Wall clock time and date at job start Tue Mar 31 2020 21:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47024 * 2 1 4 4 C 1.53002 * 109.46721 * 64.99777 * 3 2 1 5 5 C 1.53006 * 109.46883 * 185.97916 * 4 3 2 6 6 C 1.52992 * 109.47549 * 184.99997 * 3 2 1 7 7 C 1.50699 * 109.46963 * 68.27840 * 6 3 2 8 8 O 1.21281 * 120.00143 * 6.05728 * 7 6 3 9 9 N 1.34784 * 120.00053 * 186.05105 * 7 6 3 10 10 C 1.47160 * 121.05339 * 0.02562 * 9 7 6 11 11 C 1.53290 * 108.49835 * 231.16644 * 10 9 7 12 12 H 1.08997 * 109.51236 * 66.95316 * 11 10 9 13 13 C 1.53000 * 109.51117 * 187.05235 * 11 10 9 14 14 O 1.43085 * 109.22205 * 307.02467 * 11 10 9 15 15 C 1.42061 * 114.39451 * 61.14812 * 14 11 10 16 16 C 1.54516 * 110.33610 * 177.41797 * 15 14 11 17 17 C 1.55029 * 101.52966 * 276.07510 * 16 15 14 18 18 N 1.47479 * 104.89674 * 323.61821 * 17 16 15 19 19 C 1.36937 * 125.66300 * 203.75284 * 18 17 16 20 20 H 1.08004 * 119.99552 * 150.46999 * 19 18 17 21 21 C 1.38811 * 120.00051 * 330.46608 * 19 18 17 22 22 N 1.31620 * 120.00028 * 166.06875 * 21 19 18 23 23 Si 1.86800 * 120.00054 * 346.07324 * 21 19 18 24 24 H 1.48503 * 109.46965 * 85.58330 * 23 21 19 25 25 H 1.48503 * 109.47020 * 205.58361 * 23 21 19 26 26 H 1.48493 * 109.46977 * 325.58257 * 23 21 19 27 27 C 1.47192 * 108.67048 * 24.02028 * 18 17 16 28 28 C 1.47284 * 121.05810 * 180.02562 * 9 7 6 29 29 H 1.08998 * 109.47411 * 299.99486 * 1 2 3 30 30 H 1.08995 * 109.47633 * 60.00060 * 1 2 3 31 31 H 1.09002 * 109.46632 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47411 * 240.00514 * 2 1 3 33 33 H 1.09002 * 109.47348 * 119.99318 * 2 1 3 34 34 H 1.09001 * 109.46758 * 305.00290 * 3 2 1 35 35 H 1.09002 * 109.47602 * 305.97835 * 4 3 2 36 36 H 1.08996 * 109.47325 * 65.98739 * 4 3 2 37 37 H 1.08998 * 109.47381 * 301.84039 * 5 4 3 38 38 H 1.09006 * 109.46737 * 61.83877 * 5 4 3 39 39 H 1.08998 * 109.47462 * 181.83688 * 5 4 3 40 40 H 1.09004 * 109.46886 * 308.28361 * 6 3 2 41 41 H 1.08993 * 109.47661 * 188.28398 * 6 3 2 42 42 H 1.08998 * 109.63584 * 350.87224 * 10 9 7 43 43 H 1.08997 * 109.62968 * 111.26584 * 10 9 7 44 44 H 1.08996 * 109.47542 * 59.99925 * 13 11 10 45 45 H 1.09005 * 109.46938 * 180.02562 * 13 11 10 46 46 H 1.09005 * 109.47101 * 299.99861 * 13 11 10 47 47 H 1.08997 * 111.01623 * 158.01604 * 16 15 14 48 48 H 1.09003 * 111.04806 * 34.14630 * 16 15 14 49 49 H 1.09000 * 110.34920 * 204.76738 * 17 16 15 50 50 H 1.08994 * 110.35169 * 82.47463 * 17 16 15 51 51 H 0.96999 * 120.00405 * 180.02562 * 22 21 19 52 52 H 1.09008 * 109.90479 * 117.86456 * 27 18 17 53 53 H 1.08998 * 109.90488 * 239.11965 * 27 18 17 54 54 H 1.09004 * 109.63898 * 10.99385 * 28 9 7 55 55 H 1.09001 * 109.64099 * 250.37693 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6351 2.1265 1.3074 5 6 2.0132 3.6079 1.2463 6 6 3.5647 1.4445 -0.1257 7 6 3.9563 0.9579 -1.4972 8 8 3.1025 0.7455 -2.3319 9 7 5.2554 0.7588 -1.7962 10 6 6.3103 1.0087 -0.8010 11 6 7.3733 1.9126 -1.4357 12 1 6.9474 2.8979 -1.6249 13 6 8.5651 2.0449 -0.4853 14 8 7.8073 1.3343 -2.6704 15 6 6.7812 1.1867 -3.6418 16 6 7.3629 0.6163 -4.9547 17 6 7.8902 1.9009 -5.6439 18 7 6.9089 2.9464 -5.2989 19 6 6.6804 4.0932 -6.0115 20 1 5.7007 4.5478 -6.0033 21 6 7.7078 4.6715 -6.7442 22 7 7.4375 5.5994 -7.6376 23 14 9.4740 4.1325 -6.4623 24 1 9.7646 2.9354 -7.2916 25 1 10.3944 5.2339 -6.8433 26 1 9.6671 3.7999 -5.0281 27 6 6.2205 2.5554 -4.0580 28 6 5.6642 0.2842 -3.1292 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.6053 1.9815 -0.8418 35 1 0.5584 2.0319 1.4488 36 1 2.1541 1.6533 2.1409 37 1 3.0850 3.7025 1.0723 38 1 1.4692 4.0884 0.4330 39 1 1.7545 4.0882 2.1899 40 1 3.9924 0.7851 0.6296 41 1 3.9402 2.4571 0.0215 42 1 5.8818 1.5034 0.0706 43 1 6.7615 0.0631 -0.5004 44 1 8.9915 1.0594 -0.2979 45 1 9.3203 2.6881 -0.9371 46 1 8.2322 2.4818 0.4562 47 1 6.5850 0.1427 -5.5536 48 1 8.1762 -0.0807 -4.7524 49 1 7.9319 1.7617 -6.7242 50 1 8.8748 2.1622 -5.2561 51 1 8.1554 6.0033 -8.1499 52 1 6.4172 3.2902 -3.2772 53 1 5.1481 2.4784 -4.2370 54 1 4.8147 0.3297 -3.8107 55 1 6.0259 -0.7415 -3.0579 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131692240.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:20 Heat of formation + Delta-G solvation = -88.144674 kcal Electronic energy + Delta-G solvation = -32120.229886 eV Core-core repulsion = 28156.589960 eV Total energy + Delta-G solvation = -3963.639925 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.94390 -40.39579 -38.22608 -37.70772 -35.81846 -34.92578 -33.41551 -32.61620 -31.48200 -31.08035 -29.89826 -28.02190 -27.22280 -26.09247 -24.76540 -23.47943 -23.24916 -22.60213 -21.31288 -20.62519 -19.86880 -19.10574 -18.28976 -18.00678 -17.38926 -17.09915 -16.65954 -16.12773 -15.96396 -15.66089 -15.51761 -15.47946 -15.17325 -14.96697 -14.59002 -14.46430 -14.29144 -13.98326 -13.92278 -13.56403 -13.51734 -13.41747 -13.17978 -13.01776 -12.98569 -12.85399 -12.78127 -12.69411 -12.57907 -12.26641 -12.24798 -12.03926 -12.01337 -11.96220 -11.63017 -11.52642 -11.41738 -11.32537 -11.25252 -10.99523 -10.89203 -10.65015 -9.54538 -8.99823 -8.26611 -5.66090 1.26169 1.33647 1.45365 1.60666 1.86764 2.34485 2.53589 3.02196 3.12023 3.48473 3.52561 3.64665 3.71725 3.79347 3.86321 3.92236 4.03773 4.10497 4.19596 4.28882 4.36017 4.37781 4.42849 4.47761 4.51863 4.56000 4.61971 4.62261 4.64220 4.65652 4.72640 4.75383 4.82684 4.86695 4.90180 4.94249 4.97526 4.98037 5.08484 5.12063 5.12253 5.14702 5.25527 5.30662 5.31060 5.36806 5.47028 5.54137 5.59252 5.66666 6.02868 6.25543 6.34997 6.67472 7.14747 7.42065 8.02985 8.93875 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014309 B = 0.003253 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.308067 B = 8605.445885 C = 9027.290832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.073 4.073 4 C -0.113 4.113 5 C -0.159 4.159 6 C -0.132 4.132 7 C 0.508 3.492 8 O -0.578 6.578 9 N -0.619 5.619 10 C 0.084 3.916 11 C 0.056 3.944 12 H 0.043 0.957 13 C -0.134 4.134 14 O -0.369 6.369 15 C 0.107 3.893 16 C -0.105 4.105 17 C 0.103 3.897 18 N -0.624 5.624 19 C -0.245 4.245 20 H 0.044 0.956 21 C -0.028 4.028 22 N -0.958 5.958 23 Si 0.960 3.040 24 H -0.266 1.266 25 H -0.303 1.303 26 H -0.267 1.267 27 C 0.122 3.878 28 C 0.106 3.894 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.055 0.945 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.059 0.941 38 H 0.038 0.962 39 H 0.065 0.935 40 H 0.125 0.875 41 H 0.109 0.891 42 H 0.126 0.874 43 H 0.102 0.898 44 H 0.079 0.921 45 H 0.048 0.952 46 H 0.104 0.896 47 H 0.099 0.901 48 H 0.112 0.888 49 H 0.046 0.954 50 H 0.027 0.973 51 H 0.266 0.734 52 H 0.023 0.977 53 H 0.019 0.981 54 H 0.080 0.920 55 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.215 -14.660 25.475 29.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.092 4.092 4 C -0.150 4.150 5 C -0.217 4.217 6 C -0.171 4.171 7 C 0.299 3.701 8 O -0.458 6.458 9 N -0.352 5.352 10 C -0.038 4.038 11 C -0.002 4.002 12 H 0.061 0.939 13 C -0.191 4.191 14 O -0.289 6.289 15 C 0.066 3.934 16 C -0.143 4.143 17 C -0.021 4.021 18 N -0.351 5.351 19 C -0.374 4.374 20 H 0.062 0.938 21 C -0.223 4.223 22 N -0.603 5.603 23 Si 0.788 3.212 24 H -0.191 1.191 25 H -0.231 1.231 26 H -0.192 1.192 27 C -0.003 4.003 28 C -0.017 4.017 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.084 0.916 40 H 0.143 0.857 41 H 0.127 0.873 42 H 0.144 0.856 43 H 0.120 0.880 44 H 0.098 0.902 45 H 0.067 0.933 46 H 0.122 0.878 47 H 0.117 0.883 48 H 0.130 0.870 49 H 0.064 0.936 50 H 0.045 0.955 51 H 0.075 0.925 52 H 0.041 0.959 53 H 0.037 0.963 54 H 0.099 0.901 55 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.459 -14.649 24.862 29.199 hybrid contribution 0.346 0.837 -1.036 1.376 sum -4.113 -13.812 23.826 27.845 Atomic orbital electron populations 1.21779 0.95671 1.01633 1.01605 1.21557 0.96374 0.95987 1.01604 1.20977 0.92946 0.96810 0.98503 1.21589 1.01997 0.95197 0.96225 1.21887 1.01683 0.96376 1.01707 1.21924 0.98278 1.04272 0.92625 1.21481 0.81099 0.76206 0.91291 1.90683 1.50131 1.53120 1.51859 1.48371 1.06646 1.66610 1.13606 1.22698 0.87851 1.01694 0.91533 1.22800 0.97058 0.95584 0.84795 0.93856 1.21716 0.95709 1.03702 0.98022 1.87825 1.34305 1.82548 1.24176 1.22024 0.88503 0.93254 0.89632 1.22698 1.02340 0.96473 0.92787 1.22150 0.92715 0.88877 0.98314 1.44805 1.45175 1.20125 1.25023 1.18466 0.94863 1.00759 1.23313 0.93805 1.25951 1.02106 0.96507 0.97747 1.69904 1.33731 1.31038 1.25649 0.85720 0.80033 0.76679 0.78747 1.19146 1.23081 1.19201 1.21880 0.94896 0.95444 0.88097 1.21946 0.96725 0.97941 0.85094 0.91169 0.94481 0.92545 0.93816 0.90505 0.93409 0.91171 0.89881 0.92221 0.94254 0.91567 0.85708 0.87338 0.85648 0.87975 0.90173 0.93322 0.87770 0.88308 0.87000 0.93583 0.95533 0.92496 0.95931 0.96309 0.90141 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.68 71.98 0.70 -1.83 16 2 C -0.12 -2.12 5.22 30.60 0.16 -1.96 16 3 C -0.07 -1.32 1.48 -10.79 -0.02 -1.33 16 4 C -0.11 -1.41 5.28 30.60 0.16 -1.24 16 5 C -0.16 -2.14 9.74 71.98 0.70 -1.44 16 6 C -0.13 -2.14 3.47 29.85 0.10 -2.04 16 7 C 0.51 13.07 7.28 87.66 0.64 13.71 16 8 O -0.58 -20.16 13.93 -3.03 -0.04 -20.20 16 9 N -0.62 -14.73 2.95 -818.55 -2.41 -17.15 16 10 C 0.08 1.36 5.77 86.35 0.50 1.86 16 11 C 0.06 1.28 3.17 30.69 0.10 1.38 16 12 H 0.04 1.23 6.24 -2.39 -0.01 1.22 16 13 C -0.13 -2.19 9.57 71.98 0.69 -1.50 16 14 O -0.37 -11.32 9.90 -148.97 -1.47 -12.79 16 15 C 0.11 3.53 0.81 -10.23 -0.01 3.52 16 16 C -0.10 -3.41 6.21 31.80 0.20 -3.22 16 17 C 0.10 4.58 4.79 86.89 0.42 4.99 16 18 N -0.62 -32.40 3.09 -692.48 -2.14 -34.54 16 19 C -0.25 -15.16 10.58 84.03 0.89 -14.27 16 20 H 0.04 3.00 8.06 -2.91 -0.02 2.98 16 21 C -0.03 -1.72 5.48 84.86 0.46 -1.25 16 22 N -0.96 -62.59 13.97 21.65 0.30 -62.29 16 23 Si 0.96 49.10 24.38 68.60 1.67 50.77 16 24 H -0.27 -12.69 6.91 99.48 0.69 -12.00 16 25 H -0.30 -15.34 7.11 99.48 0.71 -14.63 16 26 H -0.27 -13.36 6.42 99.48 0.64 -12.72 16 27 C 0.12 5.33 6.34 86.47 0.55 5.87 16 28 C 0.11 2.96 5.20 86.06 0.45 3.40 16 29 H 0.07 0.94 6.44 -2.39 -0.02 0.92 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.04 1.05 6.40 -2.39 -0.02 1.04 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.05 1.20 7.74 -2.39 -0.02 1.18 16 35 H 0.07 0.86 6.31 -2.39 -0.02 0.85 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 0.75 6.36 -2.39 -0.02 0.73 16 38 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.12 1.17 7.69 -2.38 -0.02 1.16 16 41 H 0.11 1.55 6.03 -2.39 -0.01 1.53 16 42 H 0.13 1.18 6.08 -2.39 -0.01 1.17 16 43 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 46 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 47 H 0.10 2.96 8.01 -2.39 -0.02 2.94 16 48 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 49 H 0.05 2.12 7.41 -2.39 -0.02 2.10 16 50 H 0.03 1.23 5.04 -2.39 -0.01 1.22 16 51 H 0.27 16.33 8.31 -92.71 -0.77 15.56 16 52 H 0.02 1.03 6.03 -2.38 -0.01 1.02 16 53 H 0.02 0.89 7.61 -2.39 -0.02 0.87 16 54 H 0.08 2.65 6.82 -2.39 -0.02 2.63 16 55 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -81.10 402.99 3.36 -77.74 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.77 Total: 13.80 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 6.68 Total: 4.66 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -4.25 Total: -113.98 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -1.52 Total: -32.99 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 1.67 Total: 50.77 kcal Total: -81.10 3.36 -77.74 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131692240.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.400 kcal (2) G-P(sol) polarization free energy of solvation -81.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds