Wall clock time and date at job start Tue Mar 31 2020 23:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47193 * 2 1 4 4 C 1.52997 * 109.47260 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47220 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47220 * 179.97438 * 5 4 3 7 7 O 1.42901 * 109.47553 * 179.97438 * 6 5 4 8 8 C 1.42900 * 114.00350 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47008 * 30.00235 * 8 7 6 10 10 C 1.52996 * 109.47138 * 270.00284 * 8 7 6 11 11 C 1.50695 * 109.46822 * 150.00246 * 8 7 6 12 12 O 1.21274 * 120.00413 * 5.27251 * 11 8 7 13 13 N 1.34784 * 119.99635 * 185.00209 * 11 8 7 14 14 C 1.46499 * 119.99971 * 179.97438 * 13 11 8 15 15 H 1.09008 * 110.55788 * 34.29726 * 14 13 11 16 16 C 1.54859 * 110.62764 * 271.40145 * 14 13 11 17 17 C 1.56223 * 103.26723 * 241.54568 * 16 14 13 18 18 H 1.08993 * 116.12264 * 159.08783 * 17 16 14 19 19 C 1.55842 * 105.00221 * 288.06144 * 17 16 14 20 20 C 1.54853 * 103.44421 * 71.87906 * 19 17 16 21 21 C 1.55839 * 110.62727 * 157.19649 * 14 13 11 22 22 H 1.08996 * 115.56110 * 318.92974 * 21 14 13 23 23 N 1.50239 * 101.11976 * 32.82915 * 17 16 14 24 24 C 1.36940 * 130.83830 * 126.09879 * 23 17 16 25 25 H 1.07999 * 119.99686 * 179.97438 * 24 23 17 26 26 C 1.38811 * 120.00033 * 359.97438 * 24 23 17 27 27 N 1.31622 * 119.99669 * 359.97438 * 26 24 23 28 28 Si 1.86794 * 120.00129 * 179.97438 * 26 24 23 29 29 H 1.48504 * 109.47199 * 0.02562 * 28 26 24 30 30 H 1.48506 * 109.47246 * 119.99773 * 28 26 24 31 31 H 1.48500 * 109.47269 * 240.00148 * 28 26 24 32 32 H 1.08995 * 109.46733 * 299.99877 * 1 2 3 33 33 H 1.08996 * 109.46986 * 60.00201 * 1 2 3 34 34 H 1.09001 * 109.47109 * 180.02562 * 1 2 3 35 35 H 1.09004 * 109.46532 * 240.00141 * 2 1 3 36 36 H 1.08999 * 109.47040 * 120.00562 * 2 1 3 37 37 H 1.09000 * 109.47203 * 59.99658 * 3 2 1 38 38 H 1.09005 * 109.46929 * 300.00382 * 3 2 1 39 39 H 1.08995 * 109.47074 * 59.99873 * 4 3 2 40 40 H 1.09005 * 109.47087 * 299.99827 * 4 3 2 41 41 H 1.08997 * 109.47864 * 59.99395 * 5 4 3 42 42 H 1.09004 * 109.46968 * 299.99284 * 5 4 3 43 43 H 1.09000 * 109.47666 * 59.99133 * 6 5 4 44 44 H 1.09005 * 109.47087 * 299.99477 * 6 5 4 45 45 H 1.09005 * 109.47553 * 59.99930 * 10 8 7 46 46 H 1.09001 * 109.46915 * 180.02562 * 10 8 7 47 47 H 1.09002 * 109.47131 * 299.99876 * 10 8 7 48 48 H 0.96999 * 120.00044 * 0.02562 * 13 11 8 49 49 H 1.08996 * 110.62261 * 359.97438 * 16 14 13 50 50 H 1.08998 * 110.62819 * 123.02143 * 16 14 13 51 51 H 1.09004 * 110.62617 * 313.39210 * 19 17 16 52 52 H 1.08998 * 110.63062 * 190.37264 * 19 17 16 53 53 H 1.09000 * 110.62883 * 241.50420 * 20 19 17 54 54 H 1.09002 * 110.75599 * 118.56085 * 20 19 17 55 55 H 0.97001 * 119.99733 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6100 2.8849 0.0000 7 8 6.0865 4.2322 0.0000 8 6 7.5110 4.3450 0.0006 9 1 7.9437 3.4864 -0.5130 10 6 8.0188 4.3854 1.4432 11 6 7.9148 5.6112 -0.7098 12 8 7.0668 6.3919 -1.0868 13 7 9.2188 5.8787 -0.9213 14 6 9.6115 7.1093 -1.6124 15 1 8.9279 7.9217 -1.3654 16 6 9.6596 6.8835 -3.1436 17 6 11.1545 7.1636 -3.5005 18 1 11.5123 6.7371 -4.4375 19 6 11.3212 8.7064 -3.3570 20 6 11.2687 8.9334 -1.8261 21 6 11.0775 7.4969 -1.2530 22 1 11.3554 7.3669 -0.2072 23 7 11.8446 6.6824 -2.2558 24 6 12.8605 5.7797 -2.0871 25 1 13.2295 5.5611 -1.0959 26 6 13.4159 5.1458 -3.1901 27 7 12.9657 5.4120 -4.3979 28 14 14.8020 3.9150 -2.9601 29 1 15.1220 3.7940 -1.5150 30 1 14.3811 2.5914 -3.4858 31 1 16.0046 4.3805 -3.6965 32 1 -0.3632 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8899 37 1 1.6767 1.9563 0.8899 38 1 1.6767 1.9563 -0.8900 39 1 3.9330 0.9288 -0.8908 40 1 3.9338 0.9285 0.8892 41 1 3.7171 3.3984 0.8903 42 1 3.7164 3.3993 -0.8896 43 1 5.9735 2.3714 -0.8901 44 1 5.9734 2.3708 0.8898 45 1 7.7267 3.4696 1.9571 46 1 9.1054 4.4720 1.4436 47 1 7.5861 5.2440 1.9568 48 1 9.8973 5.2560 -0.6166 49 1 9.3918 5.8557 -3.3887 50 1 9.0022 7.5857 -3.6562 51 1 10.5018 9.2288 -3.8510 52 1 12.2814 9.0281 -3.7602 53 1 10.4234 9.5684 -1.5608 54 1 12.2016 9.3688 -1.4679 55 1 13.3536 4.9687 -5.1686 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110558849.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:31 Heat of formation + Delta-G solvation = -86.088505 kcal Electronic energy + Delta-G solvation = -29975.197223 eV Core-core repulsion = 26011.646459 eV Total energy + Delta-G solvation = -3963.550763 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.40053 -40.23634 -38.76647 -37.08423 -35.34538 -34.46274 -33.93205 -32.22189 -30.96606 -30.33913 -29.23776 -28.94227 -26.18610 -25.55110 -24.50110 -22.75639 -22.17808 -21.85600 -21.54266 -21.11261 -20.28757 -18.84072 -18.22101 -18.01006 -17.25028 -16.91543 -16.75606 -16.27325 -16.02634 -15.76180 -15.54835 -15.17267 -14.84909 -14.67039 -14.45895 -14.20843 -13.88752 -13.78325 -13.66439 -13.57639 -13.30133 -13.06659 -12.90145 -12.88091 -12.76994 -12.69195 -12.62269 -12.40296 -12.14761 -12.08365 -11.93102 -11.86578 -11.78546 -11.71927 -11.69731 -11.46981 -11.36517 -11.18596 -10.96007 -10.94639 -10.80633 -10.38883 -9.95575 -8.86598 -7.74365 -5.14531 1.50030 1.51357 1.60145 1.61446 1.92207 2.51414 2.89376 3.38857 3.45460 3.68344 3.88036 3.91227 3.95939 4.00628 4.05025 4.10386 4.12669 4.19129 4.27749 4.35697 4.43971 4.45738 4.48798 4.51355 4.56216 4.62420 4.69086 4.72065 4.76605 4.82226 4.83876 4.86991 4.90764 4.92253 5.06892 5.08691 5.09478 5.16053 5.17364 5.19142 5.21070 5.23981 5.36255 5.38895 5.46347 5.51516 5.52948 5.60031 5.70338 5.90737 6.12297 6.27944 6.64786 7.07050 7.27790 7.73952 8.59717 9.33256 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013640 B = 0.002140 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.317692 B =13078.594798 C =14072.350674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.119 4.119 4 C -0.111 4.111 5 C -0.114 4.114 6 C 0.053 3.947 7 O -0.386 6.386 8 C 0.073 3.927 9 H 0.100 0.900 10 C -0.160 4.160 11 C 0.508 3.492 12 O -0.576 6.576 13 N -0.699 5.699 14 C 0.140 3.860 15 H 0.082 0.918 16 C -0.134 4.134 17 C 0.141 3.859 18 H 0.116 0.884 19 C -0.133 4.133 20 C -0.120 4.120 21 C 0.130 3.870 22 H 0.107 0.893 23 N -0.609 5.609 24 C -0.210 4.210 25 H 0.089 0.911 26 C -0.071 4.071 27 N -0.949 5.949 28 Si 0.975 3.025 29 H -0.263 1.263 30 H -0.299 1.299 31 H -0.302 1.302 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.060 0.940 48 H 0.408 0.592 49 H 0.033 0.967 50 H 0.062 0.938 51 H 0.068 0.932 52 H 0.039 0.961 53 H 0.080 0.920 54 H 0.061 0.939 55 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.332 -7.207 12.344 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.157 4.157 4 C -0.148 4.148 5 C -0.152 4.152 6 C -0.023 4.023 7 O -0.305 6.305 8 C 0.012 3.988 9 H 0.117 0.883 10 C -0.218 4.218 11 C 0.294 3.706 12 O -0.456 6.456 13 N -0.349 5.349 14 C 0.033 3.967 15 H 0.100 0.900 16 C -0.174 4.174 17 C 0.034 3.966 18 H 0.133 0.867 19 C -0.172 4.172 20 C -0.160 4.160 21 C 0.022 3.978 22 H 0.125 0.875 23 N -0.331 5.331 24 C -0.338 4.338 25 H 0.107 0.893 26 C -0.263 4.263 27 N -0.599 5.599 28 Si 0.805 3.195 29 H -0.188 1.188 30 H -0.226 1.226 31 H -0.230 1.230 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.108 0.892 46 H 0.104 0.896 47 H 0.079 0.921 48 H 0.244 0.756 49 H 0.052 0.948 50 H 0.081 0.919 51 H 0.087 0.913 52 H 0.058 0.942 53 H 0.098 0.902 54 H 0.080 0.920 55 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -16.832 -6.707 12.015 21.741 hybrid contribution 1.271 -0.951 -0.544 1.678 sum -15.561 -7.658 11.470 20.793 Atomic orbital electron populations 1.21791 0.95675 1.01908 1.01815 1.21537 0.96101 0.96380 1.02231 1.21596 0.94738 0.97260 1.02079 1.21478 0.95891 0.94593 1.02853 1.21499 0.92739 0.98305 1.02674 1.22845 0.95841 0.82398 1.01205 1.87995 1.19151 1.28218 1.95184 1.21954 0.83366 0.95347 0.98135 0.88261 1.22184 1.02417 1.04186 0.93006 1.20983 0.82470 0.88191 0.78934 1.90645 1.51352 1.50573 1.53006 1.45890 1.06634 1.24113 1.58307 1.22443 0.96770 0.86006 0.91459 0.89988 1.23377 0.98754 0.99292 0.96021 1.23648 0.88319 0.91341 0.93294 0.86687 1.22967 0.99804 0.97952 0.96503 1.22846 1.01371 0.96383 0.95409 1.23345 0.88626 0.91438 0.94348 0.87468 1.46728 1.37970 1.45965 1.02402 1.19410 1.07705 1.13313 0.93419 0.89324 1.25456 1.02661 1.02974 0.95191 1.69734 1.45337 1.46968 0.97894 0.85044 0.78625 0.78168 0.77684 1.18766 1.22641 1.22962 0.92626 0.92979 0.92280 0.92079 0.91556 0.91793 0.92503 0.91676 0.90680 0.91271 0.92636 0.93134 0.91067 0.89157 0.89610 0.92120 0.75616 0.94828 0.91913 0.91326 0.94241 0.90195 0.91979 0.94600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 71.99 0.71 -0.93 16 2 C -0.12 -1.41 5.93 30.60 0.18 -1.23 16 3 C -0.12 -1.55 5.21 30.59 0.16 -1.39 16 4 C -0.11 -1.50 5.21 30.59 0.16 -1.34 16 5 C -0.11 -2.10 5.58 30.59 0.17 -1.93 16 6 C 0.05 1.08 5.75 71.98 0.41 1.49 16 7 O -0.39 -11.03 9.53 -129.99 -1.24 -12.27 16 8 C 0.07 1.90 3.13 29.85 0.09 1.99 16 9 H 0.10 2.25 7.79 -2.39 -0.02 2.23 16 10 C -0.16 -3.10 9.48 71.98 0.68 -2.42 16 11 C 0.51 17.38 7.18 87.65 0.63 18.00 16 12 O -0.58 -24.66 16.19 15.97 0.26 -24.40 16 13 N -0.70 -23.13 5.05 -434.91 -2.19 -25.33 16 14 C 0.14 5.06 2.76 46.61 0.13 5.19 16 15 H 0.08 2.97 7.29 -2.38 -0.02 2.96 16 16 C -0.13 -5.54 6.26 32.35 0.20 -5.34 16 17 C 0.14 6.44 4.73 46.36 0.22 6.66 16 18 H 0.12 6.24 5.52 -2.39 -0.01 6.23 16 19 C -0.13 -5.14 6.44 32.21 0.21 -4.93 16 20 C -0.12 -4.05 6.44 32.21 0.21 -3.84 16 21 C 0.13 4.70 5.05 46.22 0.23 4.94 16 22 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 23 N -0.61 -28.03 2.99 -614.55 -1.84 -29.86 16 24 C -0.21 -10.59 10.59 84.03 0.89 -9.70 16 25 H 0.09 4.20 7.83 -2.91 -0.02 4.18 16 26 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 27 N -0.95 -54.24 10.47 21.65 0.23 -54.01 16 28 Si 0.97 43.54 29.55 68.60 2.03 45.56 16 29 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 30 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 31 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 43 H 0.05 1.00 8.09 -2.39 -0.02 0.98 16 44 H 0.07 1.11 7.87 -2.38 -0.02 1.09 16 45 H 0.09 1.32 7.87 -2.38 -0.02 1.30 16 46 H 0.09 1.46 7.92 -2.39 -0.02 1.44 16 47 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.41 12.51 8.42 -92.71 -0.78 11.73 16 49 H 0.03 1.52 7.98 -2.39 -0.02 1.50 16 50 H 0.06 2.44 7.82 -2.39 -0.02 2.42 16 51 H 0.07 2.34 7.82 -2.39 -0.02 2.33 16 52 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 53 H 0.08 2.28 7.82 -2.39 -0.02 2.26 16 54 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 55 H 0.24 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -66.91 430.71 3.06 -63.86 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: 0.06 Total: 34.52 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 5.76 Total: 1.93 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -3.80 Total: -109.20 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -0.98 Total: -36.67 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -66.91 3.06 -63.86 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110558849.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.231 kcal (2) G-P(sol) polarization free energy of solvation -66.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds