Wall clock time and date at job start Tue Mar 31 2020 21:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52999 * 109.47065 * 2 1 4 4 C 1.53003 * 109.47111 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47323 * 299.99966 * 4 3 2 6 6 C 1.52998 * 109.47076 * 60.00576 * 4 3 2 7 7 C 1.50707 * 109.47005 * 180.02562 * 4 3 2 8 8 O 1.21280 * 120.00113 * 5.52551 * 7 4 3 9 9 N 1.34777 * 119.99674 * 185.52931 * 7 4 3 10 10 C 1.47151 * 121.05644 * 354.89412 * 9 7 4 11 11 C 1.53292 * 108.51136 * 231.12187 * 10 9 7 12 12 H 1.08999 * 109.50875 * 67.06703 * 11 10 9 13 13 C 1.52993 * 109.51191 * 187.16777 * 11 10 9 14 14 O 1.43099 * 109.22982 * 307.09541 * 11 10 9 15 15 C 1.42069 * 114.32102 * 61.19208 * 14 11 10 16 16 C 1.54512 * 110.32736 * 61.90109 * 15 14 11 17 17 C 1.55023 * 101.50183 * 83.97697 * 16 15 14 18 18 N 1.47486 * 104.91142 * 36.34804 * 17 16 15 19 19 C 1.36936 * 125.65494 * 156.00082 * 18 17 16 20 20 H 1.08001 * 120.00017 * 180.02562 * 19 18 17 21 21 C 1.38816 * 119.99854 * 0.02562 * 19 18 17 22 22 N 1.31615 * 120.00011 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99679 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47036 * 90.00565 * 23 21 19 25 25 H 1.48501 * 109.46815 * 210.00269 * 23 21 19 26 26 H 1.48496 * 109.47231 * 330.00332 * 23 21 19 27 27 C 1.47182 * 108.68684 * 335.97940 * 18 17 16 28 28 C 1.47306 * 121.05050 * 174.61214 * 9 7 4 29 29 H 1.09005 * 109.47212 * 59.99990 * 1 2 3 30 30 H 1.08999 * 109.47231 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47354 * 299.99850 * 1 2 3 32 32 H 1.09004 * 109.47354 * 240.00150 * 2 1 3 33 33 H 1.09005 * 109.47212 * 120.00010 * 2 1 3 34 34 H 1.08996 * 109.47085 * 299.99803 * 3 2 1 35 35 H 1.09004 * 109.47406 * 60.00064 * 3 2 1 36 36 H 1.08998 * 109.46554 * 77.22266 * 5 4 3 37 37 H 1.09000 * 109.46809 * 197.22650 * 5 4 3 38 38 H 1.08995 * 109.47170 * 317.22779 * 5 4 3 39 39 H 1.08998 * 109.47368 * 66.01484 * 6 4 3 40 40 H 1.09004 * 109.47096 * 186.02286 * 6 4 3 41 41 H 1.09001 * 109.46607 * 306.01474 * 6 4 3 42 42 H 1.09005 * 109.62811 * 350.82460 * 10 9 7 43 43 H 1.08994 * 109.63400 * 111.41495 * 10 9 7 44 44 H 1.09002 * 109.47154 * 59.99871 * 13 11 10 45 45 H 1.09005 * 109.47157 * 180.02562 * 13 11 10 46 46 H 1.09004 * 109.47364 * 299.99572 * 13 11 10 47 47 H 1.09008 * 111.01574 * 202.03150 * 16 15 14 48 48 H 1.09002 * 111.02373 * 325.88117 * 16 15 14 49 49 H 1.08998 * 110.34745 * 155.20746 * 17 16 15 50 50 H 1.08999 * 110.34772 * 277.38050 * 17 16 15 51 51 H 0.97001 * 119.99752 * 179.97438 * 22 21 19 52 52 H 1.09008 * 109.91089 * 242.16204 * 27 18 17 53 53 H 1.09001 * 109.91136 * 120.88805 * 27 18 17 54 54 H 1.08999 * 109.68261 * 250.31955 * 28 9 7 55 55 H 1.09002 * 109.68298 * 10.87160 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0795 0.7215 1.2502 6 6 4.0804 0.7212 -1.2483 7 6 4.0722 2.8634 0.0013 8 8 3.2887 3.7836 0.1024 9 7 5.3922 3.1115 -0.1106 10 6 6.3726 2.0141 -0.1226 11 6 7.4576 2.3194 0.9163 12 1 7.0262 2.2770 1.9164 13 6 8.5810 1.2873 0.8002 14 8 7.9844 3.6282 0.6770 15 6 7.0275 4.6727 0.7847 16 6 6.4522 4.7280 2.2177 17 6 7.5239 5.5771 2.9484 18 7 7.9604 6.5749 1.9539 19 6 8.5214 7.7915 2.2371 20 1 8.8081 8.4541 1.4338 21 6 8.7216 8.1733 3.5566 22 7 8.3726 7.3656 4.5355 23 14 9.4875 9.8327 3.9429 24 1 8.4173 10.8543 4.0701 25 1 10.2420 9.7446 5.2189 26 1 10.4121 10.2183 2.8467 27 6 7.6936 6.0458 0.6066 28 6 5.8989 4.4895 -0.2308 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.9863 -0.3556 1.1114 37 1 5.1259 0.9774 1.4160 38 1 3.4890 1.0289 2.1133 39 1 3.8081 1.2934 -2.1352 40 1 5.1651 0.6269 -1.1956 41 1 3.6318 -0.2707 -1.3039 42 1 5.8764 1.0771 0.1305 43 1 6.8240 1.9372 -1.1117 44 1 9.0130 1.3314 -0.1996 45 1 9.3519 1.5047 1.5395 46 1 8.1782 0.2902 0.9784 47 1 5.4828 5.2263 2.2308 48 1 6.3822 3.7297 2.6497 49 1 7.0881 6.0723 3.8162 50 1 8.3621 4.9500 3.2519 51 1 8.5129 7.6322 5.4575 52 1 8.6296 5.9361 0.0588 53 1 7.0230 6.7171 0.0703 54 1 6.2781 4.6545 -1.2392 55 1 5.0957 5.1956 -0.0199 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131682353.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:01 Heat of formation + Delta-G solvation = -64.859842 kcal Electronic energy + Delta-G solvation = -32475.130824 eV Core-core repulsion = 28512.500605 eV Total energy + Delta-G solvation = -3962.630219 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.22610 -40.51949 -38.03543 -37.69801 -35.97142 -34.82553 -33.48774 -32.83677 -31.08090 -30.03812 -28.32034 -28.07209 -27.38295 -27.13319 -25.72612 -23.93510 -23.22251 -22.00163 -21.57358 -20.48680 -19.79708 -19.02855 -17.96809 -17.69228 -17.31523 -16.89479 -16.50716 -16.20510 -15.90268 -15.82673 -15.52023 -15.21791 -15.01910 -14.85627 -14.62225 -14.15751 -14.07016 -13.82657 -13.69718 -13.59540 -13.40903 -13.23526 -13.08585 -12.98717 -12.96259 -12.80765 -12.74843 -12.56537 -12.33166 -12.27957 -12.23333 -12.01383 -11.97656 -11.90527 -11.80676 -11.75105 -11.49427 -11.32023 -11.28601 -10.92083 -10.77945 -10.53178 -9.53534 -8.95561 -7.80636 -5.26028 1.44609 1.47621 1.55390 1.56320 1.80891 2.44607 2.60379 3.28056 3.31636 3.46316 3.56765 3.67989 3.76473 3.82216 3.88310 3.92505 4.03874 4.14047 4.16541 4.28058 4.31817 4.36230 4.41979 4.46681 4.52771 4.59025 4.63633 4.69975 4.72515 4.75830 4.79293 4.82443 4.85226 4.92541 4.93025 4.95982 5.03959 5.07367 5.10188 5.13597 5.21976 5.24143 5.25849 5.35473 5.38782 5.41806 5.47625 5.52004 5.54253 5.70846 6.22946 6.31622 6.34287 7.05397 7.08420 7.71473 8.36471 9.22092 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018601 B = 0.002964 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.963429 B = 9443.611484 C =10087.172083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.092 4.092 4 C -0.074 4.074 5 C -0.156 4.156 6 C -0.154 4.154 7 C 0.517 3.483 8 O -0.586 6.586 9 N -0.608 5.608 10 C 0.063 3.937 11 C 0.056 3.944 12 H 0.054 0.946 13 C -0.137 4.137 14 O -0.373 6.373 15 C 0.114 3.886 16 C -0.146 4.146 17 C 0.169 3.831 18 N -0.623 5.623 19 C -0.240 4.240 20 H 0.085 0.915 21 C -0.069 4.069 22 N -0.951 5.951 23 Si 0.986 3.014 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.268 1.268 27 C 0.147 3.853 28 C 0.105 3.895 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.145 0.855 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.051 0.949 46 H 0.109 0.891 47 H 0.055 0.945 48 H 0.076 0.924 49 H 0.070 0.930 50 H -0.015 1.015 51 H 0.247 0.753 52 H 0.035 0.965 53 H 0.047 0.953 54 H 0.088 0.912 55 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.187 -23.209 -12.372 27.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.130 4.130 4 C -0.077 4.077 5 C -0.213 4.213 6 C -0.211 4.211 7 C 0.307 3.693 8 O -0.465 6.465 9 N -0.340 5.340 10 C -0.058 4.058 11 C -0.002 4.002 12 H 0.072 0.928 13 C -0.194 4.194 14 O -0.292 6.292 15 C 0.073 3.927 16 C -0.185 4.185 17 C 0.044 3.956 18 N -0.350 5.350 19 C -0.369 4.369 20 H 0.102 0.898 21 C -0.261 4.261 22 N -0.601 5.601 23 Si 0.813 3.187 24 H -0.211 1.211 25 H -0.219 1.219 26 H -0.193 1.193 27 C 0.021 3.979 28 C -0.018 4.018 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.125 0.875 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.117 0.883 42 H 0.162 0.838 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.127 0.873 47 H 0.074 0.926 48 H 0.095 0.905 49 H 0.088 0.912 50 H 0.003 0.997 51 H 0.057 0.943 52 H 0.053 0.947 53 H 0.065 0.935 54 H 0.106 0.894 55 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.340 -22.571 -12.220 27.313 hybrid contribution 0.216 1.692 0.795 1.882 sum -9.124 -20.879 -11.425 25.489 Atomic orbital electron populations 1.21788 0.95988 1.02139 1.01349 1.21636 0.95774 0.94680 1.03531 1.21420 0.91837 0.98285 1.01452 1.20826 0.97390 0.89633 0.99882 1.22252 1.01483 1.02530 0.94992 1.22316 1.03115 1.01506 0.94149 1.21494 0.81055 0.92660 0.74101 1.90671 1.56031 1.48425 1.51406 1.48191 1.06278 1.07032 1.72496 1.23346 0.89865 0.91469 1.01115 1.22872 0.96026 0.83522 0.97792 0.92823 1.21748 0.96829 0.97350 1.03457 1.87880 1.35344 1.14848 1.91161 1.21974 0.88606 0.88173 0.93901 1.23242 0.98456 1.00107 0.96664 1.21549 0.92343 0.88558 0.93127 1.44791 1.72568 1.16476 1.01117 1.19494 1.32403 0.92492 0.92498 0.89763 1.25709 1.02616 1.02466 0.95343 1.70069 1.54175 1.37285 0.98538 0.84973 0.77838 0.78665 0.77202 1.21137 1.21897 1.19290 1.21229 0.97684 0.90840 0.88125 1.21972 0.95880 0.84722 0.99255 0.93246 0.91348 0.93656 0.89888 0.90525 0.93120 0.93647 0.87548 0.91218 0.92852 0.93045 0.89600 0.88305 0.83786 0.88633 0.90793 0.92941 0.87285 0.92610 0.90540 0.91210 0.99656 0.94296 0.94717 0.93508 0.89362 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.91 71.98 0.71 -1.21 16 2 C -0.12 -1.39 5.28 30.59 0.16 -1.23 16 3 C -0.09 -1.73 3.51 30.60 0.11 -1.62 16 4 C -0.07 -1.30 0.52 -52.92 -0.03 -1.33 16 5 C -0.16 -2.13 7.19 71.98 0.52 -1.61 16 6 C -0.15 -1.71 7.81 71.98 0.56 -1.15 16 7 C 0.52 14.23 6.48 87.66 0.57 14.80 16 8 O -0.59 -21.81 15.47 -3.03 -0.05 -21.85 16 9 N -0.61 -15.77 2.89 -817.67 -2.36 -18.13 16 10 C 0.06 1.15 3.35 86.35 0.29 1.44 16 11 C 0.06 1.33 3.06 30.69 0.09 1.43 16 12 H 0.05 1.42 6.02 -2.39 -0.01 1.40 16 13 C -0.14 -2.33 9.57 71.98 0.69 -1.64 16 14 O -0.37 -12.88 9.87 -148.97 -1.47 -14.35 16 15 C 0.11 4.29 0.83 -10.09 -0.01 4.28 16 16 C -0.15 -6.18 5.92 31.80 0.19 -6.00 16 17 C 0.17 9.07 5.88 86.88 0.51 9.58 16 18 N -0.62 -34.33 3.40 -692.51 -2.36 -36.69 16 19 C -0.24 -14.09 10.28 84.03 0.86 -13.23 16 20 H 0.08 4.69 7.83 -2.91 -0.02 4.67 16 21 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 22 N -0.95 -58.99 10.09 21.65 0.22 -58.78 16 23 Si 0.99 47.16 29.55 68.60 2.03 49.18 16 24 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 27 C 0.15 6.55 6.61 86.47 0.57 7.12 16 28 C 0.11 3.37 5.22 86.20 0.45 3.82 16 29 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 0.69 6.30 -2.39 -0.02 0.68 16 33 H 0.08 0.74 6.84 -2.38 -0.02 0.73 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.04 1.07 8.03 -2.38 -0.02 1.05 16 36 H 0.11 0.74 7.31 -2.39 -0.02 0.72 16 37 H 0.07 0.97 4.93 -2.39 -0.01 0.96 16 38 H 0.05 0.89 8.02 -2.39 -0.02 0.87 16 39 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.09 0.71 4.72 -2.38 -0.01 0.70 16 41 H 0.10 0.61 6.13 -2.39 -0.01 0.60 16 42 H 0.14 1.69 2.81 -2.38 -0.01 1.69 16 43 H 0.10 1.45 8.04 -2.39 -0.02 1.43 16 44 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 47 H 0.06 2.49 7.88 -2.38 -0.02 2.47 16 48 H 0.08 2.93 5.98 -2.39 -0.01 2.92 16 49 H 0.07 4.23 5.88 -2.39 -0.01 4.22 16 50 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 51 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 52 H 0.03 1.56 8.06 -2.38 -0.02 1.54 16 53 H 0.05 2.00 7.79 -2.39 -0.02 1.98 16 54 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 55 H 0.08 2.94 6.89 -2.39 -0.02 2.92 16 Total: -1.00 -77.62 398.71 3.59 -74.03 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.87 Total: 16.75 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 6.72 Total: 9.84 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -4.50 Total: -113.59 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -1.52 Total: -36.21 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.18 kcal Total: -77.62 3.59 -74.03 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131682353.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.170 kcal (2) G-P(sol) polarization free energy of solvation -77.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds