Wall clock time and date at job start Tue Mar 31 2020 21:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47017 * 2 1 4 4 C 1.53000 * 109.47353 * 185.68230 * 3 2 1 5 5 C 1.53007 * 109.47012 * 305.68050 * 3 2 1 6 6 C 1.52992 * 109.46935 * 299.99730 * 5 3 2 7 7 C 1.50701 * 109.46780 * 65.68168 * 3 2 1 8 8 O 1.21288 * 119.99496 * 240.83486 * 7 3 2 9 9 N 1.34767 * 120.00196 * 60.83962 * 7 3 2 10 10 C 1.47168 * 121.06265 * 354.98246 * 9 7 3 11 11 C 1.53296 * 108.49269 * 128.76231 * 10 9 7 12 12 H 1.08994 * 109.51091 * 293.02596 * 11 10 9 13 13 C 1.53000 * 109.51497 * 172.92288 * 11 10 9 14 14 O 1.43090 * 109.21482 * 52.99717 * 11 10 9 15 15 C 1.42051 * 114.40589 * 298.85463 * 14 11 10 16 16 C 1.54525 * 110.32866 * 182.54396 * 15 14 11 17 17 C 1.55025 * 101.53245 * 83.93896 * 16 15 14 18 18 N 1.47486 * 104.89909 * 36.37540 * 17 16 15 19 19 C 1.36932 * 125.66543 * 156.00246 * 18 17 16 20 20 H 1.07999 * 120.00110 * 179.97438 * 19 18 17 21 21 C 1.38813 * 119.99901 * 359.97438 * 19 18 17 22 22 N 1.31614 * 119.99934 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99828 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47091 * 59.99581 * 23 21 19 25 25 H 1.48500 * 109.47093 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46903 * 299.99764 * 23 21 19 27 27 C 1.47188 * 108.67125 * 335.98096 * 18 17 16 28 28 C 1.47297 * 121.06347 * 174.96153 * 9 7 3 29 29 H 1.09000 * 109.46949 * 60.00374 * 1 2 3 30 30 H 1.09005 * 109.46673 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47115 * 299.99734 * 1 2 3 32 32 H 1.08996 * 109.47599 * 240.00317 * 2 1 3 33 33 H 1.09002 * 109.47420 * 120.00222 * 2 1 3 34 34 H 1.09001 * 109.46918 * 289.86133 * 4 3 2 35 35 H 1.08996 * 109.47217 * 49.85294 * 4 3 2 36 36 H 1.08999 * 109.47448 * 169.86120 * 4 3 2 37 37 H 1.08996 * 109.46725 * 59.99935 * 5 3 2 38 38 H 1.09002 * 109.46410 * 179.97438 * 5 3 2 39 39 H 1.08999 * 109.47693 * 300.00194 * 6 5 3 40 40 H 1.08998 * 109.47079 * 60.00294 * 6 5 3 41 41 H 1.08997 * 109.47063 * 179.97438 * 6 5 3 42 42 H 1.08998 * 109.63582 * 9.06317 * 10 9 7 43 43 H 1.08999 * 109.63465 * 248.46372 * 10 9 7 44 44 H 1.08992 * 109.47158 * 59.99850 * 13 11 10 45 45 H 1.08993 * 109.46902 * 180.02562 * 13 11 10 46 46 H 1.09004 * 109.46904 * 300.00263 * 13 11 10 47 47 H 1.08998 * 111.01476 * 201.99821 * 16 15 14 48 48 H 1.08996 * 111.01792 * 325.87254 * 16 15 14 49 49 H 1.08998 * 110.35191 * 155.22776 * 17 16 15 50 50 H 1.08997 * 110.35420 * 277.52152 * 17 16 15 51 51 H 0.97004 * 119.99943 * 179.97438 * 22 21 19 52 52 H 1.09000 * 109.91043 * 242.14055 * 27 18 17 53 53 H 1.08997 * 109.90905 * 120.87771 * 27 18 17 54 54 H 1.08993 * 109.64258 * 109.66762 * 28 9 7 55 55 H 1.09000 * 109.63335 * 349.05919 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5633 1.4450 -0.1428 5 6 1.4167 2.2038 -1.1718 6 6 1.8068 1.5250 -2.4862 7 6 1.6557 2.1111 1.2948 8 8 0.9401 3.0903 1.2825 9 7 2.1072 1.6210 2.4662 10 6 2.8854 0.3730 2.5177 11 6 4.1673 0.6319 3.3176 12 1 4.8070 1.3214 2.7668 13 6 4.9084 -0.6885 3.5369 14 8 3.8248 1.2039 4.5837 15 6 3.1504 2.4514 4.5010 16 6 2.8835 3.0121 5.9160 17 6 4.2302 3.7123 6.2311 18 7 4.6721 4.2810 4.9440 19 6 5.5227 5.3430 4.7904 20 1 5.7865 5.6848 3.8005 21 6 6.0459 5.9803 5.9071 22 7 5.7241 5.5641 7.1135 23 14 7.2069 7.4287 5.6975 24 1 6.5157 8.5138 4.9561 25 1 7.6210 7.9284 7.0332 26 1 8.4064 6.9956 4.9368 27 6 4.0475 3.5169 3.8520 28 6 1.8380 2.3176 3.7358 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5137 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 4.0147 1.0647 0.7735 35 1 3.8507 0.8093 -0.9803 36 1 3.9097 2.4626 -0.3234 37 1 0.3315 2.2021 -1.0700 38 1 1.7797 3.2316 -1.1714 39 1 2.8920 1.5267 -2.5879 40 1 1.4435 0.4974 -2.4862 41 1 1.3624 2.0670 -3.3209 42 1 3.1423 0.0595 1.5058 43 1 2.2989 -0.4044 3.0073 44 1 5.1648 -1.1259 2.5720 45 1 5.8193 -0.5037 4.1060 46 1 4.2686 -1.3769 4.0892 47 1 2.0633 3.7299 5.9037 48 1 2.6861 2.2076 6.6245 49 1 4.0829 4.5047 6.9649 50 1 4.9583 2.9876 6.5953 51 1 6.0900 6.0092 7.8938 52 1 4.8169 3.0363 3.2478 53 1 3.4456 4.1808 3.2315 54 1 1.1266 1.7406 4.3266 55 1 1.4306 3.3077 3.5311 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071243981.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:41 Heat of formation + Delta-G solvation = -60.496834 kcal Electronic energy + Delta-G solvation = -33114.534054 eV Core-core repulsion = 29152.093028 eV Total energy + Delta-G solvation = -3962.441025 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.33862 -40.61043 -38.05262 -37.79804 -35.91170 -34.87098 -33.02805 -32.12888 -31.16775 -30.92629 -29.67372 -27.78313 -27.47066 -26.07037 -25.25278 -24.35741 -23.10916 -22.28144 -21.87099 -20.33543 -19.69107 -19.03679 -18.01594 -17.65216 -17.43462 -16.87387 -16.68552 -16.24378 -15.97572 -15.67310 -15.65597 -15.30145 -15.02740 -14.81023 -14.47274 -14.16665 -13.97194 -13.84201 -13.62087 -13.60973 -13.43623 -13.29016 -13.06092 -13.05254 -12.87436 -12.80876 -12.72451 -12.59926 -12.39645 -12.30420 -12.19155 -12.09756 -12.02521 -11.94970 -11.86473 -11.74204 -11.53693 -11.44589 -11.14089 -10.94034 -10.78976 -10.47729 -9.55490 -8.96847 -7.82484 -5.28209 1.42180 1.46096 1.52721 1.55228 1.82389 2.44574 2.57794 3.25731 3.30374 3.47049 3.57906 3.63592 3.72679 3.81347 3.83985 3.93847 4.04682 4.05749 4.11173 4.33172 4.35065 4.40013 4.46230 4.50677 4.51037 4.56395 4.57980 4.63575 4.67574 4.70005 4.76477 4.80348 4.88999 4.89638 4.93681 4.97335 5.01190 5.06088 5.07280 5.13473 5.21986 5.25948 5.28450 5.30436 5.34311 5.37370 5.37622 5.56405 5.59097 5.73999 6.23472 6.29963 6.32958 7.04568 7.08348 7.69719 8.34674 9.19227 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014804 B = 0.003579 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.913035 B = 7822.208916 C = 8494.388186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.072 4.072 4 C -0.158 4.158 5 C -0.101 4.101 6 C -0.147 4.147 7 C 0.520 3.480 8 O -0.586 6.586 9 N -0.611 5.611 10 C 0.063 3.937 11 C 0.056 3.944 12 H 0.047 0.953 13 C -0.135 4.135 14 O -0.369 6.369 15 C 0.112 3.888 16 C -0.119 4.119 17 C 0.163 3.837 18 N -0.621 5.621 19 C -0.249 4.249 20 H 0.073 0.927 21 C -0.060 4.060 22 N -0.945 5.945 23 Si 0.982 3.018 24 H -0.278 1.278 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.126 3.874 28 C 0.106 3.894 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.025 0.975 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.043 0.957 37 H 0.060 0.940 38 H 0.039 0.961 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.144 0.856 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.051 0.949 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.096 0.904 49 H 0.077 0.923 50 H -0.012 1.012 51 H 0.250 0.750 52 H 0.020 0.980 53 H 0.011 0.989 54 H 0.093 0.907 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.965 -19.234 -16.261 26.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.075 4.075 4 C -0.215 4.215 5 C -0.139 4.139 6 C -0.204 4.204 7 C 0.310 3.690 8 O -0.465 6.465 9 N -0.343 5.343 10 C -0.058 4.058 11 C -0.002 4.002 12 H 0.065 0.935 13 C -0.193 4.193 14 O -0.289 6.289 15 C 0.071 3.929 16 C -0.158 4.158 17 C 0.038 3.962 18 N -0.348 5.348 19 C -0.378 4.378 20 H 0.091 0.909 21 C -0.253 4.253 22 N -0.594 5.594 23 Si 0.810 3.190 24 H -0.204 1.204 25 H -0.213 1.213 26 H -0.203 1.203 27 C 0.001 3.999 28 C -0.017 4.017 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.044 0.956 32 H 0.127 0.873 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.161 0.839 43 H 0.116 0.884 44 H 0.125 0.875 45 H 0.070 0.930 46 H 0.096 0.904 47 H 0.101 0.899 48 H 0.114 0.886 49 H 0.095 0.905 50 H 0.006 0.994 51 H 0.060 0.940 52 H 0.038 0.962 53 H 0.029 0.971 54 H 0.111 0.889 55 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.184 -18.668 -15.981 25.901 hybrid contribution 0.659 1.750 0.310 1.895 sum -7.525 -16.919 -15.672 24.258 Atomic orbital electron populations 1.21851 0.95787 1.02470 1.01133 1.22079 0.96438 0.92208 1.05437 1.20894 0.98108 0.97927 0.90564 1.22279 0.91683 1.03063 1.04433 1.21388 1.00412 0.98050 0.94028 1.21851 1.02295 1.01379 0.94863 1.21390 0.78366 0.83243 0.85954 1.90659 1.39149 1.29103 1.87630 1.48226 1.54451 1.25719 1.05914 1.23335 0.92204 0.85735 1.04525 1.22846 0.95538 0.96754 0.85073 0.93534 1.21740 0.99890 0.93309 1.04342 1.87841 1.77104 1.34046 1.29870 1.21964 0.90622 0.83731 0.96578 1.22867 0.98882 0.99801 0.94207 1.21678 0.90478 0.95161 0.88837 1.44783 1.53677 1.34374 1.01933 1.19349 1.19582 1.05766 0.93089 0.90926 1.25637 1.02379 1.02453 0.94837 1.70030 1.48448 1.43596 0.97315 0.85107 0.78538 0.78785 0.76611 1.20416 1.21280 1.20336 1.21761 0.94384 0.92540 0.91256 1.21960 0.96039 0.98942 0.84800 0.92073 0.90476 0.95552 0.87338 0.89254 0.91109 0.87549 0.93755 0.92154 0.94206 0.91506 0.90497 0.92410 0.83922 0.88369 0.87452 0.92993 0.90402 0.89892 0.88566 0.90538 0.99353 0.94025 0.96244 0.97134 0.88855 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.22 71.98 0.66 -1.62 16 2 C -0.12 -1.55 4.10 30.59 0.13 -1.43 16 3 C -0.07 -1.40 0.30 -52.92 -0.02 -1.41 16 4 C -0.16 -2.67 7.43 71.98 0.54 -2.14 16 5 C -0.10 -2.06 3.75 30.59 0.11 -1.94 16 6 C -0.15 -1.86 9.21 71.98 0.66 -1.20 16 7 C 0.52 15.15 5.51 87.66 0.48 15.63 16 8 O -0.59 -22.49 15.49 -3.06 -0.05 -22.54 16 9 N -0.61 -16.69 2.94 -818.46 -2.41 -19.10 16 10 C 0.06 1.23 3.41 86.35 0.29 1.53 16 11 C 0.06 1.42 2.92 30.69 0.09 1.51 16 12 H 0.05 1.38 5.71 -2.39 -0.01 1.37 16 13 C -0.14 -2.42 9.57 71.98 0.69 -1.73 16 14 O -0.37 -12.76 9.89 -148.97 -1.47 -14.24 16 15 C 0.11 4.20 0.81 -10.21 -0.01 4.20 16 16 C -0.12 -4.75 6.21 31.81 0.20 -4.56 16 17 C 0.16 8.57 5.89 86.88 0.51 9.08 16 18 N -0.62 -34.61 3.40 -692.48 -2.36 -36.97 16 19 C -0.25 -14.89 10.28 84.03 0.86 -14.03 16 20 H 0.07 4.22 7.83 -2.91 -0.02 4.20 16 21 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 22 N -0.95 -57.85 10.09 21.65 0.22 -57.63 16 23 Si 0.98 47.17 29.55 68.60 2.03 49.19 16 24 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 27 C 0.13 5.87 6.34 86.47 0.55 6.41 16 28 C 0.11 3.43 5.18 86.06 0.45 3.88 16 29 H 0.06 0.91 6.33 -2.39 -0.02 0.90 16 30 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.03 0.53 7.40 -2.39 -0.02 0.51 16 32 H 0.11 0.76 6.71 -2.39 -0.02 0.74 16 33 H 0.09 0.94 4.61 -2.39 -0.01 0.93 16 34 H 0.07 1.20 4.20 -2.39 -0.01 1.19 16 35 H 0.11 1.07 6.95 -2.39 -0.02 1.05 16 36 H 0.04 0.95 8.11 -2.39 -0.02 0.93 16 37 H 0.06 1.36 6.29 -2.39 -0.02 1.35 16 38 H 0.04 1.02 8.11 -2.39 -0.02 1.00 16 39 H 0.07 0.74 6.67 -2.39 -0.02 0.73 16 40 H 0.08 0.69 6.56 -2.39 -0.02 0.68 16 41 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.14 1.93 2.83 -2.39 -0.01 1.92 16 43 H 0.10 1.56 8.12 -2.39 -0.02 1.54 16 44 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 47 H 0.08 3.18 8.01 -2.39 -0.02 3.16 16 48 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 49 H 0.08 4.48 5.88 -2.39 -0.01 4.47 16 50 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 51 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 52 H 0.02 0.92 6.03 -2.39 -0.01 0.91 16 53 H 0.01 0.53 7.61 -2.39 -0.02 0.51 16 54 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 55 H 0.08 2.88 6.86 -2.39 -0.02 2.86 16 Total: -1.00 -77.90 392.60 3.51 -74.39 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.88 Total: 17.79 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 6.67 Total: 9.09 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -4.54 Total: -113.70 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -1.52 Total: -36.78 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.19 kcal Total: -77.90 3.51 -74.39 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071243981.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.897 kcal (2) G-P(sol) polarization free energy of solvation -77.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds