Wall clock time and date at job start Tue Mar 31 2020 21:30:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53005 * 109.46787 * 2 1
4 4 C 1.53002 * 109.47100 * 186.11132 * 3 2 1
5 5 C 1.53001 * 109.47009 * 306.11090 * 3 2 1
6 6 C 1.53006 * 109.47073 * 300.00187 * 5 3 2
7 7 C 1.50703 * 109.47223 * 66.11183 * 3 2 1
8 8 O 1.21276 * 119.99668 * 247.33862 * 7 3 2
9 9 N 1.34774 * 120.00009 * 67.33503 * 7 3 2
10 10 C 1.47171 * 121.07842 * 355.25437 * 9 7 3
11 11 C 1.53285 * 108.51843 * 231.29000 * 10 9 7
12 12 H 1.09002 * 109.50955 * 66.88773 * 11 10 9
13 13 C 1.52997 * 109.51201 * 186.98912 * 11 10 9
14 14 O 1.43104 * 109.26446 * 306.93942 * 11 10 9
15 15 C 1.41871 * 114.44783 * 60.78645 * 14 11 10
16 16 C 1.54380 * 110.71400 * 177.01030 * 15 14 11
17 17 C 1.54459 * 102.88080 * 276.35305 * 16 15 14
18 18 N 1.47082 * 107.29055 * 338.50448 * 17 16 15
19 19 C 1.36943 * 125.62898 * 178.96162 * 18 17 16
20 20 H 1.07995 * 120.00240 * 180.02562 * 19 18 17
21 21 C 1.38816 * 119.99427 * 0.03023 * 19 18 17
22 22 N 1.31613 * 120.00558 * 359.97438 * 21 19 18
23 23 Si 1.86807 * 119.99512 * 179.97438 * 21 19 18
24 24 H 1.48500 * 109.46993 * 359.97438 * 23 21 19
25 25 H 1.48491 * 109.46904 * 119.99841 * 23 21 19
26 26 H 1.48499 * 109.46744 * 239.99814 * 23 21 19
27 27 C 1.47575 * 108.74542 * 359.01124 * 18 17 16
28 28 C 1.47319 * 121.07514 * 175.23075 * 9 7 3
29 29 H 1.08991 * 109.47301 * 299.99772 * 1 2 3
30 30 H 1.08999 * 109.47242 * 60.00579 * 1 2 3
31 31 H 1.09005 * 109.46818 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.47376 * 240.00274 * 2 1 3
33 33 H 1.08999 * 109.47242 * 119.99421 * 2 1 3
34 34 H 1.08998 * 109.47109 * 294.53496 * 4 3 2
35 35 H 1.09001 * 109.46890 * 54.53258 * 4 3 2
36 36 H 1.08996 * 109.46839 * 174.53116 * 4 3 2
37 37 H 1.09005 * 109.47079 * 60.00001 * 5 3 2
38 38 H 1.09005 * 109.47074 * 180.02562 * 5 3 2
39 39 H 1.08999 * 109.46824 * 180.02562 * 6 5 3
40 40 H 1.09000 * 109.46574 * 299.99868 * 6 5 3
41 41 H 1.08998 * 109.47249 * 59.99607 * 6 5 3
42 42 H 1.09002 * 109.63060 * 111.57743 * 10 9 7
43 43 H 1.09003 * 109.62956 * 350.99556 * 10 9 7
44 44 H 1.08999 * 109.47461 * 59.89653 * 13 11 10
45 45 H 1.08999 * 109.47226 * 299.89712 * 13 11 10
46 46 H 1.09000 * 109.46950 * 179.90126 * 13 11 10
47 47 H 1.08998 * 110.72861 * 34.70187 * 16 15 14
48 48 H 1.09005 * 110.73366 * 157.82126 * 16 15 14
49 49 H 1.08997 * 109.87709 * 97.92706 * 17 16 15
50 50 H 1.08995 * 109.87445 * 219.08486 * 17 16 15
51 51 H 0.96993 * 120.00269 * 180.02562 * 22 21 19
52 52 H 1.08992 * 110.37530 * 264.48291 * 27 18 17
53 53 H 1.09003 * 110.37407 * 142.13477 * 27 18 17
54 54 H 1.08995 * 109.63746 * 250.57802 * 28 9 7
55 55 H 1.08992 * 109.63879 * 10.99002 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 3.5622 1.4454 -0.1536
5 6 1.4084 2.2067 -1.1654
6 6 1.7891 1.5311 -2.4843
7 6 1.6649 2.1080 1.2991
8 8 0.8571 3.0126 1.3060
9 7 2.2271 1.6978 2.4533
10 6 3.1304 0.5364 2.4876
11 6 2.6502 -0.4217 3.5836
12 1 1.6850 -0.8426 3.3018
13 6 3.6685 -1.5501 3.7581
14 8 2.5174 0.2970 4.8139
15 6 1.5813 1.3622 4.7737
16 6 1.4521 2.0283 6.1604
17 6 0.4368 1.1183 6.8862
18 7 -0.3211 0.3972 5.8523
19 6 -1.3062 -0.5256 6.0832
20 1 -1.8051 -1.0022 5.2524
21 6 -1.6634 -0.8484 7.3852
22 7 -1.0551 -0.2679 8.3977
23 14 -3.0076 -2.1068 7.7001
24 1 -3.5298 -2.6083 6.4036
25 1 -2.4513 -3.2400 8.4820
26 1 -4.1106 -1.4717 8.4652
27 6 0.1560 0.8315 4.5250
28 6 1.9577 2.3977 3.7212
29 1 -0.3633 0.5137 0.8899
30 1 -0.3634 0.5137 -0.8900
31 1 -0.3633 -1.0277 0.0005
32 1 1.8934 -0.5138 -0.8900
33 1 1.8934 -0.5137 0.8900
34 1 4.0168 0.9864 0.7244
35 1 3.8386 0.8798 -1.0434
36 1 3.9156 2.4719 -0.2511
37 1 0.3238 2.2047 -1.0560
38 1 1.7720 3.2343 -1.1657
39 1 1.3395 2.0758 -3.3145
40 1 2.8736 1.5332 -2.5937
41 1 1.4259 0.5034 -2.4843
42 1 4.1448 0.8678 2.7096
43 1 3.1109 0.0287 1.5232
44 1 4.6334 -1.1285 4.0397
45 1 3.7704 -2.0959 2.8201
46 1 3.3272 -2.2299 4.5388
47 1 2.4105 2.0279 6.6794
48 1 1.0662 3.0435 6.0664
49 1 0.9647 0.4076 7.5221
50 1 -0.2407 1.7246 7.4873
51 1 -1.3044 -0.4937 9.3074
52 1 -0.4813 1.6243 4.1335
53 1 0.1802 -0.0125 3.8357
54 1 2.8507 2.9356 4.0396
55 1 1.1361 3.1006 3.5843
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001071243979.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:30:34
Heat of formation + Delta-G solvation = -61.307290 kcal
Electronic energy + Delta-G solvation = -33300.228622 eV
Core-core repulsion = 29337.752453 eV
Total energy + Delta-G solvation = -3962.476169 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.35 seconds
Orbital eigenvalues (eV)
-42.29587 -40.59002 -38.00920 -37.78730 -35.88422 -34.86360 -33.00659 -32.13210
-31.25810 -30.95439 -29.56390 -27.75922 -27.47306 -26.02707 -25.25619 -24.35660
-23.18528 -22.17146 -21.80703 -20.44936 -19.67752 -19.00304 -17.97445 -17.56691
-17.43072 -16.84683 -16.64466 -16.30441 -15.93905 -15.66751 -15.58978 -15.29392
-15.11865 -14.70063 -14.60640 -14.06329 -13.90826 -13.82332 -13.70425 -13.63200
-13.51904 -13.14657 -13.09691 -12.99917 -12.89744 -12.84232 -12.69583 -12.60442
-12.48541 -12.20871 -12.09700 -12.06422 -12.01359 -11.96826 -11.88151 -11.72419
-11.59043 -11.41126 -11.12620 -10.89995 -10.74099 -10.48810 -9.51866 -8.94479
-7.88901 -5.24971 1.41173 1.43124 1.53248 1.58185 1.84334 2.44720
2.61454 3.28288 3.32316 3.47308 3.60138 3.64856 3.71857 3.82548
3.87777 3.94667 4.03985 4.08269 4.15610 4.28357 4.36464 4.41912
4.43088 4.51381 4.51917 4.58273 4.61417 4.66063 4.67718 4.69038
4.77150 4.81434 4.89837 4.92272 4.93769 4.96859 5.01972 5.03963
5.09616 5.15664 5.20872 5.25488 5.27593 5.31017 5.34903 5.36487
5.40465 5.59765 5.60459 5.71413 6.13897 6.33889 6.37173 7.05411
7.11031 7.70659 8.36130 9.21702
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.014900 B = 0.003704 C = 0.003492
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1878.745930 B = 7557.736776 C = 8016.050567
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C -0.120 4.120
3 C -0.072 4.072
4 C -0.160 4.160
5 C -0.100 4.100
6 C -0.148 4.148
7 C 0.520 3.480
8 O -0.584 6.584
9 N -0.611 5.611
10 C 0.066 3.934
11 C 0.059 3.941
12 H 0.041 0.959
13 C -0.135 4.135
14 O -0.368 6.368
15 C 0.110 3.890
16 C -0.120 4.120
17 C 0.192 3.808
18 N -0.619 5.619
19 C -0.246 4.246
20 H 0.074 0.926
21 C -0.061 4.061
22 N -0.947 5.947
23 Si 0.979 3.021
24 H -0.268 1.268
25 H -0.287 1.287
26 H -0.289 1.289
27 C 0.125 3.875
28 C 0.104 3.896
29 H 0.015 0.985
30 H 0.067 0.933
31 H 0.065 0.935
32 H 0.113 0.887
33 H 0.076 0.924
34 H 0.084 0.916
35 H 0.099 0.901
36 H 0.057 0.943
37 H 0.051 0.949
38 H 0.051 0.949
39 H 0.057 0.943
40 H 0.074 0.926
41 H 0.068 0.932
42 H 0.101 0.899
43 H 0.141 0.859
44 H 0.078 0.922
45 H 0.106 0.894
46 H 0.046 0.954
47 H 0.093 0.907
48 H 0.091 0.909
49 H 0.014 0.986
50 H 0.009 0.991
51 H 0.248 0.752
52 H 0.009 0.991
53 H 0.033 0.967
54 H 0.096 0.904
55 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.354 0.405 -21.263 26.230
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C -0.157 4.157
3 C -0.075 4.075
4 C -0.216 4.216
5 C -0.138 4.138
6 C -0.205 4.205
7 C 0.311 3.689
8 O -0.463 6.463
9 N -0.344 5.344
10 C -0.056 4.056
11 C 0.001 3.999
12 H 0.059 0.941
13 C -0.193 4.193
14 O -0.287 6.287
15 C 0.068 3.932
16 C -0.158 4.158
17 C 0.068 3.932
18 N -0.345 5.345
19 C -0.375 4.375
20 H 0.092 0.908
21 C -0.255 4.255
22 N -0.596 5.596
23 Si 0.807 3.193
24 H -0.193 1.193
25 H -0.214 1.214
26 H -0.216 1.216
27 C -0.001 4.001
28 C -0.020 4.020
29 H 0.035 0.965
30 H 0.086 0.914
31 H 0.084 0.916
32 H 0.131 0.869
33 H 0.094 0.906
34 H 0.102 0.898
35 H 0.118 0.882
36 H 0.076 0.924
37 H 0.069 0.931
38 H 0.070 0.930
39 H 0.076 0.924
40 H 0.093 0.907
41 H 0.087 0.913
42 H 0.119 0.881
43 H 0.159 0.841
44 H 0.097 0.903
45 H 0.125 0.875
46 H 0.065 0.935
47 H 0.112 0.888
48 H 0.109 0.891
49 H 0.032 0.968
50 H 0.027 0.973
51 H 0.058 0.942
52 H 0.027 0.973
53 H 0.051 0.949
54 H 0.114 0.886
55 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 14.930 0.745 -20.943 25.731
hybrid contribution -1.690 -0.218 0.956 1.954
sum 13.240 0.527 -19.988 23.981
Atomic orbital electron populations
1.21861 0.96755 1.01916 1.00946 1.21946 0.95564 0.93457 1.04717
1.20891 0.99331 0.96707 0.90561 1.22373 0.90420 1.03628 1.05192
1.21383 1.00071 0.98470 0.93914 1.21866 1.02674 1.01051 0.94877
1.21386 0.79043 0.82462 0.86029 1.90656 1.35188 1.33191 1.87305
1.48234 1.47707 1.31452 1.06962 1.23326 0.94059 0.86278 1.01894
1.22779 0.99324 0.93146 0.84639 0.94150 1.21725 0.97940 0.95781
1.03816 1.87806 1.59978 1.46041 1.34855 1.22021 0.87839 0.87536
0.95789 1.22739 1.00614 0.98726 0.93716 1.20867 0.90748 0.91875
0.89754 1.44720 1.41706 1.47089 1.01030 1.19396 1.10815 1.14879
0.92422 0.90825 1.25645 1.02332 1.02326 0.95155 1.70187 1.45046
1.46504 0.97869 0.85004 0.78249 0.78172 0.77855 1.19276 1.21378
1.21635 1.21963 0.93768 0.96243 0.88092 1.21929 1.02816 0.94367
0.82867 0.96543 0.91383 0.91562 0.86896 0.90622 0.89787 0.88240
0.92386 0.93074 0.92991 0.92416 0.90714 0.91341 0.88095 0.84142
0.90299 0.87525 0.93461 0.88837 0.89088 0.96812 0.97276 0.94238
0.97327 0.94876 0.88579 0.89982
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.45 9.22 71.98 0.66 -2.79 16
2 C -0.12 -1.93 4.13 30.60 0.13 -1.80 16
3 C -0.07 -1.32 0.31 -52.92 -0.02 -1.34 16
4 C -0.16 -1.85 7.57 71.98 0.55 -1.31 16
5 C -0.10 -1.91 3.80 30.60 0.12 -1.80 16
6 C -0.15 -1.72 9.18 71.98 0.66 -1.06 16
7 C 0.52 14.60 5.53 87.66 0.48 15.08 16
8 O -0.58 -21.66 15.46 -3.02 -0.05 -21.70 16
9 N -0.61 -16.24 2.95 -818.69 -2.41 -18.66 16
10 C 0.07 1.29 3.36 86.35 0.29 1.58 16
11 C 0.06 1.59 3.15 30.69 0.10 1.68 16
12 H 0.04 1.30 6.28 -2.39 -0.01 1.28 16
13 C -0.14 -2.69 9.57 71.98 0.69 -2.00 16
14 O -0.37 -13.21 9.92 -148.95 -1.48 -14.69 16
15 C 0.11 4.09 0.83 -10.16 -0.01 4.08 16
16 C -0.12 -4.69 6.12 31.56 0.19 -4.50 16
17 C 0.19 10.17 5.38 86.76 0.47 10.64 16
18 N -0.62 -34.45 3.40 -692.77 -2.36 -36.80 16
19 C -0.25 -14.74 10.28 84.03 0.86 -13.87 16
20 H 0.07 4.29 7.83 -2.91 -0.02 4.27 16
21 C -0.06 -3.65 5.49 84.86 0.47 -3.18 16
22 N -0.95 -59.04 10.31 21.65 0.22 -58.82 16
23 Si 0.98 47.53 29.55 68.60 2.03 49.55 16
24 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16
25 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16
26 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16
27 C 0.13 5.78 6.19 86.55 0.54 6.31 16
28 C 0.10 3.22 5.31 86.01 0.46 3.67 16
29 H 0.02 0.47 7.42 -2.39 -0.02 0.46 16
30 H 0.07 1.38 6.30 -2.39 -0.02 1.36 16
31 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16
32 H 0.11 1.09 6.77 -2.39 -0.02 1.07 16
33 H 0.08 1.22 5.08 -2.39 -0.01 1.21 16
34 H 0.08 0.83 4.25 -2.39 -0.01 0.82 16
35 H 0.10 0.63 6.73 -2.39 -0.02 0.62 16
36 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16
37 H 0.05 1.21 6.21 -2.38 -0.01 1.20 16
38 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16
39 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16
40 H 0.07 0.62 6.56 -2.39 -0.02 0.61 16
41 H 0.07 0.68 6.56 -2.39 -0.02 0.66 16
42 H 0.10 1.57 7.91 -2.39 -0.02 1.55 16
43 H 0.14 1.93 2.82 -2.39 -0.01 1.93 16
44 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16
45 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16
46 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16
47 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16
48 H 0.09 3.21 7.99 -2.38 -0.02 3.19 16
49 H 0.01 0.81 7.38 -2.39 -0.02 0.79 16
50 H 0.01 0.53 7.50 -2.39 -0.02 0.51 16
51 H 0.25 14.91 8.31 -92.71 -0.77 14.13 16
52 H 0.01 0.44 7.82 -2.39 -0.02 0.42 16
53 H 0.03 1.54 6.12 -2.39 -0.01 1.53 16
54 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16
55 H 0.08 2.89 6.83 -2.39 -0.02 2.87 16
Total: -1.00 -79.28 394.27 3.46 -75.82
By element:
Atomic # 1 Polarization: 15.03 SS G_CDS: 0.87 Total: 15.91 kcal
Atomic # 6 Polarization: 2.76 SS G_CDS: 6.63 Total: 9.39 kcal
Atomic # 7 Polarization: -109.73 SS G_CDS: -4.55 Total: -114.28 kcal
Atomic # 8 Polarization: -34.87 SS G_CDS: -1.52 Total: -36.39 kcal
Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.55 kcal
Total: -79.28 3.46 -75.82 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001071243979.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.511 kcal
(2) G-P(sol) polarization free energy of solvation -79.279 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.768 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.819 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.307 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.35 seconds