Wall clock time and date at job start Tue Mar 31 2020 21:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47487 * 2 1 4 4 C 1.53003 * 109.47009 * 304.82299 * 3 2 1 5 5 C 1.53000 * 109.47271 * 295.30878 * 4 3 2 6 6 C 1.53001 * 109.47375 * 64.82045 * 3 2 1 7 7 C 1.50702 * 109.46824 * 65.00126 * 6 3 2 8 8 O 1.21279 * 120.00029 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99733 * 179.97438 * 7 6 3 10 10 C 1.47166 * 121.07823 * 359.97438 * 9 7 6 11 11 C 1.53284 * 108.55174 * 128.75638 * 10 9 7 12 12 H 1.08997 * 109.51060 * 293.06087 * 11 10 9 13 13 C 1.53001 * 109.51324 * 172.95758 * 11 10 9 14 14 O 1.43125 * 109.22118 * 53.03133 * 11 10 9 15 15 C 1.41880 * 114.40259 * 299.12006 * 14 11 10 16 16 C 1.54370 * 110.72842 * 296.57930 * 15 14 11 17 17 C 1.54475 * 102.94943 * 276.13740 * 16 15 14 18 18 N 1.47090 * 107.28944 * 338.83646 * 17 16 15 19 19 C 1.36936 * 125.62991 * 178.91702 * 18 17 16 20 20 H 1.08003 * 120.00012 * 171.03554 * 19 18 17 21 21 C 1.38815 * 120.00018 * 351.03283 * 19 18 17 22 22 N 1.31616 * 119.99703 * 165.15697 * 21 19 18 23 23 Si 1.86803 * 119.99797 * 344.88413 * 21 19 18 24 24 H 1.48497 * 109.46646 * 185.55600 * 23 21 19 25 25 H 1.48498 * 109.47045 * 305.55573 * 23 21 19 26 26 H 1.48494 * 109.47229 * 65.55509 * 23 21 19 27 27 C 1.47579 * 108.73758 * 358.65084 * 18 17 16 28 28 C 1.47332 * 121.07894 * 179.97438 * 9 7 6 29 29 H 1.09001 * 109.46933 * 306.18653 * 1 2 3 30 30 H 1.09003 * 109.46909 * 66.18125 * 1 2 3 31 31 H 1.08991 * 109.47563 * 186.18432 * 1 2 3 32 32 H 1.09001 * 109.46921 * 239.99206 * 2 1 3 33 33 H 1.09003 * 109.46572 * 119.99618 * 2 1 3 34 34 H 1.08996 * 109.47655 * 184.82630 * 3 2 1 35 35 H 1.09006 * 109.46816 * 55.30448 * 4 3 2 36 36 H 1.09000 * 109.47340 * 175.30214 * 4 3 2 37 37 H 1.09004 * 109.46595 * 306.05456 * 5 4 3 38 38 H 1.08996 * 109.47104 * 66.04998 * 5 4 3 39 39 H 1.08998 * 109.47481 * 186.05963 * 5 4 3 40 40 H 1.09001 * 109.47256 * 305.00293 * 6 3 2 41 41 H 1.08995 * 109.47302 * 185.00453 * 6 3 2 42 42 H 1.09003 * 109.62265 * 248.47061 * 10 9 7 43 43 H 1.08995 * 109.62561 * 8.84652 * 10 9 7 44 44 H 1.08996 * 109.47271 * 60.00048 * 13 11 10 45 45 H 1.09000 * 109.47098 * 179.97438 * 13 11 10 46 46 H 1.09001 * 109.47217 * 299.99624 * 13 11 10 47 47 H 1.08999 * 110.73495 * 34.67664 * 16 15 14 48 48 H 1.08997 * 110.73106 * 157.80743 * 16 15 14 49 49 H 1.09004 * 109.98488 * 219.35912 * 17 16 15 50 50 H 1.08997 * 109.77875 * 98.19967 * 17 16 15 51 51 H 0.97001 * 120.00424 * 354.61317 * 22 21 19 52 52 H 1.09000 * 110.37259 * 142.37187 * 27 18 17 53 53 H 1.08999 * 110.37521 * 264.60751 * 27 18 17 54 54 H 1.08996 * 109.64101 * 109.44449 * 28 9 7 55 55 H 1.09008 * 109.81384 * 348.92130 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4335 2.1979 -1.1842 5 6 1.9360 1.5838 -2.4924 6 6 1.6315 2.1279 1.3054 7 6 2.3271 1.4591 2.4630 8 8 3.0761 0.5264 2.2635 9 7 2.1175 1.8982 3.7199 10 6 1.2149 3.0289 3.9889 11 6 0.2175 2.6092 5.0747 12 1 -0.4394 1.8319 4.6846 13 6 -0.6176 3.8197 5.4970 14 8 0.9362 2.1061 6.2055 15 6 1.7348 0.9657 5.9325 16 6 0.8547 -0.2273 5.5022 17 6 0.4052 -0.8303 6.8515 18 7 1.3643 -0.3812 7.8722 19 6 1.3076 -0.6814 9.2071 20 1 2.1345 -0.4266 9.8534 21 6 0.1872 -1.3129 9.7295 22 7 0.2386 -1.8618 10.9246 23 14 -1.3955 -1.3772 8.7393 24 1 -2.4715 -1.9818 9.5649 25 1 -1.7886 -0.0007 8.3445 26 1 -1.1844 -2.2002 7.5214 27 6 2.4014 0.4409 7.2191 28 6 2.7845 1.2616 4.8690 29 1 -0.3633 0.6068 0.8294 30 1 -0.3633 0.4150 -0.9402 31 1 -0.3634 -1.0216 0.1107 32 1 1.8933 -0.5140 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 3.1266 1.4437 -0.0865 35 1 0.3466 2.1256 -1.1429 36 1 1.7300 3.2457 -1.1371 37 1 3.0257 1.5582 -2.4865 38 1 1.5493 0.5694 -2.5897 39 1 1.5913 2.1864 -3.3327 40 1 0.5522 2.0486 1.4351 41 1 1.9167 3.1792 1.2684 42 1 1.7939 3.8852 4.3351 43 1 0.6784 3.2940 3.0779 44 1 -1.1610 4.2050 4.6343 45 1 -1.3268 3.5204 6.2687 46 1 0.0399 4.5959 5.8886 47 1 -0.0040 0.1151 4.9247 48 1 1.4375 -0.9509 4.9322 49 1 0.4089 -1.9188 6.7928 50 1 -0.5945 -0.4739 7.0999 51 1 1.0791 -1.8941 11.4079 52 1 2.6887 1.2717 7.8637 53 1 3.2717 -0.1687 6.9763 54 1 3.5376 1.9366 5.2755 55 1 3.2580 0.3320 4.5530 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131692241.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:24 Heat of formation + Delta-G solvation = -75.812068 kcal Electronic energy + Delta-G solvation = -32273.936338 eV Core-core repulsion = 28310.831195 eV Total energy + Delta-G solvation = -3963.105144 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.96658 -40.46213 -38.34069 -37.83102 -35.80557 -34.96238 -33.38563 -32.04126 -31.54610 -31.04039 -30.20733 -27.87429 -27.21438 -25.80430 -24.82857 -24.21125 -23.42964 -22.30396 -21.16236 -20.36219 -19.67452 -19.54115 -18.17269 -18.04509 -17.26228 -17.21402 -16.63112 -16.46994 -16.24070 -15.71387 -15.63426 -15.39155 -15.30412 -14.82957 -14.69592 -14.50640 -14.13442 -13.87592 -13.76075 -13.64225 -13.55810 -13.24412 -13.12223 -13.09201 -12.98329 -12.82766 -12.79514 -12.73463 -12.52557 -12.28049 -12.20920 -11.92920 -11.80103 -11.62721 -11.51032 -11.32858 -11.30936 -11.20834 -11.14514 -10.92234 -10.72437 -10.61787 -9.54006 -9.14105 -8.67616 -5.49040 1.35066 1.45196 1.62336 1.68159 1.84079 2.50826 2.54462 3.04825 3.17436 3.45382 3.48824 3.67405 3.72597 3.81654 3.83134 3.97360 3.98662 4.11665 4.15180 4.21026 4.32162 4.37581 4.46225 4.47709 4.55037 4.57660 4.60538 4.61579 4.64083 4.68260 4.68567 4.70378 4.76523 4.83105 4.85368 4.98369 4.98894 5.00147 5.02054 5.09644 5.13958 5.17061 5.26978 5.33795 5.37036 5.38650 5.41871 5.47757 5.54073 5.70248 6.06258 6.32881 6.37233 6.78068 7.15857 7.38886 8.04219 8.85532 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017244 B = 0.003141 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.368881 B = 8911.108190 C = 9183.231659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.068 4.068 4 C -0.116 4.116 5 C -0.154 4.154 6 C -0.133 4.133 7 C 0.512 3.488 8 O -0.574 6.574 9 N -0.615 5.615 10 C 0.083 3.917 11 C 0.055 3.945 12 H 0.062 0.938 13 C -0.138 4.138 14 O -0.374 6.374 15 C 0.108 3.892 16 C -0.137 4.137 17 C 0.109 3.891 18 N -0.628 5.628 19 C -0.306 4.306 20 H 0.050 0.950 21 C -0.079 4.079 22 N -0.964 5.964 23 Si 1.111 2.889 24 H -0.310 1.310 25 H -0.287 1.287 26 H -0.258 1.258 27 C 0.145 3.855 28 C 0.107 3.893 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.090 0.910 43 H 0.133 0.867 44 H 0.110 0.890 45 H 0.047 0.953 46 H 0.068 0.932 47 H 0.091 0.909 48 H 0.083 0.917 49 H 0.033 0.967 50 H 0.024 0.976 51 H 0.248 0.752 52 H 0.047 0.953 53 H 0.053 0.947 54 H 0.082 0.918 55 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.910 15.347 -29.386 33.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.087 4.087 4 C -0.153 4.153 5 C -0.212 4.212 6 C -0.172 4.172 7 C 0.303 3.697 8 O -0.454 6.454 9 N -0.348 5.348 10 C -0.039 4.039 11 C -0.002 4.002 12 H 0.080 0.920 13 C -0.195 4.195 14 O -0.294 6.294 15 C 0.066 3.934 16 C -0.174 4.174 17 C -0.015 4.015 18 N -0.355 5.355 19 C -0.435 4.435 20 H 0.068 0.932 21 C -0.272 4.272 22 N -0.609 5.609 23 Si 0.940 3.060 24 H -0.239 1.239 25 H -0.215 1.215 26 H -0.183 1.183 27 C 0.020 3.980 28 C -0.017 4.017 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.108 0.892 43 H 0.151 0.849 44 H 0.128 0.872 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.109 0.891 48 H 0.101 0.899 49 H 0.051 0.949 50 H 0.041 0.959 51 H 0.057 0.943 52 H 0.065 0.935 53 H 0.070 0.930 54 H 0.100 0.900 55 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.063 14.457 -29.197 32.645 hybrid contribution 2.121 -0.194 1.004 2.355 sum 0.058 14.263 -28.193 31.596 Atomic orbital electron populations 1.21881 0.95189 1.01377 1.02459 1.21619 0.96430 0.96817 1.01552 1.20914 0.99835 0.94705 0.93240 1.21611 1.01347 0.99398 0.92988 1.21796 1.00835 1.01038 0.97481 1.21934 1.02434 1.01760 0.91088 1.21434 0.81282 0.82955 0.84012 1.90667 1.39471 1.30534 1.84692 1.48332 1.46474 1.34271 1.05746 1.22693 0.92031 0.88322 1.00899 1.22862 0.93178 0.97403 0.86799 0.92034 1.21742 0.99192 0.95345 1.03270 1.87910 1.61914 1.44204 1.35339 1.22063 0.91085 0.85680 0.94531 1.22990 1.00969 0.97874 0.95608 1.22032 0.92949 0.97092 0.89458 1.44854 1.28582 1.58886 1.03207 1.20078 1.03218 1.36089 0.84109 0.93193 1.27028 1.04407 0.97232 0.98544 1.70984 1.28328 1.46611 1.14961 0.83336 0.72655 0.76479 0.73532 1.23939 1.21467 1.18329 1.21567 0.91460 0.93218 0.91777 1.21771 0.94262 1.00072 0.85587 0.92306 0.91041 0.93806 0.92420 0.93312 0.92522 0.90345 0.90783 0.93501 0.93000 0.91876 0.86567 0.86136 0.89204 0.84927 0.87156 0.93359 0.91317 0.89092 0.89850 0.94906 0.95879 0.94290 0.93490 0.92965 0.89993 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.11 71.98 0.66 -1.46 16 2 C -0.13 -2.25 5.12 30.59 0.16 -2.09 16 3 C -0.07 -0.97 1.82 -10.79 -0.02 -0.99 16 4 C -0.12 -1.06 5.08 30.60 0.16 -0.91 16 5 C -0.15 -1.58 9.51 71.98 0.68 -0.90 16 6 C -0.13 -1.61 3.42 29.85 0.10 -1.51 16 7 C 0.51 10.92 7.39 87.66 0.65 11.57 16 8 O -0.57 -17.09 13.48 -3.03 -0.04 -17.13 16 9 N -0.61 -12.83 2.95 -818.72 -2.42 -15.25 16 10 C 0.08 1.20 5.81 86.35 0.50 1.70 16 11 C 0.06 1.16 3.20 30.69 0.10 1.26 16 12 H 0.06 1.32 6.24 -2.39 -0.01 1.31 16 13 C -0.14 -2.26 9.57 71.98 0.69 -1.57 16 14 O -0.37 -12.10 9.92 -148.95 -1.48 -13.57 16 15 C 0.11 3.54 0.84 -10.17 -0.01 3.53 16 16 C -0.14 -4.64 5.87 31.56 0.19 -4.45 16 17 C 0.11 4.87 4.64 86.77 0.40 5.28 16 18 N -0.63 -32.10 3.34 -692.69 -2.32 -34.42 16 19 C -0.31 -18.62 10.56 84.03 0.89 -17.74 16 20 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 21 C -0.08 -4.96 5.50 84.86 0.47 -4.49 16 22 N -0.96 -64.23 13.70 21.65 0.30 -63.93 16 23 Si 1.11 56.80 24.53 68.60 1.68 58.48 16 24 H -0.31 -16.10 7.11 99.48 0.71 -15.39 16 25 H -0.29 -13.99 6.81 99.48 0.68 -13.31 16 26 H -0.26 -11.79 5.43 99.48 0.54 -11.25 16 27 C 0.15 5.99 6.41 86.55 0.56 6.55 16 28 C 0.11 2.87 5.29 86.00 0.45 3.32 16 29 H 0.06 0.73 6.20 -2.39 -0.01 0.72 16 30 H 0.07 0.76 6.62 -2.39 -0.02 0.74 16 31 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 1.02 6.94 -2.39 -0.02 1.00 16 33 H 0.05 1.21 5.88 -2.39 -0.01 1.19 16 34 H 0.06 1.05 7.95 -2.39 -0.02 1.03 16 35 H 0.08 0.58 6.22 -2.38 -0.01 0.56 16 36 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.05 0.58 6.98 -2.39 -0.02 0.56 16 39 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.12 0.98 5.76 -2.39 -0.01 0.96 16 41 H 0.12 0.82 8.00 -2.39 -0.02 0.80 16 42 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.13 0.85 6.05 -2.39 -0.01 0.84 16 44 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.09 2.69 6.09 -2.39 -0.01 2.67 16 48 H 0.08 2.73 7.82 -2.39 -0.02 2.71 16 49 H 0.03 1.54 6.76 -2.39 -0.02 1.53 16 50 H 0.02 1.10 3.73 -2.39 -0.01 1.09 16 51 H 0.25 16.54 8.73 -92.71 -0.81 15.73 16 52 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 53 H 0.05 2.05 8.00 -2.39 -0.02 2.03 16 54 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 55 H 0.09 2.68 6.87 -2.38 -0.02 2.67 16 Total: -1.00 -79.97 396.72 2.97 -76.99 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.63 Total: 11.72 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 6.62 Total: -2.89 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -4.43 Total: -113.60 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -1.52 Total: -30.70 kcal Atomic # 14 Polarization: 56.80 SS G_CDS: 1.68 Total: 58.48 kcal Total: -79.97 2.97 -76.99 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131692241.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.182 kcal (2) G-P(sol) polarization free energy of solvation -79.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds