Wall clock time and date at job start Tue Mar 31 2020 23:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.46904 * 2 1 4 4 C 1.52999 * 109.47438 * 59.99873 * 3 2 1 5 5 C 1.53003 * 109.47159 * 299.99535 * 3 2 1 6 6 C 1.50703 * 109.47148 * 180.02562 * 3 2 1 7 7 O 1.21279 * 119.99789 * 1.63388 * 6 3 2 8 8 N 1.34774 * 120.00059 * 181.64090 * 6 3 2 9 9 C 1.46933 * 120.63001 * 175.09516 * 8 6 3 10 10 C 1.53189 * 108.77491 * 233.63036 * 9 8 6 11 11 C 1.53036 * 109.31277 * 305.36358 * 10 9 8 12 12 C 1.53000 * 109.46036 * 181.38639 * 11 10 9 13 13 H 1.09007 * 110.27321 * 60.63514 * 12 11 10 14 14 O 1.43648 * 110.31207 * 298.55260 * 12 11 10 15 15 C 1.43242 * 109.97091 * 216.65919 * 14 12 11 16 16 C 1.54380 * 107.58763 * 1.70205 * 15 14 12 17 17 C 1.54939 * 110.31288 * 182.83259 * 12 11 10 18 18 H 1.09005 * 111.12408 * 37.44591 * 17 12 11 19 19 N 1.46497 * 111.12983 * 273.28102 * 17 12 11 20 20 C 1.36930 * 120.00404 * 154.99582 * 19 17 12 21 21 H 1.08009 * 119.99994 * 0.02562 * 20 19 17 22 22 C 1.38816 * 120.00380 * 180.02562 * 20 19 17 23 23 N 1.31616 * 120.00359 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 119.99812 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.46932 * 90.00315 * 24 22 20 26 26 H 1.48495 * 109.47643 * 210.00290 * 24 22 20 27 27 H 1.48502 * 109.47520 * 330.00607 * 24 22 20 28 28 C 1.53036 * 109.53621 * 61.36900 * 11 10 9 29 29 C 1.46922 * 120.63565 * 355.11905 * 8 6 3 30 30 H 1.08997 * 109.47326 * 300.00260 * 1 2 3 31 31 H 1.08998 * 109.47009 * 60.00317 * 1 2 3 32 32 H 1.08998 * 109.47165 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46957 * 239.99758 * 2 1 3 34 34 H 1.08998 * 109.47009 * 119.99683 * 2 1 3 35 35 H 1.09004 * 109.46885 * 169.30451 * 4 3 2 36 36 H 1.08997 * 109.46871 * 289.30375 * 4 3 2 37 37 H 1.08994 * 109.47191 * 49.30467 * 4 3 2 38 38 H 1.09001 * 109.47276 * 310.48423 * 5 3 2 39 39 H 1.09002 * 109.47256 * 70.48043 * 5 3 2 40 40 H 1.08999 * 109.47433 * 190.47707 * 5 3 2 41 41 H 1.08995 * 109.58574 * 113.84203 * 9 8 6 42 42 H 1.09002 * 109.58290 * 353.41702 * 9 8 6 43 43 H 1.09006 * 109.49961 * 65.31957 * 10 9 8 44 44 H 1.09005 * 109.49236 * 185.41418 * 10 9 8 45 45 H 1.09000 * 109.46249 * 301.34299 * 11 10 9 46 46 H 1.08992 * 109.83018 * 121.21971 * 15 14 12 47 47 H 1.08996 * 109.82617 * 242.19690 * 15 14 12 48 48 H 1.09006 * 110.84638 * 139.54889 * 16 15 14 49 49 H 1.08998 * 110.85136 * 262.97238 * 16 15 14 50 50 H 0.97006 * 119.99636 * 335.00086 * 19 17 12 51 51 H 0.97001 * 120.00325 * 180.02562 * 23 22 20 52 52 H 1.09004 * 109.49678 * 178.68551 * 28 11 10 53 53 H 1.08998 * 109.50284 * 58.58568 * 28 11 10 54 54 H 1.08998 * 109.58940 * 246.16086 * 29 8 6 55 55 H 1.09004 * 109.57989 * 6.57864 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5299 2.1638 1.2492 5 6 1.5300 2.1637 -1.2493 6 6 3.5470 1.4425 -0.0006 7 8 4.1534 0.3926 -0.0310 8 7 4.2208 2.6092 0.0327 9 6 5.6861 2.6246 0.1406 10 6 6.0837 3.5061 1.3287 11 6 5.4509 4.8900 1.1663 12 6 5.8739 5.7842 2.3336 13 1 6.9579 5.8979 2.3486 14 8 5.4134 5.2319 3.5771 15 6 5.0181 6.2852 4.4637 16 6 5.2030 7.6212 3.7125 17 6 5.1871 7.1689 2.2268 18 1 4.1665 7.0736 1.8561 19 7 5.9676 8.0822 1.3884 20 6 5.3487 9.1239 0.7505 21 1 4.2851 9.2724 0.8657 22 6 6.0882 9.9890 -0.0443 23 7 5.4934 10.9905 -0.6571 24 14 7.9278 9.7326 -0.2430 25 1 8.1810 8.8448 -1.4061 26 1 8.5889 11.0432 -0.4675 27 1 8.4760 9.1059 0.9867 28 6 3.9264 4.7572 1.1524 29 6 3.5043 3.8899 -0.0377 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0406 3.1215 1.3496 36 1 0.4568 2.3319 1.1589 37 1 1.7291 1.5518 2.1289 38 1 1.7327 1.5533 -2.1294 39 1 0.4562 2.3284 -1.1609 40 1 2.0378 3.1231 -1.3477 41 1 6.1157 3.0303 -0.7753 42 1 6.0514 1.6101 0.3000 43 1 5.7304 3.0508 2.2540 44 1 7.1689 3.6039 1.3620 45 1 5.7853 5.3346 0.2289 46 1 3.9723 6.1600 4.7436 47 1 5.6449 6.2727 5.3553 48 1 4.3761 8.3005 3.9200 49 1 6.1561 8.0827 3.9704 50 1 6.9229 7.9490 1.2852 51 1 6.0101 11.5948 -1.2127 52 1 3.4759 5.7455 1.0601 53 1 3.5933 4.2901 2.0792 54 1 3.7559 4.3988 -0.9682 55 1 2.4300 3.7102 0.0038 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071082304.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:58 Heat of formation + Delta-G solvation = -85.410008 kcal Electronic energy + Delta-G solvation = -32114.573791 eV Core-core repulsion = 28151.052450 eV Total energy + Delta-G solvation = -3963.521341 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.96605 -40.75659 -38.33589 -37.46854 -36.40377 -34.45973 -33.63326 -32.46044 -31.35948 -30.67338 -29.44165 -28.31904 -26.66197 -25.50313 -24.66322 -24.40826 -23.36452 -22.08794 -21.59260 -20.66098 -19.75804 -19.47757 -17.75363 -17.63909 -17.18433 -16.99618 -16.40673 -16.28010 -15.81081 -15.74564 -15.49012 -15.25332 -15.09581 -14.88741 -14.69403 -14.46867 -14.29873 -14.09599 -13.89791 -13.59455 -13.48385 -13.37769 -13.24050 -13.00796 -12.80597 -12.77840 -12.57162 -12.45567 -12.38991 -12.17624 -12.12679 -12.11118 -11.93342 -11.84002 -11.79018 -11.57371 -11.54357 -11.25138 -11.03692 -10.93124 -10.54743 -10.32422 -9.65072 -9.32010 -8.01302 -5.35275 1.39296 1.40751 1.47873 1.60130 2.00588 2.48520 2.85638 3.29612 3.39016 3.51347 3.62735 3.72881 3.77319 3.89478 3.91064 4.06907 4.09850 4.18305 4.20897 4.21956 4.30483 4.38534 4.43890 4.47074 4.54242 4.58416 4.59253 4.66940 4.69133 4.73536 4.80206 4.84725 4.90328 4.93537 4.93908 4.98245 5.03199 5.08134 5.08348 5.14403 5.16253 5.19414 5.22690 5.28371 5.36413 5.40427 5.50584 5.51514 5.60413 5.77404 6.09922 6.23201 6.41604 7.06816 7.14556 7.81541 7.99832 9.19607 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014217 B = 0.003139 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.069480 B = 8918.306065 C = 9346.911089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.077 4.077 4 C -0.157 4.157 5 C -0.158 4.158 6 C 0.517 3.483 7 O -0.589 6.589 8 N -0.603 5.603 9 C 0.110 3.890 10 C -0.113 4.113 11 C -0.077 4.077 12 C 0.084 3.916 13 H 0.061 0.939 14 O -0.382 6.382 15 C 0.057 3.943 16 C -0.178 4.178 17 C 0.150 3.850 18 H 0.081 0.919 19 N -0.737 5.737 20 C -0.223 4.223 21 H 0.064 0.936 22 C -0.057 4.057 23 N -0.981 5.981 24 Si 0.945 3.055 25 H -0.278 1.278 26 H -0.301 1.301 27 H -0.255 1.255 28 C -0.125 4.125 29 C 0.086 3.914 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.062 0.938 50 H 0.365 0.635 51 H 0.257 0.743 52 H 0.078 0.922 53 H 0.075 0.925 54 H 0.073 0.927 55 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.098 -19.007 4.719 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.080 4.080 4 C -0.213 4.213 5 C -0.215 4.215 6 C 0.307 3.693 7 O -0.469 6.469 8 N -0.335 5.335 9 C -0.012 4.012 10 C -0.151 4.151 11 C -0.095 4.095 12 C 0.026 3.974 13 H 0.079 0.921 14 O -0.301 6.301 15 C -0.020 4.020 16 C -0.218 4.218 17 C 0.040 3.960 18 H 0.098 0.902 19 N -0.380 5.380 20 C -0.354 4.354 21 H 0.082 0.918 22 C -0.249 4.249 23 N -0.631 5.631 24 Si 0.773 3.227 25 H -0.204 1.204 26 H -0.228 1.228 27 H -0.179 1.179 28 C -0.162 4.162 29 C -0.035 4.035 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.099 0.901 47 H 0.092 0.908 48 H 0.093 0.907 49 H 0.081 0.919 50 H 0.198 0.802 51 H 0.066 0.934 52 H 0.097 0.903 53 H 0.094 0.906 54 H 0.092 0.908 55 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.950 -19.632 4.679 21.691 hybrid contribution 1.609 0.756 -0.308 1.805 sum -6.341 -18.875 4.371 20.386 Atomic orbital electron populations 1.21853 0.93306 1.02405 1.03027 1.21326 0.97199 0.93256 1.01607 1.20801 0.89041 0.98889 0.99291 1.22295 1.03415 1.00690 0.94936 1.22322 1.03562 1.00654 0.94957 1.21253 0.91201 0.82554 0.74262 1.90630 1.71410 1.32574 1.52333 1.48144 1.07202 1.06330 1.71790 1.21596 0.80020 1.00882 0.98708 1.21783 1.00945 0.94385 0.97955 1.21170 0.96592 0.94839 0.96931 1.23059 0.97401 0.92384 0.84587 0.92087 1.88362 1.84848 1.31515 1.25404 1.23092 1.00734 0.85423 0.92737 1.23684 1.02490 0.97856 0.97815 1.22145 0.95973 0.88171 0.89664 0.90170 1.42525 1.06722 1.31873 1.56867 1.18969 0.93553 1.02795 1.20109 0.91839 1.25372 1.01917 0.97545 1.00054 1.69855 1.36782 1.19441 1.37016 0.85562 0.81609 0.76726 0.78786 1.20372 1.22801 1.17927 1.21963 0.95081 1.00339 0.98864 1.22558 0.99346 0.82769 0.98848 0.91402 0.91353 0.92269 0.92993 0.93121 0.90579 0.88802 0.92729 0.92536 0.88741 0.90595 0.90978 0.90438 0.91809 0.90254 0.90459 0.90089 0.90804 0.90734 0.91880 0.80177 0.93417 0.90339 0.90644 0.90828 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.23 71.98 0.66 -1.16 16 2 C -0.10 -1.77 4.24 30.59 0.13 -1.64 16 3 C -0.08 -1.40 0.52 -52.93 -0.03 -1.43 16 4 C -0.16 -2.34 7.41 71.98 0.53 -1.81 16 5 C -0.16 -2.28 7.41 71.98 0.53 -1.75 16 6 C 0.52 13.22 6.49 87.66 0.57 13.79 16 7 O -0.59 -19.58 15.42 -3.03 -0.05 -19.62 16 8 N -0.60 -14.02 2.97 -818.92 -2.43 -16.45 16 9 C 0.11 2.65 6.42 86.36 0.55 3.20 16 10 C -0.11 -2.66 5.22 30.67 0.16 -2.50 16 11 C -0.08 -1.96 2.12 -10.77 -0.02 -1.98 16 12 C 0.08 2.41 2.84 31.26 0.09 2.50 16 13 H 0.06 1.82 8.00 -2.38 -0.02 1.80 16 14 O -0.38 -10.46 9.86 -148.98 -1.47 -11.93 16 15 C 0.06 1.39 7.79 72.45 0.56 1.95 16 16 C -0.18 -5.35 6.72 31.86 0.21 -5.14 16 17 C 0.15 5.02 3.06 46.45 0.14 5.16 16 18 H 0.08 2.73 5.67 -2.38 -0.01 2.72 16 19 N -0.74 -31.10 5.06 -316.07 -1.60 -32.70 16 20 C -0.22 -11.69 10.44 84.04 0.88 -10.81 16 21 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 22 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 23 N -0.98 -60.11 13.97 21.65 0.30 -59.81 16 24 Si 0.95 43.34 27.73 68.60 1.90 45.24 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 27 H -0.25 -10.56 6.52 99.48 0.65 -9.91 16 28 C -0.12 -2.82 4.58 30.67 0.14 -2.68 16 29 C 0.09 1.71 3.92 86.36 0.34 2.05 16 30 H 0.07 0.71 6.68 -2.39 -0.02 0.70 16 31 H 0.07 0.71 6.68 -2.39 -0.02 0.69 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 1.10 8.08 -2.39 -0.02 1.08 16 34 H 0.05 1.08 8.12 -2.39 -0.02 1.06 16 35 H 0.08 1.18 3.90 -2.38 -0.01 1.17 16 36 H 0.09 0.98 6.90 -2.39 -0.02 0.96 16 37 H 0.05 0.90 8.11 -2.39 -0.02 0.89 16 38 H 0.06 0.89 8.11 -2.39 -0.02 0.87 16 39 H 0.09 0.94 6.89 -2.39 -0.02 0.93 16 40 H 0.08 1.09 4.74 -2.39 -0.01 1.08 16 41 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.08 2.05 7.04 -2.39 -0.02 2.04 16 43 H 0.06 1.65 7.80 -2.38 -0.02 1.63 16 44 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 45 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 49 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 50 H 0.36 15.09 5.62 -92.70 -0.52 14.57 16 51 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 52 H 0.08 1.90 5.99 -2.38 -0.01 1.89 16 53 H 0.07 1.71 7.02 -2.39 -0.02 1.69 16 54 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 55 H 0.13 2.03 2.84 -2.39 -0.01 2.02 16 Total: -1.00 -67.45 397.48 2.89 -64.55 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: 0.30 Total: 35.68 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 5.93 Total: -4.96 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -3.73 Total: -108.96 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -1.52 Total: -31.55 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.90 Total: 45.24 kcal Total: -67.45 2.89 -64.55 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071082304.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.855 kcal (2) G-P(sol) polarization free energy of solvation -67.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds