Wall clock time and date at job start Tue Mar 31 2020 23:30:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53007 * 109.47091 * 2 1
4 4 C 1.52995 * 109.47776 * 239.99908 * 2 1 3
5 5 C 1.52998 * 109.47246 * 119.99479 * 2 1 3
6 6 C 1.50700 * 109.47015 * 60.00412 * 5 2 1
7 7 O 1.21286 * 120.00014 * 0.02562 * 6 5 2
8 8 N 1.34775 * 120.00476 * 179.97438 * 6 5 2
9 9 C 1.46921 * 120.63711 * 180.02562 * 8 6 5
10 10 C 1.53198 * 108.77812 * 233.58813 * 9 8 6
11 11 C 1.53039 * 109.31065 * 305.36276 * 10 9 8
12 12 C 1.52990 * 109.45874 * 181.38375 * 11 10 9
13 13 H 1.09000 * 110.67563 * 57.00779 * 12 11 10
14 14 O 1.44377 * 110.62140 * 294.04212 * 12 11 10
15 15 C 1.43744 * 106.98032 * 201.44055 * 14 12 11
16 16 C 1.54097 * 107.29232 * 26.50972 * 15 14 12
17 17 C 1.54813 * 104.18879 * 357.97414 * 16 15 14
18 18 H 1.09002 * 110.90684 * 97.31509 * 17 16 15
19 19 N 1.46502 * 110.90918 * 220.88400 * 17 16 15
20 20 C 1.36936 * 120.00204 * 270.67213 * 19 17 16
21 21 H 1.07999 * 120.00031 * 359.97438 * 20 19 17
22 22 C 1.38812 * 120.00011 * 179.97438 * 20 19 17
23 23 N 1.31618 * 119.99626 * 180.02562 * 22 20 19
24 24 Si 1.86798 * 120.00135 * 0.02562 * 22 20 19
25 25 H 1.48491 * 109.47409 * 90.00005 * 24 22 20
26 26 H 1.48497 * 109.47209 * 210.00099 * 24 22 20
27 27 H 1.48504 * 109.47113 * 329.99750 * 24 22 20
28 28 C 1.53038 * 109.52553 * 61.37043 * 11 10 9
29 29 C 1.46931 * 120.62718 * 359.97438 * 8 6 5
30 30 H 1.08995 * 109.47688 * 299.99763 * 1 2 3
31 31 H 1.09006 * 109.47112 * 60.00797 * 1 2 3
32 32 H 1.09008 * 109.46641 * 179.97438 * 1 2 3
33 33 H 1.08991 * 109.47574 * 179.97438 * 3 2 1
34 34 H 1.09004 * 109.46701 * 300.00083 * 3 2 1
35 35 H 1.09005 * 109.46652 * 59.99510 * 3 2 1
36 36 H 1.08995 * 109.46887 * 299.99908 * 4 2 1
37 37 H 1.09004 * 109.46862 * 59.99399 * 4 2 1
38 38 H 1.08996 * 109.47572 * 179.97438 * 4 2 1
39 39 H 1.09005 * 109.47320 * 300.00994 * 5 2 1
40 40 H 1.09003 * 109.47611 * 180.02562 * 5 2 1
41 41 H 1.09000 * 109.59269 * 113.79867 * 9 8 6
42 42 H 1.09003 * 109.70078 * 353.43957 * 9 8 6
43 43 H 1.08996 * 109.49578 * 185.41152 * 10 9 8
44 44 H 1.08999 * 109.49207 * 65.31250 * 10 9 8
45 45 H 1.09000 * 109.45515 * 301.35821 * 11 10 9
46 46 H 1.09005 * 109.87885 * 267.09111 * 15 14 12
47 47 H 1.08990 * 109.88482 * 145.93651 * 15 14 12
48 48 H 1.09004 * 110.49131 * 239.29645 * 16 15 14
49 49 H 1.09001 * 110.60267 * 116.70737 * 16 15 14
50 50 H 0.97001 * 119.99999 * 90.66398 * 19 17 16
51 51 H 0.97001 * 119.99534 * 180.02562 * 23 22 20
52 52 H 1.08999 * 109.50360 * 58.58199 * 28 11 10
53 53 H 1.09006 * 109.49513 * 178.67648 * 28 11 10
54 54 H 1.09002 * 109.58706 * 246.19803 * 29 8 6
55 55 H 1.08996 * 109.58553 * 6.48264 * 29 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0401 -0.7212 -1.2491
5 6 2.0400 -0.7211 1.2493
6 6 1.5377 -2.1420 1.2493
7 8 0.8409 -2.5389 0.3395
8 7 1.8637 -2.9720 2.2599
9 6 1.3822 -4.3600 2.2737
10 6 0.6766 -4.6239 3.6077
11 6 1.6233 -4.2756 4.7586
12 6 0.9343 -4.5706 6.0923
13 1 0.6198 -5.6131 6.1407
14 8 -0.1929 -3.6899 6.2880
15 6 -0.4610 -3.6585 7.6999
16 6 0.8628 -3.9702 8.4245
17 6 1.8713 -4.2275 7.2784
18 1 2.4556 -3.3322 7.0661
19 7 2.7477 -5.3574 7.5970
20 6 3.9215 -5.1451 8.2695
21 1 4.2013 -4.1447 8.5648
22 6 4.7516 -6.2158 8.5718
23 7 5.8795 -6.0117 9.2188
24 14 4.2679 -7.9461 8.0606
25 1 4.8071 -8.2312 6.7067
26 1 4.8246 -8.9228 9.0308
27 1 2.7874 -8.0600 8.0378
28 6 1.9871 -2.7907 4.6900
29 6 2.7084 -2.5063 3.3683
30 1 -0.3634 0.5138 0.8899
31 1 -0.3634 0.5137 -0.8901
32 1 -0.3633 -1.0278 -0.0005
33 1 3.1299 1.4427 0.0005
34 1 1.6766 1.9564 -0.8900
35 1 1.6765 1.9564 0.8900
36 1 1.6768 -1.7488 -1.2491
37 1 1.6767 -0.2074 -2.1392
38 1 3.1300 -0.7208 -1.2493
39 1 1.6765 -0.2073 2.1393
40 1 3.1300 -0.7208 1.2496
41 1 2.2265 -5.0409 2.1660
42 1 0.6815 -4.5140 1.4530
43 1 0.3992 -5.6761 3.6705
44 1 -0.2191 -4.0064 3.6738
45 1 2.5296 -4.8757 4.6774
46 1 -1.2077 -4.4114 7.9523
47 1 -0.8170 -2.6694 7.9877
48 1 0.7573 -4.8591 9.0465
49 1 1.1796 -3.1192 9.0275
50 1 2.4965 -6.2559 7.3316
51 1 6.4598 -6.7599 9.4297
52 1 1.0790 -2.1906 4.7460
53 1 2.6426 -2.5380 5.5235
54 1 3.6607 -3.0363 3.3496
55 1 2.8843 -1.4352 3.2685
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001071035173.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:30:50
Heat of formation + Delta-G solvation = -99.845230 kcal
Electronic energy + Delta-G solvation = -31482.450690 eV
Core-core repulsion = 27518.303390 eV
Total energy + Delta-G solvation = -3964.147300 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.44 seconds
Orbital eigenvalues (eV)
-41.58895 -40.71466 -38.66851 -37.08345 -36.39902 -34.46301 -33.62696 -32.24231
-31.30533 -29.89043 -28.76139 -28.07432 -27.99202 -26.07435 -24.64411 -24.34459
-23.30030 -21.74668 -21.37263 -20.22529 -19.71279 -19.36764 -18.16079 -17.49709
-16.96632 -16.71477 -16.52677 -16.30464 -16.03497 -15.45760 -15.30435 -15.17816
-15.05349 -14.87975 -14.78806 -14.47421 -14.40646 -14.17974 -14.03169 -13.61490
-13.34263 -13.17080 -12.96049 -12.89492 -12.86466 -12.73346 -12.63548 -12.43604
-12.25070 -12.20807 -12.16065 -11.99654 -11.85459 -11.81064 -11.71177 -11.58298
-11.51052 -11.39153 -11.02001 -10.95356 -10.52496 -10.36034 -9.56243 -9.32256
-8.01544 -5.35648 1.38868 1.40946 1.48066 1.69352 2.07401 2.48460
2.89153 3.29783 3.51704 3.59176 3.63492 3.75629 3.82642 3.95201
3.96525 4.09313 4.12970 4.16708 4.21902 4.27859 4.32176 4.40423
4.47787 4.56571 4.61093 4.63106 4.66191 4.68691 4.81005 4.83265
4.85880 4.87873 4.88807 4.90714 4.98596 5.01136 5.01798 5.09397
5.12225 5.19690 5.19902 5.24383 5.28408 5.35699 5.40325 5.50768
5.56085 5.58126 5.70366 5.76695 5.97096 6.22880 6.49713 7.06938
7.27340 7.81676 8.00292 9.19596
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.015239 B = 0.002787 C = 0.002648
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1836.909446 B =10045.430040 C =10572.958464
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.052 4.052
3 C -0.138 4.138
4 C -0.150 4.150
5 C -0.130 4.130
6 C 0.511 3.489
7 O -0.567 6.567
8 N -0.611 5.611
9 C 0.113 3.887
10 C -0.114 4.114
11 C -0.073 4.073
12 C 0.081 3.919
13 H 0.063 0.937
14 O -0.376 6.376
15 C 0.054 3.946
16 C -0.179 4.179
17 C 0.150 3.850
18 H 0.072 0.928
19 N -0.739 5.739
20 C -0.224 4.224
21 H 0.061 0.939
22 C -0.059 4.059
23 N -0.982 5.982
24 Si 0.947 3.053
25 H -0.277 1.277
26 H -0.301 1.301
27 H -0.254 1.254
28 C -0.121 4.121
29 C 0.107 3.893
30 H 0.051 0.949
31 H 0.052 0.948
32 H 0.058 0.942
33 H 0.063 0.937
34 H 0.059 0.941
35 H 0.062 0.938
36 H 0.058 0.942
37 H 0.052 0.948
38 H 0.053 0.947
39 H 0.108 0.892
40 H 0.109 0.891
41 H 0.071 0.929
42 H 0.081 0.919
43 H 0.079 0.921
44 H 0.062 0.938
45 H 0.079 0.921
46 H 0.062 0.938
47 H 0.097 0.903
48 H 0.062 0.938
49 H 0.069 0.931
50 H 0.365 0.635
51 H 0.257 0.743
52 H 0.071 0.929
53 H 0.074 0.926
54 H 0.073 0.927
55 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.247 11.531 -16.238 22.872
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.053 4.053
3 C -0.195 4.195
4 C -0.207 4.207
5 C -0.170 4.170
6 C 0.301 3.699
7 O -0.448 6.448
8 N -0.343 5.343
9 C -0.010 4.010
10 C -0.153 4.153
11 C -0.091 4.091
12 C 0.023 3.977
13 H 0.081 0.919
14 O -0.295 6.295
15 C -0.023 4.023
16 C -0.219 4.219
17 C 0.041 3.959
18 H 0.090 0.910
19 N -0.382 5.382
20 C -0.355 4.355
21 H 0.079 0.921
22 C -0.250 4.250
23 N -0.632 5.632
24 Si 0.775 3.225
25 H -0.203 1.203
26 H -0.228 1.228
27 H -0.178 1.178
28 C -0.159 4.159
29 C -0.015 4.015
30 H 0.070 0.930
31 H 0.071 0.929
32 H 0.077 0.923
33 H 0.082 0.918
34 H 0.078 0.922
35 H 0.081 0.919
36 H 0.077 0.923
37 H 0.071 0.929
38 H 0.072 0.928
39 H 0.126 0.874
40 H 0.127 0.873
41 H 0.089 0.911
42 H 0.099 0.901
43 H 0.097 0.903
44 H 0.081 0.919
45 H 0.097 0.903
46 H 0.080 0.920
47 H 0.115 0.885
48 H 0.081 0.919
49 H 0.088 0.912
50 H 0.199 0.801
51 H 0.066 0.934
52 H 0.090 0.910
53 H 0.093 0.907
54 H 0.092 0.908
55 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges -11.561 11.558 -16.777 23.425
hybrid contribution 0.252 -1.570 0.648 1.717
sum -11.309 9.988 -16.129 22.086
Atomic orbital electron populations
1.22047 0.95027 1.02482 1.01171 1.20297 0.95655 0.95574 0.93735
1.21859 1.01410 0.93861 1.02384 1.22046 1.00337 1.01476 0.96860
1.21888 1.03299 0.90884 1.00908 1.21185 0.79380 0.88596 0.80698
1.90552 1.39721 1.77936 1.36565 1.48286 1.51062 1.12070 1.22922
1.21538 0.99118 0.82298 0.98044 1.21811 0.98198 1.02139 0.93120
1.21093 0.98009 0.97911 0.92134 1.23234 0.85772 0.93551 0.95146
0.91878 1.88817 1.49780 1.67060 1.23871 1.23133 0.96030 1.02566
0.80598 1.23538 0.96404 1.02076 0.99895 1.21993 0.90545 0.91123
0.92206 0.90977 1.42568 1.21750 1.05010 1.68878 1.18955 0.95288
0.94250 1.26958 0.92143 1.25404 0.96764 1.01643 1.01231 1.69868
1.14141 1.31722 1.47510 0.85527 0.78744 0.80606 0.77606 1.20263
1.22780 1.17828 1.21867 1.01207 0.95565 0.97243 1.21919 0.93059
1.01863 0.84641 0.92961 0.92860 0.92346 0.91784 0.92238 0.91873
0.92299 0.92878 0.92831 0.87428 0.87259 0.91094 0.90065 0.90277
0.91944 0.90298 0.92014 0.88477 0.91905 0.91204 0.80148 0.93414
0.91035 0.90710 0.90828 0.87250
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.86 8.18 71.98 0.59 -2.27 16
2 C -0.05 -0.86 0.77 -52.18 -0.04 -0.90 16
3 C -0.14 -1.67 8.47 71.98 0.61 -1.06 16
4 C -0.15 -2.80 8.18 71.98 0.59 -2.21 16
5 C -0.13 -2.06 3.11 29.85 0.09 -1.97 16
6 C 0.51 11.43 7.11 87.66 0.62 12.06 16
7 O -0.57 -16.08 10.76 -3.05 -0.03 -16.11 16
8 N -0.61 -13.05 2.97 -818.79 -2.43 -15.49 16
9 C 0.11 2.51 6.43 86.37 0.56 3.07 16
10 C -0.11 -2.61 5.26 30.67 0.16 -2.44 16
11 C -0.07 -1.84 2.11 -10.77 -0.02 -1.86 16
12 C 0.08 2.33 2.67 31.27 0.08 2.41 16
13 H 0.06 1.85 8.02 -2.39 -0.02 1.83 16
14 O -0.38 -10.40 10.09 -148.98 -1.50 -11.91 16
15 C 0.05 1.34 7.70 72.35 0.56 1.90 16
16 C -0.18 -5.54 6.76 31.58 0.21 -5.32 16
17 C 0.15 5.16 3.11 46.29 0.14 5.30 16
18 H 0.07 2.56 5.85 -2.39 -0.01 2.55 16
19 N -0.74 -31.53 5.00 -316.79 -1.58 -33.11 16
20 C -0.22 -11.87 10.45 84.03 0.88 -10.99 16
21 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16
22 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16
23 N -0.98 -60.70 13.97 21.65 0.30 -60.40 16
24 Si 0.95 43.45 27.74 68.60 1.90 45.36 16
25 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16
26 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16
27 H -0.25 -10.48 6.52 99.48 0.65 -9.83 16
28 C -0.12 -2.73 4.92 30.69 0.15 -2.58 16
29 C 0.11 2.00 6.35 86.38 0.55 2.55 16
30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16
31 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16
32 H 0.06 1.44 5.51 -2.38 -0.01 1.43 16
33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16
34 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16
35 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16
36 H 0.06 1.43 5.51 -2.39 -0.01 1.41 16
37 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16
38 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16
39 H 0.11 1.41 7.70 -2.38 -0.02 1.39 16
40 H 0.11 1.36 7.94 -2.39 -0.02 1.34 16
41 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16
42 H 0.08 1.98 7.01 -2.39 -0.02 1.96 16
43 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16
44 H 0.06 1.56 7.94 -2.39 -0.02 1.55 16
45 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16
46 H 0.06 1.42 8.14 -2.38 -0.02 1.41 16
47 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16
48 H 0.06 2.11 8.06 -2.38 -0.02 2.10 16
49 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16
50 H 0.37 15.14 5.61 -92.71 -0.52 14.62 16
51 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16
52 H 0.07 1.67 7.64 -2.39 -0.02 1.65 16
53 H 0.07 1.84 6.10 -2.38 -0.01 1.83 16
54 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16
55 H 0.11 1.48 5.93 -2.39 -0.01 1.47 16
Total: -1.00 -66.07 407.52 3.13 -62.94
By element:
Atomic # 1 Polarization: 35.60 SS G_CDS: 0.28 Total: 35.88 kcal
Atomic # 6 Polarization: -13.36 SS G_CDS: 6.20 Total: -7.16 kcal
Atomic # 7 Polarization: -105.29 SS G_CDS: -3.72 Total: -109.00 kcal
Atomic # 8 Polarization: -26.48 SS G_CDS: -1.54 Total: -28.01 kcal
Atomic # 14 Polarization: 43.45 SS G_CDS: 1.90 Total: 45.36 kcal
Total: -66.07 3.13 -62.94 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001071035173.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.908 kcal
(2) G-P(sol) polarization free energy of solvation -66.066 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.974 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.938 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.845 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.44 seconds