7.17282 7.36657 8.91130 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.004117 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.010829 B = 6799.733177 C = 7861.544309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C -0.066 4.066 4 C -0.114 4.114 5 C -0.142 4.142 6 C 0.068 3.932 7 N -0.532 5.532 8 C 0.163 3.837 9 C -0.531 4.531 10 H 0.029 0.971 11 C 0.020 3.980 12 N -0.947 5.947 13 Si 0.936 3.064 14 H -0.267 1.267 15 H -0.292 1.292 16 H -0.241 1.241 17 C 0.303 3.697 18 N -0.604 5.604 19 C 0.117 3.883 20 C -0.097 4.097 21 C -0.129 4.129 22 C 0.039 3.961 23 O -0.400 6.400 24 C 0.065 3.935 25 C -0.125 4.125 26 C 0.501 3.499 27 O -0.587 6.587 28 H 0.064 0.936 29 H 0.037 0.963 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.026 0.974 40 H 0.046 0.954 41 H 0.047 0.953 42 H 0.031 0.969 43 H 0.263 0.737 44 H 0.023 0.977 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.086 0.914 48 H 0.097 0.903 49 H 0.108 0.892 50 H 0.069 0.931 51 H 0.109 0.891 52 H 0.062 0.938 53 H 0.081 0.919 54 H 0.109 0.891 55 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.044 14.542 -6.711 22.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.158 4.158 3 C -0.085 4.085 4 C -0.152 4.152 5 C -0.199 4.199 6 C -0.060 4.060 7 N -0.257 5.257 8 C 0.035 3.965 9 C -0.570 4.570 10 H 0.047 0.953 11 C -0.178 4.178 12 N -0.587 5.587 13 Si 0.760 3.240 14 H -0.192 1.192 15 H -0.218 1.218 16 H -0.165 1.165 17 C 0.091 3.909 18 N -0.337 5.337 19 C -0.004 4.004 20 C -0.098 4.098 21 C -0.166 4.166 22 C -0.037 4.037 23 O -0.319 6.319 24 C -0.012 4.012 25 C -0.165 4.165 26 C 0.290 3.710 27 O -0.467 6.467 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.072 0.928 44 H 0.041 0.959 45 H 0.109 0.891 46 H 0.117 0.883 47 H 0.104 0.896 48 H 0.116 0.884 49 H 0.127 0.873 50 H 0.087 0.913 51 H 0.127 0.873 52 H 0.080 0.920 53 H 0.099 0.901 54 H 0.127 0.873 55 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.858 14.495 -7.102 22.628 hybrid contribution -1.434 -1.369 1.148 2.291 sum 14.424 13.126 -5.953 20.391 Atomic orbital electron populations 1.21672 0.96945 1.00211 1.00474 1.21701 0.95542 0.96794 1.01731 1.21028 1.00024 0.94455 0.92970 1.21551 1.00174 0.98635 0.94792 1.21725 1.01347 1.00855 0.95981 1.22135 0.93198 0.98126 0.92575 1.62307 1.45567 1.04993 1.12801 1.20216 0.94427 0.86274 0.95537 1.21693 0.97268 1.00941 1.37092 0.95319 1.25751 0.97735 0.99937 0.94419 1.70087 1.25179 1.22866 1.40587 0.85883 0.80070 0.77896 0.80163 1.19232 1.21807 1.16468 1.21382 0.95972 0.80767 0.92759 1.48674 1.09683 1.11574 1.63773 1.22348 0.80239 0.96652 1.01192 1.21862 0.95731 0.95868 0.96291 1.23063 0.92850 0.99705 1.01018 1.23856 0.95817 1.02294 0.81686 1.88953 1.39144 1.74086 1.29751 1.23054 0.87264 0.95985 0.94862 1.22326 0.92222 0.95832 1.06106 1.21851 0.87613 0.86280 0.75238 1.90705 1.16392 1.84169 1.55473 0.91710 0.94415 0.95252 0.91147 0.92291 0.90828 0.92849 0.92910 0.92319 0.92536 0.91926 0.95564 0.93514 0.93505 0.95068 0.92846 0.95866 0.89065 0.88329 0.89557 0.88444 0.87316 0.91267 0.87272 0.91997 0.90118 0.87309 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.16 9.11 71.98 0.66 -4.50 16 2 C -0.12 -4.34 5.08 30.59 0.16 -4.19 16 3 C -0.07 -2.25 2.04 -10.79 -0.02 -2.27 16 4 C -0.11 -3.32 4.92 30.60 0.15 -3.17 16 5 C -0.14 -3.31 9.50 71.98 0.68 -2.62 16 6 C 0.07 2.76 4.35 86.31 0.38 3.14 16 7 N -0.53 -20.89 4.69 -913.18 -4.28 -25.17 16 8 C 0.16 7.14 3.54 85.56 0.30 7.45 16 9 C -0.53 -28.50 7.71 25.60 0.20 -28.30 16 10 H 0.03 1.80 6.37 -2.91 -0.02 1.78 16 11 C 0.02 1.09 5.47 84.66 0.46 1.56 16 12 N -0.95 -57.89 13.96 21.45 0.30 -57.59 16 13 Si 0.94 42.01 27.39 68.60 1.88 43.89 16 14 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 15 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 16 H -0.24 -9.89 6.66 99.48 0.66 -9.23 16 17 C 0.30 11.54 5.16 170.80 0.88 12.42 16 18 N -0.60 -17.92 3.14 -829.91 -2.60 -20.52 16 19 C 0.12 2.27 6.53 86.34 0.56 2.84 16 20 C -0.10 -1.53 0.85 -52.01 -0.04 -1.58 16 21 C -0.13 -1.22 6.23 31.52 0.20 -1.02 16 22 C 0.04 0.45 7.74 72.78 0.56 1.02 16 23 O -0.40 -7.68 11.55 -148.98 -1.72 -9.40 16 24 C 0.07 1.23 7.11 71.88 0.51 1.74 16 25 C -0.13 -2.42 5.91 30.21 0.18 -2.24 16 26 C 0.50 15.77 7.36 87.98 0.65 16.42 16 27 O -0.59 -24.76 16.53 -3.02 -0.05 -24.81 16 28 H 0.06 2.08 6.62 -2.39 -0.02 2.07 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.03 1.30 6.08 -2.38 -0.01 1.29 16 31 H 0.07 2.17 6.91 -2.38 -0.02 2.15 16 32 H 0.06 2.49 4.46 -2.39 -0.01 2.48 16 33 H 0.07 2.45 8.03 -2.39 -0.02 2.43 16 34 H 0.05 1.65 6.27 -2.39 -0.01 1.64 16 35 H 0.05 1.53 8.03 -2.39 -0.02 1.51 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.31 6.93 -2.39 -0.02 1.29 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.03 1.30 3.55 -2.39 -0.01 1.29 16 40 H 0.05 1.98 5.81 -2.39 -0.01 1.96 16 41 H 0.05 2.06 4.67 -2.39 -0.01 2.05 16 42 H 0.03 1.32 7.10 -2.39 -0.02 1.30 16 43 H 0.26 15.18 8.31 -92.71 -0.77 14.40 16 44 H 0.02 1.09 7.28 -2.39 -0.02 1.08 16 45 H 0.09 3.30 7.68 -2.39 -0.02 3.28 16 46 H 0.10 1.45 7.50 -2.38 -0.02 1.43 16 47 H 0.09 1.73 7.46 -2.38 -0.02 1.71 16 48 H 0.10 0.74 7.88 -2.39 -0.02 0.72 16 49 H 0.11 0.64 7.46 -2.39 -0.02 0.62 16 50 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 51 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.06 1.29 7.37 -2.39 -0.02 1.27 16 53 H 0.08 1.61 7.36 -2.39 -0.02 1.59 16 54 H 0.11 2.02 7.47 -2.39 -0.02 2.00 16 55 H 0.13 1.89 7.86 -2.39 -0.02 1.87 16 Total: -1.00 -71.66 401.88 0.81 -70.84 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.83 Total: 26.09 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 6.46 Total: -3.32 kcal Atomic # 7 Polarization: -96.70 SS G_CDS: -6.59 Total: -103.28 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -1.77 Total: -34.21 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.88 Total: 43.89 kcal Total: -71.66 0.81 -70.84 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756853629.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.593 kcal (2) G-P(sol) polarization free energy of solvation -71.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds