Wall clock time and date at job start Tue Mar 31 2020 23:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.53004 * 109.47190 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47105 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47105 * 179.97438 * 5 4 3 7 7 O 1.42899 * 109.46947 * 179.97438 * 6 5 4 8 8 C 1.42902 * 113.99481 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46911 * 179.97438 * 8 7 6 10 10 O 1.21277 * 119.99864 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00122 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00480 * 180.02562 * 11 9 8 13 13 C 1.54321 * 112.35791 * 299.34290 * 12 11 9 14 14 C 1.55062 * 103.93547 * 262.38478 * 13 12 11 15 15 C 1.55057 * 102.10704 * 319.94498 * 14 13 12 16 16 C 1.54325 * 103.93854 * 40.05601 * 15 14 13 17 17 H 1.09005 * 111.68765 * 97.20330 * 16 15 14 18 18 C 1.53776 * 109.06055 * 221.16515 * 16 15 14 19 19 N 1.49318 * 105.33495 * 95.08021 * 18 16 15 20 20 C 1.36935 * 126.54459 * 211.25993 * 19 18 16 21 21 H 1.08003 * 120.00286 * 180.19984 * 20 19 18 22 22 C 1.38811 * 119.99894 * 0.19791 * 20 19 18 23 23 N 1.31619 * 119.99914 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00189 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46692 * 60.00327 * 24 22 20 26 26 H 1.48499 * 109.47167 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47339 * 300.00318 * 24 22 20 28 28 C 1.47214 * 106.75419 * 31.42593 * 19 18 16 29 29 H 1.09005 * 109.47073 * 60.00259 * 1 2 3 30 30 H 1.08999 * 109.47629 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47382 * 300.00435 * 1 2 3 32 32 H 1.08994 * 109.47390 * 240.00075 * 2 1 3 33 33 H 1.08999 * 109.47119 * 119.99300 * 2 1 3 34 34 H 1.08998 * 109.47345 * 59.99542 * 3 2 1 35 35 H 1.09005 * 109.46933 * 299.99827 * 3 2 1 36 36 H 1.09001 * 109.46661 * 59.99756 * 4 3 2 37 37 H 1.08998 * 109.46936 * 300.00136 * 4 3 2 38 38 H 1.08998 * 109.47229 * 59.99910 * 5 4 3 39 39 H 1.08998 * 109.47494 * 299.99989 * 5 4 3 40 40 H 1.08998 * 109.47151 * 59.99862 * 6 5 4 41 41 H 1.08998 * 109.46936 * 300.00330 * 6 5 4 42 42 H 1.09007 * 109.46857 * 60.00902 * 8 7 6 43 43 H 1.08994 * 109.47504 * 300.00045 * 8 7 6 44 44 H 0.97003 * 119.99982 * 359.97438 * 11 9 8 45 45 H 1.09002 * 110.53536 * 143.77725 * 13 12 11 46 46 H 1.08994 * 110.53769 * 21.00073 * 13 12 11 47 47 H 1.08996 * 110.90165 * 201.73821 * 14 13 12 48 48 H 1.09004 * 110.89792 * 78.14209 * 14 13 12 49 49 H 1.09003 * 110.52966 * 158.66676 * 15 14 13 50 50 H 1.08996 * 110.53083 * 281.43837 * 15 14 13 51 51 H 1.09006 * 110.07101 * 214.11892 * 18 16 15 52 52 H 1.08997 * 110.07560 * 335.65859 * 18 16 15 53 53 H 0.96999 * 120.00133 * 179.97438 * 23 22 20 54 54 H 1.09003 * 110.07365 * 209.30139 * 28 19 18 55 55 H 1.09000 * 110.11996 * 87.78746 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6100 2.8850 0.0013 7 8 6.0863 4.2323 0.0001 8 6 7.5109 4.3451 0.0017 9 6 7.8995 5.8012 -0.0004 10 8 7.0411 6.6579 -0.0025 11 7 9.2009 6.1513 0.0002 12 6 9.5787 7.5667 -0.0013 13 6 9.0554 8.3127 -1.2467 14 6 10.2690 8.3256 -2.2117 15 6 11.4501 8.5999 -1.2452 16 6 11.1165 7.7511 -0.0003 17 1 11.6386 6.7943 -0.0134 18 6 11.4468 8.5622 1.2637 19 7 10.1611 9.2056 1.6672 20 6 10.0159 10.4135 2.2958 21 1 9.0300 10.7786 2.5429 22 6 11.1359 11.1687 2.6153 23 7 12.3374 10.7240 2.3137 24 14 10.9378 12.8167 3.4722 25 1 10.2553 12.6178 4.7760 26 1 12.2755 13.4195 3.7012 27 1 10.1253 13.7226 2.6212 28 6 9.0825 8.2892 1.2623 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 3.9337 0.9286 -0.8891 37 1 3.9330 0.9289 0.8908 38 1 3.7163 3.3994 0.8895 39 1 3.7171 3.3984 -0.8904 40 1 5.9741 2.3705 -0.8880 41 1 5.9726 2.3718 0.8919 42 1 7.9147 3.8604 -0.8872 43 1 7.9125 3.8627 0.8928 44 1 9.8875 5.4661 0.0023 45 1 8.7620 9.3301 -0.9878 46 1 8.2188 7.7740 -1.6916 47 1 10.1735 9.1255 -2.9460 48 1 10.3851 7.3598 -2.7034 49 1 12.3909 8.2742 -1.6891 50 1 11.4944 9.6577 -0.9862 51 1 11.8036 7.8985 2.0515 52 1 12.2015 9.3156 1.0383 53 1 13.1201 11.2518 2.5367 54 1 8.1765 8.8529 1.0396 55 1 8.8877 7.5662 2.0545 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111955887.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:33 Heat of formation + Delta-G solvation = -101.414223 kcal Electronic energy + Delta-G solvation = -29822.572569 eV Core-core repulsion = 25858.357233 eV Total energy + Delta-G solvation = -3964.215336 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.59901 -39.83617 -38.59984 -37.00902 -36.13841 -34.73304 -33.71915 -33.37753 -31.18613 -30.25204 -29.22185 -27.88920 -26.27233 -26.02797 -24.60491 -22.72130 -22.26762 -22.09827 -21.84584 -20.74774 -20.31992 -19.08592 -17.97184 -17.66362 -17.50656 -16.91223 -16.69147 -16.56471 -16.01777 -15.68133 -15.51244 -15.31797 -15.00933 -14.84928 -14.65036 -14.62611 -14.37020 -14.02738 -13.79119 -13.54305 -13.44830 -13.09900 -12.81744 -12.80940 -12.73957 -12.45541 -12.22343 -12.18354 -12.09600 -12.05315 -11.83416 -11.76944 -11.71465 -11.68868 -11.64295 -11.57482 -11.46250 -11.40550 -11.35452 -10.77208 -10.65331 -10.62943 -10.04764 -8.91647 -7.76756 -5.23371 1.45013 1.47811 1.54279 1.64712 1.83506 2.48021 2.97278 3.29709 3.44438 3.63942 3.79000 3.86328 3.91399 3.96224 3.96592 4.11795 4.19051 4.22536 4.33177 4.39335 4.40520 4.41806 4.47965 4.50405 4.54245 4.61723 4.63632 4.73170 4.78995 4.81481 4.88306 4.91103 4.92968 4.96369 5.04211 5.08273 5.09486 5.10589 5.21575 5.23081 5.24526 5.28125 5.37347 5.41079 5.46644 5.47390 5.52424 5.61558 5.72315 5.84354 6.15068 6.34850 6.66652 7.07763 7.34402 7.72704 8.41035 9.22427 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018337 B = 0.001875 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.576081 B =14927.143787 C =15848.668640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.122 4.122 4 C -0.108 4.108 5 C -0.119 4.119 6 C 0.057 3.943 7 O -0.402 6.402 8 C 0.052 3.948 9 C 0.504 3.496 10 O -0.568 6.568 11 N -0.696 5.696 12 C 0.173 3.827 13 C -0.108 4.108 14 C -0.109 4.109 15 C -0.105 4.105 16 C -0.101 4.101 17 H 0.110 0.890 18 C 0.143 3.857 19 N -0.616 5.616 20 C -0.242 4.242 21 H 0.068 0.932 22 C -0.057 4.057 23 N -0.940 5.940 24 Si 0.978 3.022 25 H -0.283 1.283 26 H -0.285 1.285 27 H -0.280 1.280 28 C 0.145 3.855 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.115 0.885 43 H 0.105 0.895 44 H 0.418 0.582 45 H 0.042 0.958 46 H 0.063 0.937 47 H 0.070 0.930 48 H 0.091 0.909 49 H 0.088 0.912 50 H 0.040 0.960 51 H -0.013 1.013 52 H 0.104 0.896 53 H 0.250 0.750 54 H 0.022 0.978 55 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.545 -24.335 -10.104 28.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C -0.159 4.159 4 C -0.146 4.146 5 C -0.157 4.157 6 C -0.019 4.019 7 O -0.321 6.321 8 C -0.027 4.027 9 C 0.291 3.709 10 O -0.445 6.445 11 N -0.350 5.350 12 C 0.085 3.915 13 C -0.147 4.147 14 C -0.146 4.146 15 C -0.143 4.143 16 C -0.121 4.121 17 H 0.128 0.872 18 C 0.018 3.982 19 N -0.341 5.341 20 C -0.370 4.370 21 H 0.086 0.914 22 C -0.250 4.250 23 N -0.589 5.589 24 Si 0.806 3.194 25 H -0.209 1.209 26 H -0.211 1.211 27 H -0.206 1.206 28 C 0.017 3.983 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.133 0.867 43 H 0.122 0.878 44 H 0.256 0.744 45 H 0.061 0.939 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.109 0.891 49 H 0.107 0.893 50 H 0.059 0.941 51 H 0.005 0.995 52 H 0.121 0.879 53 H 0.060 0.940 54 H 0.041 0.959 55 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -11.178 -23.390 -10.005 27.787 hybrid contribution 0.145 0.856 1.088 1.392 sum -11.034 -22.534 -8.917 26.628 Atomic orbital electron populations 1.21799 0.95893 1.01897 1.01716 1.21525 0.95924 0.96307 1.02341 1.21619 0.95129 0.97282 1.01899 1.21461 0.95573 0.94499 1.03060 1.21528 0.93470 0.98303 1.02402 1.22778 0.95306 0.82040 1.01770 1.87983 1.19803 1.28535 1.95785 1.22286 0.83344 0.91802 1.05307 1.21044 0.82444 0.91939 0.75512 1.90724 1.50736 1.53452 1.49619 1.45718 1.07140 1.07222 1.74956 1.21403 0.94965 0.80564 0.94549 1.22519 0.98470 0.98689 0.95030 1.22557 0.93042 1.02509 0.96518 1.22364 0.98977 0.98811 0.94120 1.22926 0.92315 0.99910 0.96974 0.87233 1.22269 0.89937 0.94786 0.91192 1.45177 1.02140 1.18220 1.68560 1.19320 0.93115 0.94299 1.30305 0.91401 1.25492 0.94863 1.02167 1.02479 1.69825 0.97227 1.38784 1.53056 0.85168 0.76552 0.79431 0.78246 1.20943 1.21091 1.20648 1.21526 0.91128 0.91750 0.93879 0.92865 0.92221 0.93010 0.91556 0.91759 0.92531 0.92258 0.90726 0.91057 0.92582 0.92129 0.91189 0.91778 0.86700 0.87774 0.74433 0.93939 0.91823 0.91129 0.89083 0.89348 0.94140 0.99474 0.87884 0.93991 0.95917 0.98414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.91 71.98 0.71 -0.81 16 2 C -0.12 -1.21 5.93 30.59 0.18 -1.03 16 3 C -0.12 -1.43 5.21 30.60 0.16 -1.27 16 4 C -0.11 -1.22 5.21 30.59 0.16 -1.06 16 5 C -0.12 -1.96 5.58 30.59 0.17 -1.78 16 6 C 0.06 0.92 5.94 71.98 0.43 1.34 16 7 O -0.40 -10.17 9.88 -129.94 -1.28 -11.45 16 8 C 0.05 1.02 6.42 71.24 0.46 1.48 16 9 C 0.50 15.20 7.23 87.66 0.63 15.84 16 10 O -0.57 -23.62 14.48 16.02 0.23 -23.39 16 11 N -0.70 -19.11 5.20 -416.84 -2.17 -21.28 16 12 C 0.17 6.29 0.92 4.96 0.00 6.30 16 13 C -0.11 -3.91 5.53 31.75 0.18 -3.74 16 14 C -0.11 -3.09 6.92 32.00 0.22 -2.87 16 15 C -0.10 -3.43 6.22 31.75 0.20 -3.24 16 16 C -0.10 -3.57 3.62 -9.44 -0.03 -3.60 16 17 H 0.11 2.99 7.71 -2.38 -0.02 2.97 16 18 C 0.14 6.91 5.67 86.09 0.49 7.40 16 19 N -0.62 -33.45 3.43 -689.82 -2.37 -35.82 16 20 C -0.24 -14.30 10.34 84.03 0.87 -13.43 16 21 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 22 C -0.06 -3.29 5.49 84.86 0.47 -2.82 16 23 N -0.94 -55.16 10.07 21.65 0.22 -54.94 16 24 Si 0.98 46.80 29.55 68.60 2.03 48.83 16 25 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 26 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 27 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 28 C 0.14 6.93 5.28 86.51 0.46 7.39 16 29 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 43 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.42 7.75 8.29 -92.71 -0.77 6.98 16 45 H 0.04 1.82 7.56 -2.39 -0.02 1.80 16 46 H 0.06 2.29 6.69 -2.39 -0.02 2.28 16 47 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 49 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 50 H 0.04 1.66 7.58 -2.39 -0.02 1.64 16 51 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 52 H 0.10 5.58 4.97 -2.39 -0.01 5.57 16 53 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 54 H 0.02 1.19 7.55 -2.39 -0.02 1.17 16 55 H 0.00 -0.09 8.06 -2.39 -0.02 -0.11 16 Total: -1.00 -76.81 424.62 2.47 -74.34 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.07 Total: 19.63 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 5.75 Total: 4.08 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -4.32 Total: -112.04 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -1.05 Total: -34.84 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -76.81 2.47 -74.34 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111955887.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.076 kcal (2) G-P(sol) polarization free energy of solvation -76.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds