Wall clock time and date at job start Tue Mar 31 2020 20:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46829 * 2 1 4 4 C 1.53005 * 109.47200 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46762 * 60.00152 * 4 3 2 6 6 C 1.53001 * 109.46826 * 300.00035 * 4 3 2 7 7 C 1.50696 * 109.47123 * 179.97438 * 4 3 2 8 8 O 1.21282 * 120.00187 * 355.14919 * 7 4 3 9 9 N 1.34780 * 119.99740 * 175.14833 * 7 4 3 10 10 C 1.46932 * 120.62657 * 184.99772 * 9 7 4 11 11 C 1.53197 * 108.77105 * 233.62818 * 10 9 7 12 12 C 1.53039 * 109.31203 * 305.36557 * 11 10 9 13 13 O 1.42901 * 109.45794 * 181.38711 * 12 11 10 14 14 C 1.42897 * 114.00217 * 149.97418 * 13 12 11 15 15 C 1.53495 * 114.21152 * 149.99728 * 14 13 12 16 16 N 1.47069 * 87.98271 * 87.51990 * 15 14 13 17 17 C 1.36936 * 136.05353 * 206.86371 * 16 15 14 18 18 H 1.07995 * 120.00508 * 355.76097 * 17 16 15 19 19 C 1.38822 * 119.99506 * 175.76220 * 17 16 15 20 20 N 1.31614 * 119.99912 * 5.99032 * 19 17 16 21 21 Si 1.86803 * 119.99701 * 185.98346 * 19 17 16 22 22 H 1.48500 * 109.46823 * 94.99221 * 21 19 17 23 23 H 1.48496 * 109.47058 * 214.99205 * 21 19 17 24 24 H 1.48498 * 109.47284 * 334.99408 * 21 19 17 25 25 C 1.47062 * 87.88429 * 27.12417 * 16 15 14 26 26 C 1.53045 * 109.52648 * 61.37370 * 12 11 10 27 27 C 1.46923 * 120.63233 * 5.01613 * 9 7 4 28 28 H 1.09001 * 109.46955 * 60.00140 * 1 2 3 29 29 H 1.08998 * 109.46453 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47014 * 299.99514 * 1 2 3 31 31 H 1.08999 * 109.47484 * 240.00467 * 2 1 3 32 32 H 1.09004 * 109.47453 * 119.99928 * 2 1 3 33 33 H 1.09003 * 109.47174 * 59.99844 * 3 2 1 34 34 H 1.08996 * 109.47254 * 300.00423 * 3 2 1 35 35 H 1.09001 * 109.46807 * 163.57765 * 5 4 3 36 36 H 1.09008 * 109.47198 * 283.57272 * 5 4 3 37 37 H 1.08996 * 109.47857 * 43.57688 * 5 4 3 38 38 H 1.08999 * 109.47253 * 307.17050 * 6 4 3 39 39 H 1.08997 * 109.47185 * 67.17406 * 6 4 3 40 40 H 1.08999 * 109.46817 * 187.16780 * 6 4 3 41 41 H 1.09004 * 109.58705 * 113.84265 * 10 9 7 42 42 H 1.08998 * 109.70221 * 353.48340 * 10 9 7 43 43 H 1.08995 * 109.49461 * 185.41400 * 11 10 9 44 44 H 1.08995 * 109.49541 * 65.32038 * 11 10 9 45 45 H 1.09002 * 109.46021 * 301.35696 * 12 11 10 46 46 H 1.09005 * 113.27768 * 16.93103 * 14 13 12 47 47 H 1.09008 * 113.46671 * 332.74312 * 15 14 13 48 48 H 1.08997 * 113.52815 * 202.31067 * 15 14 13 49 49 H 0.97002 * 119.99541 * 179.97438 * 20 19 17 50 50 H 1.08999 * 113.46903 * 87.65931 * 25 16 15 51 51 H 1.08999 * 113.46705 * 218.09900 * 25 16 15 52 52 H 1.09001 * 109.49711 * 58.58188 * 26 12 11 53 53 H 1.09000 * 109.49259 * 178.67477 * 26 12 11 54 54 H 1.08998 * 109.58742 * 246.15772 * 27 9 7 55 55 H 1.09002 * 109.58617 * 6.43833 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0794 0.7216 -1.2502 6 6 4.0805 0.7212 1.2483 7 6 4.0722 2.8634 -0.0013 8 8 3.2876 3.7840 -0.0900 9 7 5.3934 3.1112 0.0968 10 6 5.8904 4.4895 0.2075 11 6 6.9386 4.7248 -0.8846 12 6 8.0270 3.6539 -0.7807 13 8 9.0233 3.8894 -1.7776 14 6 10.3331 3.4572 -1.4039 15 6 11.2119 3.0191 -2.5837 16 7 11.6292 4.4221 -2.7265 17 6 12.0762 5.2189 -3.7465 18 1 12.2521 4.7961 -4.7246 19 6 12.3032 6.5701 -3.5233 20 7 12.2030 7.0620 -2.3067 21 14 12.7510 7.6900 -4.9498 22 1 11.5235 8.3447 -5.4692 23 1 13.7059 8.7274 -4.4837 24 1 13.3794 6.8883 -6.0302 25 6 11.3616 4.5909 -1.2903 26 6 7.4067 2.2715 -0.9963 27 6 6.3641 2.0082 0.0947 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 5.1298 0.9664 -1.4080 36 1 3.9733 -0.3551 -1.1172 37 1 3.4983 1.0398 -2.1157 38 1 3.6166 1.1554 2.1339 39 1 3.8258 -0.3368 1.1864 40 1 5.1630 0.8310 1.3143 41 1 6.3444 4.6366 1.1875 42 1 5.0647 5.1893 0.0784 43 1 7.3847 5.7107 -0.7543 44 1 6.4632 4.6666 -1.8637 45 1 8.4850 3.6963 0.2076 46 1 10.3342 2.7627 -0.5637 47 1 10.6417 2.6471 -3.4350 48 1 12.0244 2.3516 -2.2967 49 1 12.3620 8.0061 -2.1507 50 1 12.2137 4.3422 -0.6577 51 1 10.9187 5.5554 -1.0417 52 1 6.9269 2.2366 -1.9745 53 1 8.1861 1.5112 -0.9456 54 1 6.8567 1.9531 1.0654 55 1 5.8494 1.0689 -0.1078 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105721676.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:03 Heat of formation + Delta-G solvation = -40.977891 kcal Electronic energy + Delta-G solvation = -31006.201287 eV Core-core repulsion = 27044.606667 eV Total energy + Delta-G solvation = -3961.594620 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.91871 -40.38799 -38.81326 -37.69188 -36.74245 -34.26172 -33.88483 -32.34702 -31.88969 -29.54272 -28.28839 -27.53065 -26.50729 -26.30717 -25.06860 -24.39078 -23.81856 -22.17361 -21.18652 -20.75963 -19.73868 -18.83495 -17.90970 -17.38034 -17.09139 -16.94136 -16.44267 -16.12365 -16.00692 -15.72557 -15.50175 -15.27591 -15.11386 -14.87181 -14.79298 -14.51574 -14.19797 -13.91611 -13.75249 -13.42602 -13.33301 -13.30664 -13.19777 -12.97434 -12.90076 -12.82305 -12.62911 -12.46423 -12.37734 -12.21843 -12.16024 -11.94772 -11.83370 -11.79409 -11.62820 -11.48116 -11.40120 -11.33682 -11.15367 -10.86857 -10.54925 -10.11528 -9.73353 -8.89461 -7.90462 -5.21029 1.41829 1.45464 1.53219 1.58551 1.95485 2.46716 2.68922 3.32660 3.37897 3.51149 3.67744 3.70902 3.83136 3.89016 3.89879 4.02096 4.11701 4.19782 4.26840 4.28570 4.30812 4.32992 4.42526 4.52646 4.56366 4.60601 4.68891 4.73107 4.79812 4.80031 4.83386 4.85340 4.87166 4.95528 4.97007 4.99058 5.01457 5.06778 5.11297 5.16016 5.18700 5.22722 5.25630 5.30689 5.35316 5.39403 5.48409 5.49648 5.52916 5.55246 5.96819 6.38958 6.62505 6.92223 7.13353 7.61716 8.63377 9.27602 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023588 B = 0.002189 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.775717 B =12790.971978 C =13084.467239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.076 4.076 5 C -0.156 4.156 6 C -0.156 4.156 7 C 0.516 3.484 8 O -0.590 6.590 9 N -0.608 5.608 10 C 0.121 3.879 11 C -0.126 4.126 12 C 0.084 3.916 13 O -0.373 6.373 14 C 0.066 3.934 15 C 0.112 3.888 16 N -0.640 5.640 17 C -0.224 4.224 18 H 0.081 0.919 19 C -0.071 4.071 20 N -0.953 5.953 21 Si 0.977 3.023 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.265 1.265 25 C 0.125 3.875 26 C -0.150 4.150 27 C 0.089 3.911 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.050 0.950 45 H 0.076 0.924 46 H 0.115 0.885 47 H 0.047 0.953 48 H 0.071 0.929 49 H 0.246 0.754 50 H 0.033 0.967 51 H 0.034 0.966 52 H 0.060 0.940 53 H 0.102 0.898 54 H 0.097 0.903 55 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.808 -20.922 10.730 30.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.129 4.129 4 C -0.079 4.079 5 C -0.213 4.213 6 C -0.213 4.213 7 C 0.306 3.694 8 O -0.471 6.471 9 N -0.340 5.340 10 C -0.002 4.002 11 C -0.164 4.164 12 C 0.027 3.973 13 O -0.292 6.292 14 C 0.007 3.993 15 C -0.013 4.013 16 N -0.366 5.366 17 C -0.352 4.352 18 H 0.099 0.901 19 C -0.264 4.264 20 N -0.602 5.602 21 Si 0.805 3.195 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.190 1.190 25 C -0.001 4.001 26 C -0.188 4.188 27 C -0.032 4.032 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.094 0.906 46 H 0.133 0.867 47 H 0.065 0.935 48 H 0.088 0.912 49 H 0.055 0.945 50 H 0.050 0.950 51 H 0.053 0.947 52 H 0.079 0.921 53 H 0.120 0.880 54 H 0.115 0.885 55 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.137 -20.074 10.331 29.596 hybrid contribution 0.577 1.716 -0.763 1.965 sum -18.560 -18.358 9.568 27.804 Atomic orbital electron populations 1.21788 0.96010 1.02076 1.01375 1.21614 0.95757 0.94932 1.03373 1.21422 0.92045 0.98030 1.01420 1.20808 0.97232 0.90158 0.99716 1.22281 1.01884 1.02210 0.94951 1.22328 1.02864 1.01704 0.94354 1.21380 0.81547 0.92350 0.74103 1.90655 1.56266 1.48321 1.51822 1.48213 1.06020 1.07700 1.72062 1.21467 0.96418 0.83705 0.98565 1.21881 0.95866 0.99383 0.99306 1.22271 0.88277 0.94765 0.91994 1.88027 1.16353 1.82900 1.41954 1.23594 0.82402 0.95777 0.97537 1.22889 0.94714 0.87149 0.96503 1.45816 1.77613 1.07614 1.05594 1.19294 1.36155 0.89839 0.89915 0.90082 1.25635 1.03348 0.98185 0.99218 1.70025 1.57157 1.12535 1.20467 0.85073 0.77112 0.78563 0.78705 1.21837 1.21899 1.18962 1.22693 0.94185 0.97608 0.85613 1.22452 0.99487 0.97155 0.99722 1.22626 0.89839 0.90824 0.99866 0.93578 0.91525 0.93193 0.90721 0.90152 0.93076 0.93630 0.90674 0.88170 0.93073 0.92686 0.88631 0.89720 0.89256 0.90506 0.91566 0.93090 0.90558 0.86724 0.93496 0.91193 0.94486 0.94960 0.94711 0.92109 0.87959 0.88528 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.91 71.98 0.71 -1.00 16 2 C -0.12 -1.24 5.27 30.60 0.16 -1.08 16 3 C -0.09 -1.51 3.50 30.60 0.11 -1.40 16 4 C -0.08 -1.14 0.52 -52.93 -0.03 -1.17 16 5 C -0.16 -1.84 7.20 71.98 0.52 -1.32 16 6 C -0.16 -1.41 7.52 71.98 0.54 -0.87 16 7 C 0.52 12.06 6.48 87.66 0.57 12.63 16 8 O -0.59 -19.28 15.40 -3.04 -0.05 -19.32 16 9 N -0.61 -12.34 2.96 -818.89 -2.43 -14.76 16 10 C 0.12 2.85 6.44 86.36 0.56 3.41 16 11 C -0.13 -3.56 5.73 30.67 0.18 -3.38 16 12 C 0.08 2.21 2.46 30.62 0.08 2.29 16 13 O -0.37 -13.96 10.04 -148.98 -1.50 -15.46 16 14 C 0.07 2.33 4.50 30.93 0.14 2.47 16 15 C 0.11 4.47 8.52 83.17 0.71 5.18 16 16 N -0.64 -34.14 3.78 -739.11 -2.79 -36.94 16 17 C -0.22 -13.19 10.74 84.04 0.90 -12.29 16 18 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 19 C -0.07 -4.26 5.50 84.87 0.47 -3.79 16 20 N -0.95 -60.02 11.51 21.65 0.25 -59.77 16 21 Si 0.98 47.89 29.56 68.60 2.03 49.92 16 22 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 23 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 25 C 0.13 6.00 7.29 83.18 0.61 6.60 16 26 C -0.15 -2.74 5.48 30.67 0.17 -2.57 16 27 C 0.09 1.18 3.78 86.36 0.33 1.51 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.65 6.82 -2.39 -0.02 0.63 16 32 H 0.08 0.61 6.60 -2.38 -0.02 0.59 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.04 0.96 8.04 -2.39 -0.02 0.94 16 35 H 0.07 0.89 4.62 -2.39 -0.01 0.88 16 36 H 0.10 0.62 7.18 -2.38 -0.02 0.61 16 37 H 0.05 0.76 8.03 -2.39 -0.02 0.74 16 38 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.09 0.44 6.70 -2.39 -0.02 0.42 16 40 H 0.08 0.58 4.55 -2.39 -0.01 0.57 16 41 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.08 2.11 7.01 -2.39 -0.02 2.10 16 43 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.08 1.75 7.71 -2.39 -0.02 1.73 16 46 H 0.12 2.89 7.76 -2.38 -0.02 2.87 16 47 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 48 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 49 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 50 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.03 1.94 7.08 -2.39 -0.02 1.92 16 52 H 0.06 1.32 7.86 -2.39 -0.02 1.30 16 53 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 54 H 0.10 0.88 7.96 -2.39 -0.02 0.86 16 55 H 0.13 1.17 2.92 -2.39 -0.01 1.17 16 Total: -1.00 -80.74 410.09 3.07 -77.67 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.85 Total: 13.46 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 6.71 Total: 5.20 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -4.97 Total: -111.47 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -1.54 Total: -34.78 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Total: -80.74 3.07 -77.67 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105721676.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.692 kcal (2) G-P(sol) polarization free energy of solvation -80.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds