Wall clock time and date at job start Tue Mar 31 2020 23:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47385 * 2 1 4 4 C 1.52994 * 109.47397 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47397 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47397 * 179.97438 * 5 4 3 7 7 O 1.42906 * 109.47189 * 180.02562 * 6 5 4 8 8 C 1.42897 * 113.99944 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47342 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99637 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00448 * 179.97438 * 9 8 7 12 12 C 1.48243 * 126.41179 * 359.69398 * 11 9 8 13 13 C 1.53741 * 105.90137 * 211.08774 * 12 11 9 14 14 H 1.08995 * 112.28557 * 104.65677 * 13 12 11 15 15 C 1.54451 * 109.01299 * 229.74989 * 13 12 11 16 16 N 1.48340 * 104.32678 * 137.92497 * 15 13 12 17 17 C 1.36928 * 128.19859 * 138.19257 * 16 15 13 18 18 H 1.08003 * 120.00173 * 344.10692 * 17 16 15 19 19 C 1.38809 * 120.00272 * 164.11334 * 17 16 15 20 20 N 1.31626 * 119.99745 * 350.53263 * 19 17 16 21 21 Si 1.86805 * 120.00592 * 170.53053 * 19 17 16 22 22 H 1.48501 * 109.47032 * 89.99630 * 21 19 17 23 23 H 1.48493 * 109.47069 * 210.00084 * 21 19 17 24 24 H 1.48506 * 109.46824 * 329.99946 * 21 19 17 25 25 C 1.48336 * 103.60004 * 318.19458 * 16 15 13 26 26 C 1.54454 * 104.32555 * 41.80587 * 25 16 15 27 27 C 1.52994 * 112.30201 * 96.98516 * 26 25 16 28 28 C 1.47192 * 126.70346 * 180.02562 * 11 9 8 29 29 H 1.08996 * 109.46944 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47136 * 299.99979 * 1 2 3 31 31 H 1.09004 * 109.46557 * 60.00156 * 1 2 3 32 32 H 1.09000 * 109.47136 * 240.00021 * 2 1 3 33 33 H 1.08997 * 109.47211 * 119.99845 * 2 1 3 34 34 H 1.09004 * 109.46721 * 59.99479 * 3 2 1 35 35 H 1.09006 * 109.46924 * 299.99963 * 3 2 1 36 36 H 1.09000 * 109.47106 * 60.00033 * 4 3 2 37 37 H 1.08997 * 109.47230 * 299.99864 * 4 3 2 38 38 H 1.09000 * 109.46966 * 59.99947 * 5 4 3 39 39 H 1.09006 * 109.47389 * 300.00250 * 5 4 3 40 40 H 1.09000 * 109.47106 * 60.00033 * 6 5 4 41 41 H 1.09006 * 109.47079 * 299.99899 * 6 5 4 42 42 H 1.09000 * 109.47174 * 59.99996 * 8 7 6 43 43 H 1.08995 * 109.47418 * 300.00170 * 8 7 6 44 44 H 1.08999 * 109.59270 * 92.39771 * 12 11 9 45 45 H 1.08996 * 111.04849 * 330.55277 * 12 11 9 46 46 H 1.09004 * 110.46823 * 256.63811 * 15 13 12 47 47 H 1.09004 * 110.46490 * 19.08858 * 15 13 12 48 48 H 0.97000 * 120.00038 * 180.02562 * 20 19 17 49 49 H 1.08998 * 110.45769 * 160.51684 * 25 16 15 50 50 H 1.08993 * 110.45926 * 282.96543 * 25 16 15 51 51 H 1.09001 * 109.47357 * 302.35065 * 27 26 25 52 52 H 1.09002 * 109.46969 * 62.34802 * 27 26 25 53 53 H 1.08989 * 109.47550 * 182.34888 * 27 26 25 54 54 H 1.08998 * 110.06467 * 29.38480 * 28 11 9 55 55 H 1.09007 * 110.06388 * 267.86924 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6100 2.8849 0.0013 7 8 6.0864 4.2323 0.0013 8 6 7.5109 4.3451 0.0030 9 6 7.8996 5.8011 0.0022 10 8 7.0411 6.6578 0.0008 11 7 9.2011 6.1512 0.0041 12 6 10.3607 5.2278 0.0135 13 6 11.4766 5.9607 0.7759 14 1 11.6150 5.5688 1.7835 15 6 12.7757 5.9056 -0.0578 16 7 13.3501 7.2675 0.0673 17 6 14.6596 7.6201 0.2566 18 1 15.3755 6.8816 0.5861 19 6 15.0672 8.9266 0.0250 20 7 14.2467 9.7795 -0.5511 21 14 16.7799 9.4746 0.5309 22 1 17.7250 9.2438 -0.5911 23 1 16.7572 10.9202 0.8697 24 1 17.2190 8.6952 1.7162 25 6 12.1700 8.1570 -0.0610 26 6 11.0733 7.4599 0.7738 27 6 10.9643 8.0368 2.1866 28 6 9.7440 7.5194 0.0042 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.9337 0.9285 -0.8891 37 1 3.9330 0.9288 0.8908 38 1 3.7164 3.3993 0.8895 39 1 3.7171 3.3983 -0.8904 40 1 5.9741 2.3704 -0.8880 41 1 5.9726 2.3717 0.8920 42 1 7.9148 3.8611 -0.8862 43 1 7.9126 3.8619 0.8937 44 1 10.6766 5.0274 -1.0103 45 1 10.1136 4.2941 0.5186 46 1 13.4608 5.1639 0.3527 47 1 12.5503 5.6793 -1.1000 48 1 14.5316 10.6925 -0.7134 49 1 12.3903 9.1435 0.3471 50 1 11.8647 8.2367 -1.1043 51 1 11.9267 7.9481 2.6906 52 1 10.6798 9.0875 2.1290 53 1 10.2088 7.4860 2.7467 54 1 9.0519 8.1963 0.5051 55 1 9.9190 7.8524 -1.0189 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101446141.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:29 Heat of formation + Delta-G solvation = -91.960995 kcal Electronic energy + Delta-G solvation = -29420.555781 eV Core-core repulsion = 25456.750368 eV Total energy + Delta-G solvation = -3963.805414 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.55519 -39.97050 -38.67464 -37.01383 -36.51425 -34.29326 -33.71266 -32.97139 -31.20373 -30.12365 -28.66788 -27.95083 -26.69275 -26.43150 -24.59876 -23.91212 -22.17961 -22.12830 -21.83908 -20.47478 -19.85968 -18.75136 -18.19915 -17.62820 -17.21529 -16.91050 -16.65028 -16.59432 -16.19485 -15.81346 -15.42658 -15.31447 -15.08356 -14.85771 -14.53780 -14.22335 -14.11453 -13.99858 -13.62802 -13.57050 -13.46184 -13.25822 -13.11823 -13.00998 -12.76551 -12.70308 -12.48250 -12.45408 -12.36038 -12.21032 -11.88940 -11.76563 -11.71828 -11.68668 -11.53723 -11.48990 -11.45293 -11.34235 -11.28008 -10.82178 -10.70158 -10.64989 -9.75613 -8.84061 -7.87127 -5.22571 1.48112 1.49407 1.53069 1.58315 1.65159 2.51034 2.83379 3.32746 3.36021 3.53449 3.70815 3.94760 3.95810 3.97680 3.98138 4.11598 4.17102 4.19632 4.21116 4.27144 4.31892 4.39645 4.41397 4.48888 4.53848 4.55020 4.63799 4.67135 4.75316 4.82509 4.84601 4.89329 4.93375 4.93718 4.96299 5.03112 5.09197 5.10500 5.20751 5.22000 5.22577 5.25806 5.28643 5.38369 5.47269 5.48556 5.49471 5.53586 5.56467 5.74618 6.13538 6.22779 6.51482 7.04415 7.09265 7.73351 8.52891 9.26096 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.040993 B = 0.001590 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.875630 B =17602.935535 C =17918.759935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.109 4.109 5 C -0.119 4.119 6 C 0.056 3.944 7 O -0.401 6.401 8 C 0.057 3.943 9 C 0.522 3.478 10 O -0.582 6.582 11 N -0.612 5.612 12 C 0.109 3.891 13 C -0.099 4.099 14 H 0.103 0.897 15 C 0.128 3.872 16 N -0.618 5.618 17 C -0.232 4.232 18 H 0.083 0.917 19 C -0.061 4.061 20 N -0.947 5.947 21 Si 0.972 3.028 22 H -0.287 1.287 23 H -0.298 1.298 24 H -0.267 1.267 25 C 0.175 3.825 26 C -0.087 4.087 27 C -0.110 4.110 28 C 0.126 3.874 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.082 0.918 45 H 0.120 0.880 46 H 0.062 0.938 47 H 0.032 0.968 48 H 0.247 0.753 49 H 0.052 0.948 50 H -0.001 1.001 51 H 0.049 0.951 52 H 0.046 0.954 53 H 0.064 0.936 54 H 0.065 0.935 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.575 -21.987 2.906 29.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C -0.159 4.159 4 C -0.147 4.147 5 C -0.156 4.156 6 C -0.019 4.019 7 O -0.321 6.321 8 C -0.022 4.022 9 C 0.312 3.688 10 O -0.461 6.461 11 N -0.346 5.346 12 C -0.012 4.012 13 C -0.119 4.119 14 H 0.122 0.878 15 C 0.003 3.997 16 N -0.341 5.341 17 C -0.361 4.361 18 H 0.101 0.899 19 C -0.255 4.255 20 N -0.596 5.596 21 Si 0.801 3.199 22 H -0.214 1.214 23 H -0.224 1.224 24 H -0.192 1.192 25 C 0.049 3.951 26 C -0.089 4.089 27 C -0.167 4.167 28 C 0.002 3.998 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.100 0.900 45 H 0.138 0.862 46 H 0.080 0.920 47 H 0.049 0.951 48 H 0.056 0.944 49 H 0.071 0.929 50 H 0.017 0.983 51 H 0.068 0.932 52 H 0.065 0.935 53 H 0.083 0.917 54 H 0.083 0.917 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.067 -21.249 2.879 29.368 hybrid contribution 1.188 1.117 -0.191 1.642 sum -18.879 -20.132 2.688 27.729 Atomic orbital electron populations 1.21798 0.95893 1.01864 1.01731 1.21528 0.95922 0.96390 1.02304 1.21610 0.95089 0.97215 1.01943 1.21464 0.95596 0.94558 1.03050 1.21525 0.93306 0.98282 1.02515 1.22799 0.95396 0.81892 1.01862 1.87964 1.19594 1.28718 1.95795 1.22234 0.83348 0.91387 1.05263 1.20705 0.80399 0.92057 0.75618 1.90696 1.49898 1.53820 1.51703 1.48866 1.05057 1.08498 1.72226 1.22649 0.83505 0.93404 1.01658 1.23013 0.94924 0.93556 1.00413 0.87835 1.22071 0.93400 0.87664 0.96612 1.45324 1.02580 1.02001 1.84238 1.19352 0.84830 0.95051 1.36876 0.89940 1.25647 1.01508 0.97568 1.00780 1.70082 1.37096 1.04826 1.47557 0.85178 0.79750 0.76833 0.78149 1.21376 1.22427 1.19212 1.21520 0.84802 0.94843 0.93931 1.22333 0.93484 0.96853 0.96241 1.21461 1.01144 0.99948 0.94139 1.21929 0.93972 0.84220 0.99632 0.92308 0.92894 0.92915 0.91733 0.91695 0.92304 0.92349 0.90976 0.90897 0.92175 0.92254 0.91508 0.91372 0.87438 0.87118 0.89956 0.86220 0.91955 0.95063 0.94390 0.92946 0.98294 0.93208 0.93481 0.91686 0.91696 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.91 71.98 0.71 -0.66 16 2 C -0.12 -1.10 5.93 30.60 0.18 -0.92 16 3 C -0.12 -1.27 5.21 30.59 0.16 -1.11 16 4 C -0.11 -1.09 5.21 30.59 0.16 -0.93 16 5 C -0.12 -1.75 5.58 30.59 0.17 -1.58 16 6 C 0.06 0.83 5.94 71.98 0.43 1.26 16 7 O -0.40 -9.60 9.88 -129.94 -1.28 -10.89 16 8 C 0.06 1.10 5.41 71.24 0.39 1.48 16 9 C 0.52 15.47 7.95 87.66 0.70 16.17 16 10 O -0.58 -23.32 16.73 15.99 0.27 -23.05 16 11 N -0.61 -17.16 3.34 -812.73 -2.71 -19.88 16 12 C 0.11 2.35 6.42 86.29 0.55 2.91 16 13 C -0.10 -2.82 3.71 -9.28 -0.03 -2.86 16 14 H 0.10 2.65 7.93 -2.39 -0.02 2.63 16 15 C 0.13 4.55 6.76 86.52 0.58 5.14 16 16 N -0.62 -29.69 3.37 -686.91 -2.32 -32.00 16 17 C -0.23 -12.38 10.37 84.03 0.87 -11.51 16 18 H 0.08 4.17 7.85 -2.91 -0.02 4.15 16 19 C -0.06 -3.39 5.40 84.86 0.46 -2.93 16 20 N -0.95 -56.05 10.89 21.65 0.24 -55.82 16 21 Si 0.97 44.54 29.56 68.60 2.03 46.56 16 22 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 25 C 0.18 8.17 5.11 86.52 0.44 8.61 16 26 C -0.09 -3.04 1.08 -50.68 -0.05 -3.09 16 27 C -0.11 -3.66 8.61 71.98 0.62 -3.04 16 28 C 0.13 4.26 6.24 86.49 0.54 4.79 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 0.75 8.14 -2.38 -0.02 0.74 16 42 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.11 1.42 7.87 -2.39 -0.02 1.40 16 44 H 0.08 1.71 7.11 -2.39 -0.02 1.69 16 45 H 0.12 1.53 7.38 -2.39 -0.02 1.52 16 46 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.03 1.10 7.17 -2.38 -0.02 1.08 16 48 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 49 H 0.05 2.84 6.24 -2.39 -0.01 2.82 16 50 H 0.00 -0.04 7.17 -2.39 -0.02 -0.06 16 51 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 52 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 53 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 54 H 0.06 2.32 7.63 -2.39 -0.02 2.30 16 55 H 0.06 2.10 7.11 -2.38 -0.02 2.08 16 Total: -1.00 -73.37 428.26 3.91 -69.45 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.82 Total: 13.90 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 6.88 Total: 11.72 kcal Atomic # 7 Polarization: -102.90 SS G_CDS: -4.80 Total: -107.70 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -1.02 Total: -33.94 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -73.37 3.91 -69.45 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101446141.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.507 kcal (2) G-P(sol) polarization free energy of solvation -73.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds