Wall clock time and date at job start Tue Mar 31 2020 21:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46763 * 2 1 4 4 C 1.53001 * 109.47303 * 59.99857 * 3 2 1 5 5 C 1.53000 * 109.47172 * 299.99880 * 3 2 1 6 6 C 1.53002 * 109.47227 * 179.97438 * 3 2 1 7 7 C 1.50695 * 109.47108 * 179.97438 * 6 3 2 8 8 O 1.21286 * 120.00404 * 0.02562 * 7 6 3 9 9 N 1.34777 * 120.00049 * 179.97438 * 7 6 3 10 10 C 1.47170 * 121.07659 * 0.02562 * 9 7 6 11 11 C 1.53274 * 108.57058 * 128.80164 * 10 9 7 12 12 H 1.09005 * 109.51359 * 293.01153 * 11 10 9 13 13 C 1.52997 * 109.51403 * 172.91277 * 11 10 9 14 14 O 1.43122 * 109.22885 * 52.98504 * 11 10 9 15 15 C 1.41886 * 114.37128 * 299.10529 * 14 11 10 16 16 C 1.54348 * 110.76443 * 183.35321 * 15 14 11 17 17 C 1.54456 * 102.87378 * 83.67160 * 16 15 14 18 18 N 1.47086 * 107.29741 * 21.48642 * 17 16 15 19 19 C 1.36938 * 125.62913 * 181.02481 * 18 17 16 20 20 H 1.07997 * 119.99799 * 179.97438 * 19 18 17 21 21 C 1.38806 * 120.00356 * 359.97438 * 19 18 17 22 22 N 1.31620 * 120.00037 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00335 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46900 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47253 * 120.00097 * 23 21 19 26 26 H 1.48503 * 109.46866 * 240.00143 * 23 21 19 27 27 C 1.47566 * 108.73667 * 1.00579 * 18 17 16 28 28 C 1.47333 * 121.07863 * 180.02562 * 9 7 6 29 29 H 1.09000 * 109.46233 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46714 * 299.99650 * 1 2 3 31 31 H 1.08995 * 109.46970 * 60.00211 * 1 2 3 32 32 H 1.08993 * 109.47001 * 239.99980 * 2 1 3 33 33 H 1.09005 * 109.46982 * 119.99652 * 2 1 3 34 34 H 1.08999 * 109.47260 * 179.97438 * 4 3 2 35 35 H 1.08996 * 109.47176 * 299.99992 * 4 3 2 36 36 H 1.09005 * 109.47269 * 59.99842 * 4 3 2 37 37 H 1.09001 * 109.47039 * 300.00132 * 5 3 2 38 38 H 1.09004 * 109.46995 * 60.00408 * 5 3 2 39 39 H 1.08999 * 109.47053 * 180.02562 * 5 3 2 40 40 H 1.09001 * 109.46938 * 59.99895 * 6 3 2 41 41 H 1.08995 * 109.46902 * 300.00031 * 6 3 2 42 42 H 1.09004 * 109.61930 * 9.07823 * 10 9 7 43 43 H 1.08997 * 109.77492 * 248.61749 * 10 9 7 44 44 H 1.09002 * 109.47153 * 60.00037 * 13 11 10 45 45 H 1.09001 * 109.46832 * 300.00227 * 13 11 10 46 46 H 1.09004 * 109.47261 * 180.02562 * 13 11 10 47 47 H 1.08996 * 110.73666 * 202.02016 * 16 15 14 48 48 H 1.08999 * 110.72943 * 325.32790 * 16 15 14 49 49 H 1.09003 * 109.88301 * 262.05909 * 17 16 15 50 50 H 1.08994 * 110.00493 * 140.98459 * 17 16 15 51 51 H 0.96999 * 120.00515 * 179.97438 * 22 21 19 52 52 H 1.09004 * 110.37658 * 217.84457 * 27 18 17 53 53 H 1.09002 * 110.37935 * 95.50233 * 27 18 17 54 54 H 1.08995 * 109.67763 * 348.89394 * 28 9 7 55 55 H 1.09005 * 109.67360 * 109.40031 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 1.2492 5 6 1.5300 2.1637 -1.2493 6 6 3.5700 1.4426 0.0006 7 6 4.0722 2.8635 0.0000 8 8 3.2840 3.7853 -0.0004 9 7 5.3972 3.1099 0.0009 10 6 6.3745 2.0095 0.0020 11 6 7.3803 2.2488 -1.1296 12 1 6.8758 2.1539 -2.0912 13 6 8.5063 1.2169 -1.0393 14 8 7.9272 3.5654 -1.0035 15 6 6.9692 4.6083 -1.0917 16 6 7.6561 5.9890 -1.0294 17 6 8.0935 6.2221 -2.4923 18 7 7.2551 5.3624 -3.3417 19 6 7.3413 5.2599 -4.7045 20 1 6.6774 4.5968 -5.2392 21 6 8.2819 6.0083 -5.3987 22 7 9.0907 6.8168 -4.7471 23 14 8.4001 5.8679 -7.2577 24 1 7.3873 4.8979 -7.7461 25 1 8.1499 7.1968 -7.8713 26 1 9.7574 5.3969 -7.6332 27 6 6.3060 4.6283 -2.4827 28 6 5.9143 4.4895 0.0009 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.8936 3.1913 1.2494 35 1 0.4400 2.1637 1.2492 36 1 1.8932 1.6500 2.1393 37 1 1.8933 1.6499 -2.1392 38 1 0.4399 2.1637 -1.2492 39 1 1.8936 3.1913 -1.2495 40 1 3.9337 0.9287 -0.8891 41 1 3.9329 0.9290 0.8908 42 1 5.8596 1.0625 -0.1601 43 1 6.8983 1.9824 0.9575 44 1 8.0885 0.2143 -1.1310 45 1 9.0114 1.3135 -0.0782 46 1 9.2213 1.3879 -1.8440 47 1 6.9512 6.7567 -0.7105 48 1 8.5219 5.9598 -0.3678 49 1 9.1427 5.9522 -2.6130 50 1 7.9465 7.2675 -2.7634 51 1 9.7483 7.3395 -5.2321 52 1 6.1676 3.6121 -2.8520 53 1 5.3503 5.1509 -2.4400 54 1 5.1002 5.1865 -0.1976 55 1 6.3616 4.7138 0.9693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131661563.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:57 Heat of formation + Delta-G solvation = -75.226053 kcal Electronic energy + Delta-G solvation = -32343.430770 eV Core-core repulsion = 28380.351038 eV Total energy + Delta-G solvation = -3963.079732 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.91624 -40.53255 -38.21713 -37.76007 -35.74711 -34.86608 -32.97190 -31.84466 -31.11092 -30.16596 -28.75565 -28.12354 -27.68394 -26.97695 -25.54192 -24.35636 -23.16181 -21.99473 -21.01461 -20.10093 -19.36061 -18.97827 -18.19053 -17.88131 -16.89731 -16.83590 -16.58413 -16.10728 -15.82056 -15.63009 -15.51247 -15.50144 -15.04912 -14.97893 -14.58019 -14.04820 -14.00973 -13.96350 -13.65923 -13.57994 -13.13686 -13.09237 -13.01762 -12.96477 -12.83866 -12.76194 -12.67235 -12.61737 -12.25906 -12.20857 -12.06291 -12.00609 -11.98367 -11.90296 -11.73396 -11.71161 -11.36626 -11.35891 -11.29574 -10.86718 -10.72944 -10.36219 -9.45636 -8.93191 -7.88193 -5.24066 1.41786 1.43581 1.53735 1.65115 1.90692 2.45415 2.64520 3.29595 3.43048 3.55573 3.64224 3.75248 3.77605 3.90832 3.94415 4.00457 4.09368 4.15893 4.24549 4.39836 4.42336 4.45884 4.52121 4.56389 4.62437 4.65634 4.67547 4.69348 4.71584 4.77385 4.80822 4.89377 4.92453 4.94336 4.95755 5.03810 5.12237 5.13464 5.15490 5.20911 5.26686 5.27807 5.32777 5.37668 5.40156 5.46504 5.61221 5.62280 5.72682 5.73348 6.15051 6.38684 6.42456 7.06217 7.22448 7.71941 8.37161 9.22411 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013636 B = 0.003241 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.860823 B = 8637.568928 C = 9292.677814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.108 4.108 3 C -0.044 4.044 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.127 4.127 7 C 0.511 3.489 8 O -0.563 6.563 9 N -0.618 5.618 10 C 0.085 3.915 11 C 0.059 3.941 12 H 0.042 0.958 13 C -0.134 4.134 14 O -0.370 6.370 15 C 0.108 3.892 16 C -0.119 4.119 17 C 0.192 3.808 18 N -0.620 5.620 19 C -0.245 4.245 20 H 0.075 0.925 21 C -0.063 4.063 22 N -0.948 5.948 23 Si 0.980 3.020 24 H -0.267 1.267 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.124 3.876 28 C 0.108 3.892 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.046 0.954 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.106 0.894 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.076 0.924 46 H 0.044 0.956 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.011 0.989 50 H 0.009 0.991 51 H 0.248 0.752 52 H 0.034 0.966 53 H 0.014 0.986 54 H 0.085 0.915 55 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.685 -17.597 15.848 25.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.145 4.145 3 C -0.045 4.045 4 C -0.207 4.207 5 C -0.211 4.211 6 C -0.166 4.166 7 C 0.302 3.698 8 O -0.442 6.442 9 N -0.351 5.351 10 C -0.037 4.037 11 C 0.001 3.999 12 H 0.060 0.940 13 C -0.191 4.191 14 O -0.289 6.289 15 C 0.066 3.934 16 C -0.158 4.158 17 C 0.067 3.933 18 N -0.346 5.346 19 C -0.373 4.373 20 H 0.093 0.907 21 C -0.257 4.257 22 N -0.597 5.597 23 Si 0.807 3.193 24 H -0.192 1.192 25 H -0.217 1.217 26 H -0.215 1.215 27 C -0.002 4.002 28 C -0.016 4.016 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.124 0.876 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.116 0.884 44 H 0.123 0.877 45 H 0.095 0.905 46 H 0.063 0.937 47 H 0.110 0.890 48 H 0.110 0.890 49 H 0.030 0.970 50 H 0.027 0.973 51 H 0.057 0.943 52 H 0.052 0.948 53 H 0.031 0.969 54 H 0.103 0.897 55 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.811 -17.016 15.712 25.559 hybrid contribution 0.170 0.740 -1.606 1.776 sum -10.640 -16.276 14.106 24.023 Atomic orbital electron populations 1.21881 0.95822 1.01833 1.01816 1.21549 0.96202 0.94016 1.02781 1.20287 0.92289 0.96169 0.95737 1.22074 1.00959 1.01225 0.96453 1.22111 1.01033 1.01159 0.96819 1.21888 0.96964 0.91774 1.06022 1.21350 0.80828 0.93053 0.74613 1.90585 1.54639 1.48172 1.50832 1.48383 1.06169 1.07053 1.73475 1.22655 0.90424 0.90714 0.99944 1.22736 0.96164 0.83561 0.97393 0.94030 1.21700 0.96941 0.97377 1.03104 1.87820 1.33761 1.14230 1.93093 1.22052 0.89276 0.88938 0.93101 1.22719 1.01361 0.93929 0.97741 1.20870 0.93141 0.92616 0.86696 1.44720 1.38719 1.48775 1.02384 1.19405 1.14992 1.20817 0.82128 0.90690 1.25655 0.98234 0.99062 1.02709 1.70194 1.23820 1.30723 1.34981 0.84999 0.77427 0.77279 0.79547 1.19187 1.21673 1.21534 1.22001 0.92022 0.94818 0.91370 1.21864 0.96368 0.84702 0.98662 0.91972 0.92549 0.93205 0.91422 0.90477 0.92662 0.92603 0.92281 0.93503 0.92426 0.92970 0.87566 0.86025 0.85600 0.88431 0.87676 0.90525 0.93673 0.88984 0.89024 0.97044 0.97276 0.94286 0.94762 0.96860 0.89657 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.21 71.98 0.66 -1.34 16 2 C -0.11 -1.35 4.99 30.60 0.15 -1.20 16 3 C -0.04 -0.77 0.54 -52.18 -0.03 -0.80 16 4 C -0.15 -2.87 7.82 71.98 0.56 -2.31 16 5 C -0.15 -3.48 7.82 71.98 0.56 -2.92 16 6 C -0.13 -2.05 3.14 29.85 0.09 -1.96 16 7 C 0.51 12.72 7.13 87.66 0.62 13.35 16 8 O -0.56 -18.12 10.84 -3.05 -0.03 -18.15 16 9 N -0.62 -15.18 2.95 -818.71 -2.42 -17.60 16 10 C 0.08 1.54 5.81 86.34 0.50 2.05 16 11 C 0.06 1.55 3.19 30.69 0.10 1.65 16 12 H 0.04 1.30 6.25 -2.38 -0.01 1.28 16 13 C -0.13 -2.66 9.57 71.98 0.69 -1.98 16 14 O -0.37 -13.07 9.92 -148.95 -1.48 -14.55 16 15 C 0.11 3.90 0.83 -10.18 -0.01 3.90 16 16 C -0.12 -4.60 6.12 31.55 0.19 -4.40 16 17 C 0.19 10.04 5.39 86.76 0.47 10.51 16 18 N -0.62 -34.01 3.40 -692.78 -2.36 -36.36 16 19 C -0.24 -14.49 10.28 84.03 0.86 -13.62 16 20 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 21 C -0.06 -3.76 5.49 84.86 0.47 -3.29 16 22 N -0.95 -58.99 10.31 21.65 0.22 -58.77 16 23 Si 0.98 47.34 29.55 68.60 2.03 49.37 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 26 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 27 C 0.12 5.53 6.18 86.55 0.53 6.07 16 28 C 0.11 3.16 5.30 86.00 0.46 3.61 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.73 6.43 -2.39 -0.02 0.72 16 31 H 0.05 0.72 6.43 -2.39 -0.02 0.70 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.05 1.41 5.51 -2.39 -0.01 1.40 16 35 H 0.05 1.01 6.43 -2.39 -0.02 1.00 16 36 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.20 6.43 -2.38 -0.02 1.19 16 39 H 0.05 1.55 5.51 -2.39 -0.01 1.53 16 40 H 0.11 1.45 7.67 -2.39 -0.02 1.43 16 41 H 0.12 1.24 8.01 -2.39 -0.02 1.22 16 42 H 0.13 1.39 6.05 -2.39 -0.01 1.37 16 43 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 47 H 0.09 3.18 8.00 -2.39 -0.02 3.16 16 48 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 49 H 0.01 0.67 7.38 -2.39 -0.02 0.65 16 50 H 0.01 0.53 7.49 -2.39 -0.02 0.51 16 51 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 52 H 0.03 1.54 6.09 -2.38 -0.01 1.53 16 53 H 0.01 0.64 7.82 -2.39 -0.02 0.62 16 54 H 0.09 2.81 6.85 -2.39 -0.02 2.79 16 55 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 Total: -1.00 -76.09 401.17 3.71 -72.37 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.85 Total: 16.37 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 6.89 Total: 7.31 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -4.55 Total: -112.73 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -1.51 Total: -32.70 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -76.09 3.71 -72.37 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131661563.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.851 kcal (2) G-P(sol) polarization free energy of solvation -76.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds