Wall clock time and date at job start Tue Mar 31 2020 21:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47308 * 2 1 4 4 C 1.53001 * 109.46937 * 59.99781 * 3 2 1 5 5 C 1.53000 * 109.47105 * 299.99989 * 3 2 1 6 6 C 1.52998 * 109.47308 * 180.02562 * 3 2 1 7 7 C 1.50705 * 109.47361 * 180.02562 * 6 3 2 8 8 O 1.21277 * 119.99581 * 359.97438 * 7 6 3 9 9 N 1.34772 * 120.00082 * 180.02562 * 7 6 3 10 10 C 1.47163 * 121.06714 * 359.97438 * 9 7 6 11 11 C 1.53277 * 108.55407 * 231.15249 * 10 9 7 12 12 H 1.08995 * 109.51050 * 67.02582 * 11 10 9 13 13 C 1.52998 * 109.51518 * 187.12902 * 11 10 9 14 14 O 1.43103 * 109.22435 * 307.10425 * 11 10 9 15 15 C 1.42065 * 114.32906 * 61.14825 * 14 11 10 16 16 C 1.54511 * 110.33813 * 61.94687 * 15 14 11 17 17 C 1.55282 * 101.41930 * 83.74897 * 16 15 14 18 18 N 1.47476 * 104.76877 * 36.70321 * 17 16 15 19 19 C 1.36945 * 125.66021 * 155.88129 * 18 17 16 20 20 H 1.07997 * 119.99756 * 179.69400 * 19 18 17 21 21 C 1.38805 * 119.99878 * 359.69305 * 19 18 17 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47191 * 108.67988 * 335.61814 * 18 17 16 28 28 C 1.47306 * 121.06634 * 179.97438 * 9 7 6 29 29 H 1.09006 * 109.47237 * 59.99956 * 1 2 3 30 30 H 1.09001 * 109.47049 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47262 * 300.00058 * 1 2 3 32 32 H 1.09008 * 109.47064 * 240.00111 * 2 1 3 33 33 H 1.08999 * 109.47335 * 120.00418 * 2 1 3 34 34 H 1.09000 * 109.47134 * 179.97438 * 4 3 2 35 35 H 1.08996 * 109.47186 * 300.00178 * 4 3 2 36 36 H 1.09006 * 109.46943 * 60.00363 * 4 3 2 37 37 H 1.08994 * 109.47678 * 299.99600 * 5 3 2 38 38 H 1.09005 * 109.47245 * 59.99947 * 5 3 2 39 39 H 1.09001 * 109.46918 * 179.97438 * 5 3 2 40 40 H 1.09000 * 109.47262 * 59.99942 * 6 3 2 41 41 H 1.09006 * 109.47237 * 300.00044 * 6 3 2 42 42 H 1.09004 * 109.62248 * 350.87347 * 10 9 7 43 43 H 1.09000 * 109.62578 * 111.24795 * 10 9 7 44 44 H 1.09001 * 109.47091 * 60.00149 * 13 11 10 45 45 H 1.09003 * 109.47060 * 180.02562 * 13 11 10 46 46 H 1.08998 * 109.46913 * 300.00024 * 13 11 10 47 47 H 1.09001 * 111.01806 * 202.00198 * 16 15 14 48 48 H 1.09002 * 111.01310 * 325.84844 * 16 15 14 49 49 H 1.09003 * 110.50306 * 277.84429 * 17 16 15 50 50 H 1.09001 * 110.32549 * 155.47679 * 17 16 15 51 51 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 52 52 H 1.08999 * 109.90927 * 121.13301 * 27 18 17 53 53 H 1.08996 * 109.90911 * 242.21304 * 27 18 17 54 54 H 1.09003 * 109.68053 * 10.85476 * 28 9 7 55 55 H 1.08997 * 109.70928 * 250.33246 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5300 2.1637 -1.2492 6 6 3.5700 1.4425 -0.0006 7 6 4.0724 2.8633 0.0000 8 8 3.2843 3.7851 0.0004 9 7 5.3974 3.1095 -0.0009 10 6 6.3744 2.0090 -0.0020 11 6 7.3807 2.2489 1.1290 12 1 6.8767 2.1541 2.0908 13 6 8.5071 1.2175 1.0383 14 8 7.9260 3.5660 1.0029 15 6 6.9657 4.6086 1.0979 16 6 6.2866 4.5884 2.4856 17 6 7.3090 5.3861 3.3399 18 7 7.8138 6.4375 2.4373 19 6 8.3547 7.6333 2.8283 20 1 8.7015 8.3373 2.0864 21 6 8.4572 7.9403 4.1781 22 7 8.0350 7.0820 5.0822 23 14 9.1957 9.5712 4.7115 24 1 9.1906 9.6556 6.1940 25 1 10.5915 9.6687 4.2144 26 1 8.3913 10.6860 4.1500 27 6 7.6457 5.9856 1.0466 28 6 5.9143 4.4890 -0.0009 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.8937 3.1912 1.2495 35 1 0.4400 2.1637 1.2492 36 1 1.8933 1.6499 2.1393 37 1 1.8933 1.6500 -2.1392 38 1 0.4400 2.1638 -1.2493 39 1 1.8931 3.1915 -1.2490 40 1 3.9330 0.9288 -0.8908 41 1 3.9337 0.9285 0.8891 42 1 5.8594 1.0622 0.1609 43 1 6.8950 1.9825 -0.9593 44 1 9.0117 1.3142 0.0770 45 1 9.2220 1.3885 1.8432 46 1 8.0898 0.2148 1.1305 47 1 5.3201 5.0914 2.4552 48 1 6.1826 3.5682 2.8551 49 1 8.1249 4.7389 3.6618 50 1 6.8149 5.8323 4.2029 51 1 8.1070 7.2965 6.0255 52 1 7.0174 6.6897 0.5009 53 1 8.6188 5.9043 0.5625 54 1 5.0993 5.1863 0.1932 55 1 6.3659 4.7123 -0.9674 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131661560.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:45 Heat of formation + Delta-G solvation = -72.979552 kcal Electronic energy + Delta-G solvation = -32151.414790 eV Core-core repulsion = 28188.432473 eV Total energy + Delta-G solvation = -3962.982316 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.94091 -40.54419 -38.22411 -37.79000 -35.77690 -34.79401 -32.95698 -31.84472 -31.06000 -30.23188 -28.88397 -28.12066 -27.60585 -26.91815 -25.52082 -24.35402 -23.21755 -21.97709 -20.97931 -20.17691 -19.34218 -19.01414 -18.19516 -17.87578 -16.90926 -16.88332 -16.57105 -16.08100 -15.89906 -15.62229 -15.54433 -15.41024 -14.95040 -14.88430 -14.62054 -14.16091 -14.05138 -13.90802 -13.71345 -13.57099 -13.13901 -13.06344 -13.00700 -12.94650 -12.83630 -12.74200 -12.68858 -12.62578 -12.30173 -12.26171 -12.18158 -12.03984 -11.90197 -11.88536 -11.73495 -11.52786 -11.38157 -11.35772 -11.28886 -10.87130 -10.76095 -10.37098 -9.46805 -8.94572 -7.79620 -5.25313 1.44929 1.49241 1.55372 1.65308 1.88664 2.45588 2.62644 3.30231 3.42550 3.55833 3.59644 3.76122 3.80686 3.88273 3.95262 3.96673 4.07981 4.16530 4.25263 4.38190 4.41910 4.45826 4.50031 4.54107 4.61844 4.65891 4.69085 4.71458 4.76056 4.77754 4.78877 4.86938 4.90508 4.94942 4.95964 5.05760 5.12642 5.13742 5.15731 5.21558 5.26610 5.28307 5.34130 5.38375 5.42630 5.46973 5.53454 5.62784 5.72188 5.73557 6.24427 6.35449 6.42410 7.06294 7.22708 7.72523 8.37360 9.22504 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016481 B = 0.002929 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.561228 B = 9556.565610 C =10348.086731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.107 4.107 3 C -0.045 4.045 4 C -0.154 4.154 5 C -0.151 4.151 6 C -0.126 4.126 7 C 0.510 3.490 8 O -0.564 6.564 9 N -0.615 5.615 10 C 0.082 3.918 11 C 0.057 3.943 12 H 0.055 0.945 13 C -0.135 4.135 14 O -0.376 6.376 15 C 0.114 3.886 16 C -0.145 4.145 17 C 0.168 3.832 18 N -0.623 5.623 19 C -0.241 4.241 20 H 0.084 0.916 21 C -0.069 4.069 22 N -0.951 5.951 23 Si 0.985 3.015 24 H -0.293 1.293 25 H -0.277 1.277 26 H -0.275 1.275 27 C 0.146 3.854 28 C 0.109 3.891 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.130 0.870 43 H 0.093 0.907 44 H 0.071 0.929 45 H 0.049 0.951 46 H 0.107 0.893 47 H 0.058 0.942 48 H 0.077 0.923 49 H -0.016 1.016 50 H 0.071 0.929 51 H 0.247 0.753 52 H 0.047 0.953 53 H 0.032 0.968 54 H 0.082 0.918 55 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.893 -20.842 -13.595 26.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.145 4.145 3 C -0.045 4.045 4 C -0.211 4.211 5 C -0.208 4.208 6 C -0.165 4.165 7 C 0.301 3.699 8 O -0.443 6.443 9 N -0.348 5.348 10 C -0.040 4.040 11 C -0.001 4.001 12 H 0.073 0.927 13 C -0.193 4.193 14 O -0.295 6.295 15 C 0.073 3.927 16 C -0.184 4.184 17 C 0.042 3.958 18 N -0.350 5.350 19 C -0.370 4.370 20 H 0.102 0.898 21 C -0.261 4.261 22 N -0.600 5.600 23 Si 0.813 3.187 24 H -0.219 1.219 25 H -0.203 1.203 26 H -0.201 1.201 27 C 0.021 3.979 28 C -0.015 4.015 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.139 0.861 41 H 0.129 0.871 42 H 0.148 0.852 43 H 0.111 0.889 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.126 0.874 47 H 0.077 0.923 48 H 0.095 0.905 49 H 0.002 0.998 50 H 0.089 0.911 51 H 0.057 0.943 52 H 0.065 0.935 53 H 0.050 0.950 54 H 0.101 0.899 55 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.076 -20.219 -13.463 26.298 hybrid contribution 0.399 1.346 0.878 1.656 sum -9.677 -18.873 -12.585 24.662 Atomic orbital electron populations 1.21884 0.95918 1.01822 1.01781 1.21544 0.96118 0.93960 1.02855 1.20290 0.92365 0.96187 0.95674 1.22111 1.00995 1.01162 0.96865 1.22081 1.00947 1.01182 0.96600 1.21894 0.96870 0.91576 1.06195 1.21396 0.80750 0.93113 0.74602 1.90595 1.54682 1.48269 1.50783 1.48346 1.06227 1.06753 1.73517 1.22693 0.90512 0.90729 1.00032 1.22823 0.96214 0.83229 0.97828 0.92744 1.21726 0.96966 0.97447 1.03135 1.87879 1.33971 1.14442 1.93247 1.21913 0.88705 0.88139 0.93963 1.23285 0.98277 1.00245 0.96579 1.21633 0.92516 0.87889 0.93717 1.44797 1.72436 1.16684 1.01046 1.19454 1.32507 0.93114 0.91917 0.89838 1.25698 1.02475 1.02230 0.95675 1.70058 1.53449 1.36533 1.00005 0.85052 0.78331 0.78827 0.76510 1.21854 1.20291 1.20124 1.21227 0.97875 0.91495 0.87312 1.21819 0.96337 0.84902 0.98443 0.92715 0.91959 0.93148 0.90562 0.91160 0.93013 0.92552 0.93132 0.92367 0.92664 0.92814 0.86121 0.87078 0.85216 0.88911 0.90998 0.93157 0.87418 0.92303 0.90504 0.99815 0.91092 0.94292 0.93498 0.94987 0.89947 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.21 71.98 0.66 -1.26 16 2 C -0.11 -1.24 4.99 30.59 0.15 -1.09 16 3 C -0.04 -0.75 0.54 -52.18 -0.03 -0.77 16 4 C -0.15 -3.32 7.82 71.98 0.56 -2.76 16 5 C -0.15 -2.89 7.82 71.98 0.56 -2.32 16 6 C -0.13 -1.89 3.14 29.85 0.09 -1.80 16 7 C 0.51 12.40 7.13 87.66 0.62 13.03 16 8 O -0.56 -18.16 10.83 -3.02 -0.03 -18.19 16 9 N -0.62 -14.83 2.91 -818.38 -2.38 -17.21 16 10 C 0.08 1.40 5.81 86.35 0.50 1.90 16 11 C 0.06 1.33 3.17 30.69 0.10 1.43 16 12 H 0.05 1.40 6.13 -2.39 -0.01 1.39 16 13 C -0.14 -2.33 9.57 71.98 0.69 -1.64 16 14 O -0.38 -12.88 9.87 -148.97 -1.47 -14.35 16 15 C 0.11 4.17 0.83 -10.21 -0.01 4.16 16 16 C -0.15 -5.99 5.92 31.89 0.19 -5.80 16 17 C 0.17 8.89 5.91 86.98 0.51 9.40 16 18 N -0.62 -34.12 3.40 -691.99 -2.35 -36.47 16 19 C -0.24 -14.10 10.28 84.03 0.86 -13.24 16 20 H 0.08 4.63 7.83 -2.91 -0.02 4.61 16 21 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 22 N -0.95 -58.72 10.09 21.65 0.22 -58.51 16 23 Si 0.99 46.98 29.55 68.60 2.03 49.00 16 24 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 27 C 0.15 6.48 6.61 86.47 0.57 7.05 16 28 C 0.11 3.33 5.17 86.08 0.44 3.78 16 29 H 0.05 0.70 6.43 -2.38 -0.02 0.68 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.69 6.43 -2.39 -0.02 0.68 16 32 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 1.49 5.51 -2.39 -0.01 1.47 16 35 H 0.06 1.14 6.43 -2.39 -0.02 1.12 16 36 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.05 1.00 6.43 -2.38 -0.02 0.99 16 39 H 0.05 1.39 5.51 -2.39 -0.01 1.38 16 40 H 0.12 1.13 8.01 -2.39 -0.02 1.11 16 41 H 0.11 1.28 7.67 -2.38 -0.02 1.26 16 42 H 0.13 1.18 6.05 -2.39 -0.01 1.17 16 43 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 45 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.06 2.53 7.86 -2.39 -0.02 2.51 16 48 H 0.08 2.86 5.98 -2.39 -0.01 2.84 16 49 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 50 H 0.07 4.26 5.86 -2.39 -0.01 4.25 16 51 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 52 H 0.05 1.99 7.79 -2.39 -0.02 1.97 16 53 H 0.03 1.44 8.07 -2.39 -0.02 1.42 16 54 H 0.08 2.88 6.89 -2.39 -0.02 2.86 16 55 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -74.72 400.15 3.82 -70.90 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.86 Total: 18.31 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 6.96 Total: 6.52 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -4.52 Total: -112.19 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -1.50 Total: -32.54 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.00 kcal Total: -74.72 3.82 -70.90 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131661560.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.084 kcal (2) G-P(sol) polarization free energy of solvation -74.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds