Wall clock time and date at job start Tue Mar 31 2020 20:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46926 * 2 1 4 4 C 1.52999 * 109.46800 * 119.99784 * 2 1 3 5 5 C 1.53001 * 109.47148 * 53.02057 * 4 2 1 6 6 C 1.53000 * 109.47520 * 293.01630 * 4 2 1 7 7 C 1.50706 * 109.46895 * 173.01630 * 4 2 1 8 8 O 1.21287 * 119.99528 * 112.56132 * 7 4 2 9 9 N 1.34771 * 120.00317 * 292.56042 * 7 4 2 10 10 C 1.46921 * 120.63327 * 185.58373 * 9 7 4 11 11 C 1.53191 * 108.77761 * 233.63587 * 10 9 7 12 12 C 1.53047 * 109.31155 * 305.36094 * 11 10 9 13 13 O 1.42896 * 109.46138 * 181.38526 * 12 11 10 14 14 C 1.42889 * 114.00314 * 149.97460 * 13 12 11 15 15 C 1.53498 * 114.21135 * 150.00023 * 14 13 12 16 16 N 1.47065 * 87.98250 * 87.52209 * 15 14 13 17 17 C 1.36944 * 136.05212 * 206.86166 * 16 15 14 18 18 H 1.07997 * 120.00411 * 356.11704 * 17 16 15 19 19 C 1.38819 * 119.99400 * 176.11700 * 17 16 15 20 20 N 1.31617 * 120.00038 * 6.27066 * 19 17 16 21 21 Si 1.86800 * 119.99672 * 186.27004 * 19 17 16 22 22 H 1.48499 * 109.47071 * 94.98059 * 21 19 17 23 23 H 1.48495 * 109.47063 * 214.98661 * 21 19 17 24 24 H 1.48507 * 109.47138 * 334.98483 * 21 19 17 25 25 C 1.47061 * 87.88819 * 27.12254 * 16 15 14 26 26 C 1.53044 * 109.52329 * 61.37535 * 12 11 10 27 27 C 1.46924 * 120.62967 * 5.61126 * 9 7 4 28 28 H 1.09002 * 109.47336 * 299.99965 * 1 2 3 29 29 H 1.08996 * 109.46629 * 60.00327 * 1 2 3 30 30 H 1.09003 * 109.46565 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47473 * 239.99973 * 2 1 3 32 32 H 1.08997 * 109.47165 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47178 * 300.00096 * 3 2 1 34 34 H 1.09002 * 109.47084 * 59.99881 * 3 2 1 35 35 H 1.09009 * 109.47076 * 172.01459 * 5 4 2 36 36 H 1.08996 * 109.46941 * 292.01351 * 5 4 2 37 37 H 1.08996 * 109.47442 * 52.02040 * 5 4 2 38 38 H 1.08991 * 109.46967 * 302.74739 * 6 4 2 39 39 H 1.09001 * 109.46468 * 62.74878 * 6 4 2 40 40 H 1.09000 * 109.47188 * 182.74160 * 6 4 2 41 41 H 1.08997 * 109.58857 * 113.84507 * 10 9 7 42 42 H 1.09000 * 109.70479 * 353.48842 * 10 9 7 43 43 H 1.09002 * 109.50031 * 185.41283 * 11 10 9 44 44 H 1.08995 * 109.50076 * 65.31716 * 11 10 9 45 45 H 1.08994 * 109.46325 * 301.36089 * 12 11 10 46 46 H 1.09000 * 113.28331 * 16.93431 * 14 13 12 47 47 H 1.08997 * 113.46376 * 332.74375 * 15 14 13 48 48 H 1.08999 * 113.52328 * 202.30964 * 15 14 13 49 49 H 0.96996 * 119.99438 * 180.02562 * 20 19 17 50 50 H 1.09005 * 113.46763 * 87.65486 * 25 16 15 51 51 H 1.08997 * 113.47127 * 218.09656 * 25 16 15 52 52 H 1.09002 * 109.49950 * 58.57809 * 26 12 11 53 53 H 1.09003 * 109.49700 * 178.67521 * 26 12 11 54 54 H 1.08994 * 109.58860 * 246.15538 * 27 9 7 55 55 H 1.09003 * 109.58533 * 6.43846 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.3918 -2.1042 1.3400 6 6 1.6782 0.0941 2.4924 7 6 3.5371 -0.8726 1.1660 8 8 4.2516 -0.2672 1.9367 9 7 4.0820 -1.6807 0.2351 10 6 5.5291 -1.9341 0.2184 11 6 6.0697 -1.6135 -1.1786 12 6 5.2803 -2.4082 -2.2216 13 8 5.8032 -2.1361 -3.5233 14 6 5.6691 -3.2220 -4.4422 15 6 5.5220 -2.7916 -5.9083 16 7 6.9897 -2.7902 -6.0009 17 6 7.9294 -2.1392 -6.7549 18 1 7.6197 -1.4698 -7.5438 19 6 9.2801 -2.3399 -6.5052 20 7 9.6599 -3.2462 -5.6296 21 14 10.5585 -1.3235 -7.4119 22 1 10.9412 -0.1538 -6.5810 23 1 11.7585 -2.1578 -7.6749 24 1 9.9921 -0.8510 -8.7008 25 6 7.0038 -3.8004 -4.9323 26 6 3.8065 -1.9991 -2.1684 27 6 3.2402 -2.3244 -0.7826 28 1 -0.3634 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.8577 -2.6716 2.1458 36 1 0.3265 -1.9936 1.5423 37 1 1.5297 -2.6327 0.3968 38 1 2.0994 1.0956 2.4051 39 1 0.5938 0.1622 2.5792 40 1 2.0837 -0.3947 3.3782 41 1 5.7193 -2.9816 0.4523 42 1 6.0218 -1.2999 0.9553 43 1 7.1232 -1.8881 -1.2330 44 1 5.9607 -0.5469 -1.3750 45 1 5.3693 -3.4737 -2.0099 46 1 4.9449 -3.9709 -4.1215 47 1 5.0785 -1.8031 -6.0279 48 1 5.0480 -3.5450 -6.5374 49 1 10.6037 -3.3861 -5.4550 50 1 6.9245 -4.8232 -5.3007 51 1 7.8203 -3.6697 -4.2221 52 1 3.7191 -0.9288 -2.3553 53 1 3.2490 -2.5481 -2.9272 54 1 3.2437 -3.4036 -0.6304 55 1 2.2203 -1.9477 -0.7048 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093537163.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:51 Heat of formation + Delta-G solvation = -34.230044 kcal Electronic energy + Delta-G solvation = -31684.903417 eV Core-core repulsion = 27723.601405 eV Total energy + Delta-G solvation = -3961.302012 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.07215 -40.41239 -38.85168 -38.02735 -36.70268 -34.17315 -33.01225 -32.18235 -31.95008 -29.54677 -28.97366 -27.47160 -26.42978 -26.29761 -25.07732 -24.68201 -23.98775 -22.10712 -21.21797 -20.80010 -19.72712 -18.82431 -17.77990 -17.48339 -17.16721 -16.94564 -16.59237 -15.99695 -15.86734 -15.70080 -15.40193 -15.32436 -15.05164 -14.94049 -14.67053 -14.42595 -14.01864 -13.88835 -13.66213 -13.50625 -13.34060 -13.21941 -13.12303 -13.00787 -12.89688 -12.82663 -12.70290 -12.51074 -12.48481 -12.25062 -12.20602 -12.03140 -12.00341 -11.84429 -11.63375 -11.48858 -11.46513 -11.26022 -10.97670 -10.86418 -10.52954 -10.11330 -9.72055 -8.89755 -7.90663 -5.21096 1.41740 1.45402 1.53096 1.60136 1.97492 2.46632 2.68451 3.32587 3.37022 3.50807 3.64875 3.69691 3.79277 3.83670 3.88206 4.01557 4.10484 4.18453 4.26283 4.28355 4.28441 4.37504 4.43057 4.47903 4.52803 4.63353 4.72727 4.77858 4.79471 4.82075 4.82275 4.84536 4.90718 4.93207 4.96482 4.98952 5.01633 5.07504 5.11851 5.14444 5.17106 5.18000 5.21155 5.29620 5.34631 5.37518 5.46601 5.52536 5.54533 5.58608 5.96446 6.40208 6.61972 6.92072 7.15545 7.61551 8.63161 9.27449 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019622 B = 0.002505 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.594699 B =11174.315644 C =11398.835875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.152 4.152 4 C -0.073 4.073 5 C -0.158 4.158 6 C -0.129 4.129 7 C 0.519 3.481 8 O -0.588 6.588 9 N -0.608 5.608 10 C 0.121 3.879 11 C -0.126 4.126 12 C 0.085 3.915 13 O -0.374 6.374 14 C 0.065 3.935 15 C 0.113 3.887 16 N -0.640 5.640 17 C -0.225 4.225 18 H 0.081 0.919 19 C -0.070 4.070 20 N -0.952 5.952 21 Si 0.977 3.023 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.265 1.265 25 C 0.126 3.874 26 C -0.150 4.150 27 C 0.088 3.912 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.022 0.978 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.049 0.951 45 H 0.077 0.923 46 H 0.115 0.885 47 H 0.046 0.954 48 H 0.071 0.929 49 H 0.246 0.754 50 H 0.033 0.967 51 H 0.034 0.966 52 H 0.058 0.942 53 H 0.102 0.898 54 H 0.097 0.903 55 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.053 0.134 15.256 29.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.209 4.209 4 C -0.076 4.076 5 C -0.214 4.214 6 C -0.186 4.186 7 C 0.309 3.691 8 O -0.469 6.469 9 N -0.340 5.340 10 C -0.002 4.002 11 C -0.164 4.164 12 C 0.028 3.972 13 O -0.293 6.293 14 C 0.006 3.994 15 C -0.012 4.012 16 N -0.366 5.366 17 C -0.353 4.353 18 H 0.099 0.901 19 C -0.262 4.262 20 N -0.601 5.601 21 Si 0.805 3.195 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.190 1.190 25 C 0.000 4.000 26 C -0.188 4.188 27 C -0.032 4.032 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.133 0.867 47 H 0.065 0.935 48 H 0.088 0.912 49 H 0.055 0.945 50 H 0.050 0.950 51 H 0.052 0.948 52 H 0.077 0.923 53 H 0.120 0.880 54 H 0.115 0.885 55 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -24.283 0.725 15.480 28.807 hybrid contribution 1.883 0.451 -0.572 2.019 sum -22.399 1.176 14.908 26.933 Atomic orbital electron populations 1.21934 0.92075 1.03542 1.02707 1.21435 0.98296 0.95511 0.95934 1.21941 0.99326 0.97046 1.02636 1.20868 0.88903 0.99294 0.98514 1.22369 1.02327 0.92874 1.03847 1.21758 1.02358 0.99347 0.95123 1.21313 0.91839 0.76846 0.79055 1.90653 1.64524 1.47493 1.44193 1.48199 1.07821 1.47392 1.30617 1.21460 0.80753 1.02195 0.95747 1.21880 1.00094 1.00248 0.94193 1.22263 0.93271 0.99253 0.82452 1.88024 1.81597 1.38215 1.21418 1.23599 0.96747 0.89257 0.89747 1.22885 0.85163 0.99673 0.93526 1.45818 1.01924 1.45548 1.43338 1.19300 0.86445 1.18705 1.10894 0.90097 1.25620 0.98719 1.00719 1.01186 1.70025 1.14566 1.36330 1.39202 0.85083 0.78536 0.77697 0.78195 1.21831 1.21856 1.18990 1.22681 0.95882 0.91399 0.90026 1.22448 0.95392 1.02669 0.98277 1.22682 0.96138 0.99411 0.85016 0.91798 0.91889 0.90231 0.89489 0.95832 0.91605 0.91619 0.92791 0.88833 0.89233 0.93171 0.89271 0.93558 0.89251 0.90507 0.91557 0.93197 0.90529 0.86737 0.93524 0.91198 0.94480 0.94952 0.94760 0.92277 0.87997 0.88511 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.45 71.98 0.61 -0.50 16 2 C -0.09 -1.21 1.94 -10.79 -0.02 -1.23 16 3 C -0.15 -2.64 8.48 71.98 0.61 -2.03 16 4 C -0.07 -1.10 0.31 -52.93 -0.02 -1.11 16 5 C -0.16 -1.44 7.17 71.98 0.52 -0.92 16 6 C -0.13 -2.03 7.04 71.98 0.51 -1.53 16 7 C 0.52 12.14 5.55 87.66 0.49 12.63 16 8 O -0.59 -19.06 15.43 -3.05 -0.05 -19.11 16 9 N -0.61 -12.53 2.96 -818.92 -2.42 -14.96 16 10 C 0.12 2.88 6.44 86.36 0.56 3.44 16 11 C -0.13 -3.59 5.73 30.67 0.18 -3.42 16 12 C 0.09 2.26 2.46 30.62 0.08 2.34 16 13 O -0.37 -14.08 10.04 -148.98 -1.50 -15.58 16 14 C 0.07 2.33 4.50 30.93 0.14 2.47 16 15 C 0.11 4.50 8.52 83.18 0.71 5.20 16 16 N -0.64 -34.23 3.78 -739.06 -2.79 -37.03 16 17 C -0.23 -13.31 10.74 84.03 0.90 -12.41 16 18 H 0.08 4.59 7.84 -2.91 -0.02 4.56 16 19 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 20 N -0.95 -59.97 11.52 21.65 0.25 -59.72 16 21 Si 0.98 47.92 29.56 68.60 2.03 49.95 16 22 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 23 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 C 0.13 6.07 7.27 83.18 0.61 6.67 16 26 C -0.15 -2.82 5.55 30.67 0.17 -2.65 16 27 C 0.09 1.22 4.02 86.36 0.35 1.56 16 28 H 0.06 0.45 6.69 -2.39 -0.02 0.44 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.08 0.34 6.51 -2.39 -0.02 0.32 16 31 H 0.09 1.11 4.94 -2.39 -0.01 1.10 16 32 H 0.02 0.55 7.45 -2.39 -0.02 0.53 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 1.07 6.26 -2.39 -0.01 1.06 16 35 H 0.05 0.60 8.13 -2.38 -0.02 0.58 16 36 H 0.09 0.48 6.82 -2.39 -0.02 0.46 16 37 H 0.09 0.56 4.62 -2.39 -0.01 0.55 16 38 H 0.05 0.97 6.11 -2.39 -0.01 0.95 16 39 H 0.09 0.90 6.76 -2.39 -0.02 0.88 16 40 H 0.05 0.84 8.12 -2.39 -0.02 0.82 16 41 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.08 2.13 7.01 -2.39 -0.02 2.11 16 43 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.08 1.78 7.71 -2.39 -0.02 1.76 16 46 H 0.12 2.91 7.76 -2.39 -0.02 2.89 16 47 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 49 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 50 H 0.03 1.52 8.14 -2.38 -0.02 1.51 16 51 H 0.03 1.91 7.10 -2.39 -0.02 1.90 16 52 H 0.06 1.33 8.09 -2.39 -0.02 1.31 16 53 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 54 H 0.10 0.93 8.11 -2.39 -0.02 0.91 16 55 H 0.13 1.27 2.49 -2.39 -0.01 1.26 16 Total: -1.00 -80.60 404.35 3.22 -77.38 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.86 Total: 14.25 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 6.84 Total: 4.82 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -4.97 Total: -111.71 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -1.54 Total: -34.68 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.95 kcal Total: -80.60 3.22 -77.38 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093537163.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.148 kcal (2) G-P(sol) polarization free energy of solvation -80.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds