Wall clock time and date at job start Tue Mar 31 2020 23:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46864 * 2 1 4 4 C 1.52998 * 109.47266 * 65.00310 * 3 2 1 5 5 C 1.53001 * 109.47169 * 184.99717 * 4 3 2 6 6 C 1.53007 * 109.46900 * 185.00051 * 3 2 1 7 7 N 1.46505 * 109.47204 * 65.82442 * 6 3 2 8 8 C 1.46498 * 119.99734 * 84.48746 * 7 6 3 9 9 C 1.50697 * 109.47408 * 271.87359 * 8 7 6 10 10 H 1.07998 * 120.00235 * 355.11920 * 9 8 7 11 11 C 1.37882 * 119.99816 * 175.40323 * 9 8 7 12 12 N 1.31516 * 119.99687 * 179.72242 * 11 9 8 13 13 Si 1.86799 * 120.00289 * 359.71762 * 11 9 8 14 14 H 1.48499 * 109.46890 * 90.00089 * 13 11 9 15 15 H 1.48498 * 109.47197 * 210.00372 * 13 11 9 16 16 H 1.48499 * 109.46867 * 330.00416 * 13 11 9 17 17 C 1.34774 * 120.00039 * 264.49555 * 7 6 3 18 18 O 1.21273 * 120.00186 * 359.97438 * 17 7 6 19 19 C 1.50700 * 119.99810 * 180.02562 * 17 7 6 20 20 C 1.53937 * 113.73004 * 278.75971 * 19 17 7 21 21 N 1.48188 * 86.10276 * 221.95594 * 20 19 17 22 22 C 1.46897 * 111.06914 * 137.52014 * 21 20 19 23 23 H 1.08999 * 110.45880 * 312.96356 * 22 21 20 24 24 C 1.54505 * 110.51247 * 75.57125 * 22 21 20 25 25 C 1.54476 * 104.06271 * 118.64356 * 24 22 21 26 26 O 1.44417 * 104.80881 * 23.97784 * 25 24 22 27 27 C 1.44430 * 105.27400 * 319.49055 * 26 25 24 28 28 C 1.47968 * 90.79491 * 24.60171 * 21 20 19 29 29 H 1.08999 * 109.46868 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47328 * 299.99920 * 1 2 3 31 31 H 1.08997 * 109.47378 * 60.00265 * 1 2 3 32 32 H 1.09001 * 109.46806 * 239.99617 * 2 1 3 33 33 H 1.08998 * 109.46957 * 120.00385 * 2 1 3 34 34 H 1.09005 * 109.47181 * 304.99592 * 3 2 1 35 35 H 1.09000 * 109.46885 * 304.99448 * 4 3 2 36 36 H 1.08994 * 109.47188 * 64.99653 * 4 3 2 37 37 H 1.09000 * 109.47352 * 182.58684 * 5 4 3 38 38 H 1.09003 * 109.47092 * 302.58809 * 5 4 3 39 39 H 1.08998 * 109.47320 * 62.58445 * 5 4 3 40 40 H 1.09001 * 109.46983 * 305.82694 * 6 3 2 41 41 H 1.08997 * 109.46904 * 185.82908 * 6 3 2 42 42 H 1.09001 * 109.47123 * 151.86774 * 8 7 6 43 43 H 1.09005 * 109.47147 * 31.86991 * 8 7 6 44 44 H 0.97002 * 119.99874 * 179.97438 * 12 11 9 45 45 H 1.08998 * 112.94176 * 50.32258 * 19 17 7 46 46 H 1.08995 * 113.76287 * 336.23962 * 20 19 17 47 47 H 1.09007 * 113.76042 * 107.60348 * 20 19 17 48 48 H 1.08999 * 110.51385 * 237.28679 * 24 22 21 49 49 H 1.09001 * 110.51167 * 359.97438 * 24 22 21 50 50 H 1.09011 * 110.37409 * 142.81515 * 25 24 22 51 51 H 1.09005 * 110.37132 * 265.14523 * 25 24 22 52 52 H 1.08991 * 110.37087 * 281.67934 * 27 26 25 53 53 H 1.09004 * 110.36919 * 159.33755 * 27 26 25 54 54 H 1.08999 * 113.75498 * 221.08559 * 28 21 20 55 55 H 1.08998 * 113.76016 * 89.71942 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3073 5 6 2.0354 3.6024 1.2559 6 6 3.5649 1.4443 -0.1257 7 7 3.9473 0.9161 -1.4376 8 6 3.9798 1.8030 -2.6032 9 6 2.6184 1.8347 -3.2485 10 1 1.8313 1.1931 -2.8806 11 6 2.3792 2.6785 -4.3124 12 7 1.1926 2.7022 -4.8790 13 14 3.7405 3.7882 -4.9488 14 1 4.5051 3.0777 -6.0051 15 1 3.1462 5.0256 -5.5153 16 1 4.6523 4.1434 -3.8318 17 6 4.2691 -0.3857 -1.5722 18 8 4.2425 -1.1198 -0.6072 19 6 4.6631 -0.9289 -2.9215 20 6 3.4652 -1.2593 -3.8302 21 7 4.2115 -2.4858 -4.1974 22 6 3.3197 -3.6521 -4.2455 23 1 2.6858 -3.6839 -3.3594 24 6 2.4573 -3.6217 -5.5272 25 6 2.8579 -4.9099 -6.2797 26 8 3.3602 -5.7949 -5.2550 27 6 4.1393 -4.9551 -4.3754 28 6 4.9562 -2.4401 -2.9195 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6054 1.9815 -0.8419 35 1 0.5563 2.0470 1.4401 36 1 2.1408 1.6419 2.1426 37 1 1.7888 4.0790 2.2046 38 1 3.1077 3.6821 1.0771 39 1 1.4949 4.0975 0.4492 40 1 3.9947 0.8193 0.6570 41 1 3.9367 2.4636 -0.0219 42 1 4.7133 1.4340 -3.3202 43 1 4.2554 2.8090 -2.2867 44 1 1.0242 3.2962 -5.6272 45 1 5.4337 -0.3332 -3.4109 46 1 2.5414 -1.4539 -3.2855 47 1 3.3342 -0.5599 -4.6559 48 1 1.3972 -3.6409 -5.2748 49 1 2.6924 -2.7410 -6.1249 50 1 1.9884 -5.3499 -6.7684 51 1 3.6371 -4.6953 -7.0112 52 1 5.1149 -4.7475 -4.8147 53 1 4.2542 -5.4299 -3.4009 54 1 6.0142 -2.6823 -3.0190 55 1 4.4693 -2.9808 -2.1080 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896894818.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:05 Heat of formation + Delta-G solvation = -74.514124 kcal Electronic energy + Delta-G solvation = -32296.884979 eV Core-core repulsion = 28333.836118 eV Total energy + Delta-G solvation = -3963.048860 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.96682 -40.53723 -39.18944 -37.89425 -36.23339 -34.34101 -33.29095 -32.63270 -30.79726 -30.23158 -29.07936 -27.75953 -27.06162 -25.27425 -24.40145 -23.66856 -23.47832 -22.50045 -21.12372 -20.68467 -19.59060 -18.84947 -18.26962 -17.74069 -17.48639 -16.92159 -16.55350 -16.36606 -15.90074 -15.74866 -15.58965 -15.43800 -15.05555 -14.80731 -14.68134 -14.40556 -14.39918 -14.05978 -13.79500 -13.76374 -13.54882 -13.38607 -13.33406 -13.00484 -12.84211 -12.60860 -12.53414 -12.45589 -12.36182 -12.19662 -12.08751 -11.92230 -11.88510 -11.70886 -11.66135 -11.62581 -11.26677 -11.23768 -11.21304 -10.81438 -10.72404 -10.58175 -9.92524 -9.32634 -8.18958 -6.21760 1.41766 1.45190 1.50891 1.71541 2.28554 2.40059 2.71809 3.05490 3.15320 3.39289 3.59959 3.69226 3.77549 3.88036 3.98822 4.00483 4.06455 4.08951 4.15290 4.25994 4.37415 4.38777 4.42157 4.47122 4.56285 4.61379 4.65472 4.69701 4.74158 4.76036 4.78148 4.79192 4.81338 4.84452 4.89926 4.94643 4.95854 4.98846 4.99103 5.09255 5.11511 5.16412 5.22605 5.27229 5.29618 5.45748 5.50117 5.53595 5.66952 5.68109 5.81308 6.01496 6.30580 6.68393 6.84138 7.31126 7.44131 8.95939 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009566 B = 0.004336 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2926.315862 B = 6455.871874 C = 7847.362866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.098 4.098 4 C -0.110 4.110 5 C -0.150 4.150 6 C 0.122 3.878 7 N -0.588 5.588 8 C 0.212 3.788 9 C -0.508 4.508 10 H 0.043 0.957 11 C 0.026 3.974 12 N -0.939 5.939 13 Si 0.923 3.077 14 H -0.267 1.267 15 H -0.294 1.294 16 H -0.242 1.242 17 C 0.522 3.478 18 O -0.583 6.583 19 C -0.135 4.135 20 C 0.052 3.948 21 N -0.467 5.467 22 C 0.015 3.985 23 H 0.048 0.952 24 C -0.148 4.148 25 C 0.052 3.948 26 O -0.394 6.394 27 C 0.061 3.939 28 C 0.032 3.968 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.028 0.972 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.041 0.959 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.044 0.956 43 H 0.040 0.960 44 H 0.263 0.737 45 H 0.128 0.872 46 H 0.047 0.953 47 H 0.088 0.912 48 H 0.072 0.928 49 H 0.080 0.920 50 H 0.107 0.893 51 H 0.071 0.929 52 H 0.077 0.923 53 H 0.099 0.901 54 H 0.114 0.886 55 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.865 -6.400 4.653 9.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.135 4.135 3 C -0.118 4.118 4 C -0.148 4.148 5 C -0.208 4.208 6 C 0.000 4.000 7 N -0.316 5.316 8 C 0.090 3.910 9 C -0.547 4.547 10 H 0.061 0.939 11 C -0.173 4.173 12 N -0.579 5.579 13 Si 0.747 3.253 14 H -0.192 1.192 15 H -0.221 1.221 16 H -0.166 1.166 17 C 0.311 3.689 18 O -0.465 6.465 19 C -0.156 4.156 20 C -0.077 4.077 21 N -0.191 5.191 22 C -0.095 4.095 23 H 0.066 0.934 24 C -0.186 4.186 25 C -0.025 4.025 26 O -0.312 6.312 27 C -0.016 4.016 28 C -0.097 4.097 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.146 0.854 46 H 0.066 0.934 47 H 0.106 0.894 48 H 0.091 0.909 49 H 0.099 0.901 50 H 0.125 0.875 51 H 0.089 0.911 52 H 0.095 0.905 53 H 0.117 0.883 54 H 0.132 0.868 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.065 -6.960 4.402 10.228 hybrid contribution -0.694 1.094 -0.090 1.299 sum 5.371 -5.866 4.312 9.048 Atomic orbital electron populations 1.21752 0.95791 1.01122 1.01451 1.21299 0.95601 0.96474 1.00136 1.21525 0.95497 0.95918 0.98826 1.21514 1.01402 0.95869 0.96050 1.21804 1.01526 0.95731 1.01706 1.21575 0.94940 0.99196 0.84323 1.47933 1.64676 1.08905 1.10135 1.19723 0.96644 0.90411 0.84260 1.21336 0.96639 1.22382 1.14358 0.93882 1.25548 0.97033 0.98086 0.96597 1.70036 1.23567 1.39880 1.24446 0.86088 0.80379 0.78821 0.79969 1.19197 1.22062 1.16582 1.20524 0.76307 0.81724 0.90342 1.90582 1.56557 1.57910 1.41402 1.23138 1.00732 0.98309 0.93467 1.23471 0.94081 0.92553 0.97628 1.68722 1.17434 1.01354 1.31583 1.23595 0.94688 0.92960 0.98240 0.93441 1.22921 0.99672 0.99895 0.96086 1.23480 0.99744 0.88595 0.90650 1.89076 1.69160 1.32677 1.40313 1.23389 0.94635 0.88323 0.95242 1.23816 1.01789 0.92963 0.91100 0.92949 0.91003 0.94824 0.95303 0.92585 0.92176 0.91537 0.91211 0.91243 0.92418 0.94007 0.90776 0.89902 0.93823 0.94190 0.92825 0.85406 0.93443 0.89371 0.90930 0.90099 0.87530 0.91085 0.90474 0.88292 0.86756 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 9.67 71.98 0.70 -3.93 16 2 C -0.10 -3.44 4.64 30.59 0.14 -3.30 16 3 C -0.10 -3.33 1.94 -10.79 -0.02 -3.35 16 4 C -0.11 -2.94 5.27 30.59 0.16 -2.78 16 5 C -0.15 -3.71 9.73 71.98 0.70 -3.01 16 6 C 0.12 4.10 4.87 86.38 0.42 4.52 16 7 N -0.59 -21.91 2.28 -826.14 -1.88 -23.79 16 8 C 0.21 8.44 4.10 85.63 0.35 8.79 16 9 C -0.51 -24.58 7.98 25.60 0.20 -24.38 16 10 H 0.04 2.41 7.60 -2.91 -0.02 2.39 16 11 C 0.03 1.33 5.47 84.66 0.46 1.79 16 12 N -0.94 -53.09 13.96 21.45 0.30 -52.79 16 13 Si 0.92 38.60 27.57 68.60 1.89 40.49 16 14 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 15 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.24 -9.16 6.41 99.48 0.64 -8.53 16 17 C 0.52 19.36 5.84 87.66 0.51 19.87 16 18 O -0.58 -23.38 14.30 -3.01 -0.04 -23.42 16 19 C -0.13 -4.40 3.08 -10.89 -0.03 -4.44 16 20 C 0.05 1.82 6.40 86.37 0.55 2.37 16 21 N -0.47 -13.67 5.86 -876.00 -5.14 -18.81 16 22 C 0.01 0.41 2.39 45.93 0.11 0.52 16 23 H 0.05 1.44 7.78 -2.39 -0.02 1.42 16 24 C -0.15 -3.85 6.58 31.61 0.21 -3.65 16 25 C 0.05 1.16 7.63 72.48 0.55 1.71 16 26 O -0.39 -10.30 11.65 -148.98 -1.74 -12.03 16 27 C 0.06 1.47 6.86 72.49 0.50 1.96 16 28 C 0.03 0.90 6.87 86.41 0.59 1.49 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.96 6.46 -2.39 -0.02 1.95 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.03 1.19 6.09 -2.39 -0.01 1.18 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 2.51 6.61 -2.38 -0.02 2.49 16 35 H 0.07 1.71 6.34 -2.39 -0.02 1.70 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.38 6.33 -2.39 -0.02 1.36 16 39 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 2.47 7.26 -2.39 -0.02 2.45 16 41 H 0.08 2.53 6.10 -2.39 -0.01 2.51 16 42 H 0.04 1.65 5.85 -2.39 -0.01 1.64 16 43 H 0.04 1.57 6.69 -2.38 -0.02 1.55 16 44 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 45 H 0.13 3.87 7.03 -2.39 -0.02 3.85 16 46 H 0.05 1.88 7.72 -2.39 -0.02 1.87 16 47 H 0.09 3.48 8.03 -2.38 -0.02 3.46 16 48 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.08 2.26 7.89 -2.39 -0.02 2.24 16 50 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 51 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 52 H 0.08 1.75 8.06 -2.39 -0.02 1.73 16 53 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 54 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 55 H 0.07 2.19 7.14 -2.39 -0.02 2.18 16 Total: -1.00 -58.91 412.42 0.28 -58.63 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: 0.78 Total: 37.51 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 6.11 Total: -5.79 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -6.72 Total: -95.39 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -1.78 Total: -35.45 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 1.89 Total: 40.49 kcal Total: -58.91 0.28 -58.63 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896894818.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.887 kcal (2) G-P(sol) polarization free energy of solvation -58.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds