Wall clock time and date at job start Tue Mar 31 2020 21:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47540 * 2 1 4 4 C 1.53004 * 109.47244 * 64.99579 * 3 2 1 5 5 C 1.53004 * 109.46840 * 185.30618 * 4 3 2 6 6 C 1.53003 * 109.47506 * 185.00075 * 3 2 1 7 7 C 1.50693 * 109.47053 * 67.19113 * 6 3 2 8 8 O 1.21285 * 120.00227 * 356.38825 * 7 6 3 9 9 N 1.34777 * 119.99889 * 176.39357 * 7 6 3 10 10 C 1.47165 * 121.07714 * 0.02562 * 9 7 6 11 11 C 1.53286 * 108.56070 * 128.73483 * 10 9 7 12 12 H 1.09001 * 109.54898 * 293.06688 * 11 10 9 13 13 C 1.53002 * 109.51383 * 172.93911 * 11 10 9 14 14 O 1.43120 * 109.21975 * 53.01315 * 11 10 9 15 15 C 1.41883 * 114.38545 * 299.11303 * 14 11 10 16 16 C 1.54358 * 110.74907 * 183.29862 * 15 14 11 17 17 C 1.54465 * 102.87916 * 83.66808 * 16 15 14 18 18 N 1.47089 * 107.29185 * 21.48920 * 17 16 15 19 19 C 1.36937 * 125.62571 * 181.02213 * 18 17 16 20 20 H 1.07997 * 119.99783 * 179.97438 * 19 18 17 21 21 C 1.38814 * 120.00246 * 359.97438 * 19 18 17 22 22 N 1.31619 * 120.00196 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00030 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47524 * 89.99742 * 23 21 19 25 25 H 1.48498 * 109.46843 * 209.99780 * 23 21 19 26 26 H 1.48495 * 109.46891 * 329.99748 * 23 21 19 27 27 C 1.47559 * 108.74090 * 0.99863 * 18 17 16 28 28 C 1.47331 * 121.08032 * 180.02562 * 9 7 6 29 29 H 1.09006 * 109.47256 * 60.00211 * 1 2 3 30 30 H 1.08996 * 109.47401 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47301 * 300.00685 * 1 2 3 32 32 H 1.08996 * 109.47301 * 239.99315 * 2 1 3 33 33 H 1.09008 * 109.46516 * 119.99806 * 2 1 3 34 34 H 1.09002 * 109.46979 * 305.00012 * 3 2 1 35 35 H 1.08996 * 109.46878 * 305.30139 * 4 3 2 36 36 H 1.08994 * 109.46787 * 65.30893 * 4 3 2 37 37 H 1.08996 * 109.47354 * 294.73614 * 5 4 3 38 38 H 1.08995 * 109.47638 * 54.74684 * 5 4 3 39 39 H 1.09007 * 109.46744 * 174.74397 * 5 4 3 40 40 H 1.08998 * 109.46680 * 307.19018 * 6 3 2 41 41 H 1.09002 * 109.46986 * 187.19610 * 6 3 2 42 42 H 1.09002 * 109.62185 * 9.01289 * 10 9 7 43 43 H 1.09002 * 109.62446 * 248.45336 * 10 9 7 44 44 H 1.08994 * 109.47156 * 300.25669 * 13 11 10 45 45 H 1.08997 * 109.47078 * 180.25530 * 13 11 10 46 46 H 1.09002 * 109.46721 * 60.25557 * 13 11 10 47 47 H 1.09001 * 110.73374 * 202.01423 * 16 15 14 48 48 H 1.08996 * 110.73412 * 325.31940 * 16 15 14 49 49 H 1.09001 * 109.87432 * 262.06899 * 17 16 15 50 50 H 1.09000 * 110.00391 * 140.98367 * 17 16 15 51 51 H 0.96996 * 120.00516 * 179.97438 * 22 21 19 52 52 H 1.09002 * 110.37782 * 217.85623 * 27 18 17 53 53 H 1.09007 * 110.37762 * 95.51385 * 27 18 17 54 54 H 1.08998 * 109.67749 * 109.45838 * 28 9 7 55 55 H 1.08996 * 109.67012 * 348.91854 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6352 2.1265 1.3073 5 6 2.0287 3.6041 1.2527 6 6 3.5649 1.4442 -0.1257 7 6 3.9572 0.9323 -1.4877 8 8 3.1055 0.5374 -2.2556 9 7 5.2545 0.9133 -1.8524 10 6 6.3074 1.3861 -0.9394 11 6 7.3898 0.3051 -0.8412 12 1 6.9823 -0.5749 -0.3435 13 6 8.5771 0.8420 -0.0393 14 8 7.8233 -0.0484 -2.1586 15 6 6.8020 -0.5781 -2.9889 16 6 7.3760 -1.0058 -4.3565 17 6 7.9249 -2.4213 -4.0719 18 7 7.2326 -2.9266 -2.8766 19 6 7.4486 -4.1419 -2.2837 20 1 6.8867 -4.4214 -1.4047 21 6 8.3897 -5.0146 -2.8123 22 7 9.0742 -4.6743 -3.8838 23 14 8.6839 -6.6728 -2.0039 24 1 7.7754 -7.6835 -2.6025 25 1 10.0940 -7.0853 -2.2195 26 1 8.4161 -6.5676 -0.5471 27 6 6.2673 -1.9075 -2.4215 28 6 5.6647 0.4184 -3.1782 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8901 34 1 1.6054 1.9814 -0.8418 35 1 0.5570 2.0424 1.4426 36 1 2.1449 1.6455 2.1420 37 1 3.1145 3.6898 1.2114 38 1 1.5938 4.0634 0.3650 39 1 1.6579 4.1119 2.1432 40 1 3.9934 0.7999 0.6419 41 1 3.9388 2.4601 0.0023 42 1 5.8815 1.5683 0.0473 43 1 6.7433 2.3063 -1.3285 44 1 8.9827 1.7230 -0.5366 45 1 9.3481 0.0745 0.0261 46 1 8.2460 1.1111 0.9638 47 1 6.5900 -1.0413 -5.1109 48 1 8.1783 -0.3356 -4.6649 49 1 8.9978 -2.3722 -3.8858 50 1 7.7255 -3.0761 -4.9203 51 1 9.7321 -5.2839 -4.2531 52 1 6.2389 -1.8712 -1.3325 53 1 5.2754 -2.1191 -2.8210 54 1 6.0054 1.2523 -3.7919 55 1 4.8218 -0.0742 -3.6628 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131692243.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:27 Heat of formation + Delta-G solvation = -86.102839 kcal Electronic energy + Delta-G solvation = -32102.311669 eV Core-core repulsion = 28138.760284 eV Total energy + Delta-G solvation = -3963.551385 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.86517 -40.32165 -38.03390 -37.64331 -35.76547 -34.86737 -32.96940 -32.59697 -31.38379 -30.95195 -29.58758 -27.76725 -27.18538 -26.18779 -24.83994 -23.45704 -23.16651 -22.00806 -21.30627 -20.60188 -19.91955 -18.99435 -18.24967 -17.90057 -17.13889 -16.82897 -16.57635 -16.05168 -15.78302 -15.59988 -15.48708 -15.31165 -15.10353 -14.95825 -14.43825 -14.39566 -14.02741 -13.92860 -13.71899 -13.58141 -13.38579 -13.12034 -13.07573 -12.96432 -12.84728 -12.82003 -12.68310 -12.66015 -12.24438 -12.22717 -12.07410 -12.04774 -12.01266 -11.96124 -11.72542 -11.56490 -11.43142 -11.28906 -11.22429 -10.87980 -10.72541 -10.58853 -9.49222 -8.93675 -7.88184 -5.24220 1.41623 1.44533 1.53003 1.62485 1.89067 2.45495 2.63623 3.29401 3.41897 3.54907 3.63036 3.75190 3.82378 3.89200 3.91004 4.00243 4.08899 4.14906 4.22365 4.38705 4.40506 4.43719 4.49624 4.52983 4.59197 4.61735 4.63666 4.67043 4.67371 4.69095 4.78244 4.83555 4.91393 4.93754 4.96278 4.99810 5.03495 5.11780 5.13479 5.17755 5.27507 5.31773 5.33303 5.37170 5.39500 5.49782 5.56874 5.59982 5.60846 5.72356 6.14740 6.36828 6.39626 7.05927 7.16711 7.71631 8.36960 9.22239 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012967 B = 0.003257 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.857974 B = 8593.868983 C = 9381.560901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C -0.066 4.066 4 C -0.116 4.116 5 C -0.155 4.155 6 C -0.132 4.132 7 C 0.509 3.491 8 O -0.575 6.575 9 N -0.618 5.618 10 C 0.085 3.915 11 C 0.059 3.941 12 H 0.042 0.958 13 C -0.134 4.134 14 O -0.370 6.370 15 C 0.108 3.892 16 C -0.119 4.119 17 C 0.192 3.808 18 N -0.620 5.620 19 C -0.246 4.246 20 H 0.075 0.925 21 C -0.063 4.063 22 N -0.948 5.948 23 Si 0.980 3.020 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.269 1.269 27 C 0.123 3.877 28 C 0.107 3.893 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.062 0.938 40 H 0.108 0.892 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.098 0.902 44 H 0.076 0.924 45 H 0.044 0.956 46 H 0.105 0.895 47 H 0.091 0.909 48 H 0.092 0.908 49 H 0.012 0.988 50 H 0.009 0.991 51 H 0.248 0.752 52 H 0.035 0.965 53 H 0.013 0.987 54 H 0.093 0.907 55 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.492 20.780 12.012 26.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C -0.085 4.085 4 C -0.154 4.154 5 C -0.212 4.212 6 C -0.171 4.171 7 C 0.300 3.700 8 O -0.455 6.455 9 N -0.351 5.351 10 C -0.037 4.037 11 C 0.001 3.999 12 H 0.060 0.940 13 C -0.191 4.191 14 O -0.289 6.289 15 C 0.067 3.933 16 C -0.158 4.158 17 C 0.067 3.933 18 N -0.346 5.346 19 C -0.375 4.375 20 H 0.093 0.907 21 C -0.256 4.256 22 N -0.597 5.597 23 Si 0.808 3.192 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.194 1.194 27 C -0.002 4.002 28 C -0.017 4.017 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.126 0.874 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.117 0.883 44 H 0.095 0.905 45 H 0.064 0.936 46 H 0.124 0.876 47 H 0.110 0.890 48 H 0.110 0.890 49 H 0.030 0.970 50 H 0.027 0.973 51 H 0.057 0.943 52 H 0.053 0.947 53 H 0.030 0.970 54 H 0.111 0.889 55 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.636 20.429 11.538 25.760 hybrid contribution 0.223 -1.753 -0.220 1.781 sum -10.412 18.676 11.318 24.193 Atomic orbital electron populations 1.21749 0.95357 1.01346 1.01882 1.21663 0.96672 0.96944 1.01314 1.20936 0.92763 0.96006 0.98807 1.21605 1.01830 0.95950 0.95971 1.21849 1.02068 0.95451 1.01829 1.21918 0.98327 1.04466 0.92385 1.21472 0.80975 0.77212 0.90385 1.90661 1.50004 1.49248 1.55573 1.48379 1.06871 1.63619 1.16205 1.22686 0.87833 0.97337 0.95880 1.22747 0.96761 0.96422 0.83941 0.94010 1.21700 0.95894 1.01438 1.00073 1.87817 1.34881 1.82038 1.24150 1.22054 0.88262 0.91094 0.91908 1.22726 1.01580 0.97042 0.94413 1.20876 0.94315 0.90127 0.88002 1.44712 1.43475 1.15401 1.30999 1.19372 1.17666 0.92114 1.08381 0.90695 1.25660 0.98795 1.02383 0.98767 1.70186 1.28074 1.36946 1.24482 0.85063 0.76747 0.79222 0.78196 1.21226 1.21640 1.19391 1.21997 0.91824 0.89354 0.97063 1.21888 0.96671 0.97494 0.85654 0.93631 0.93374 0.91058 0.93596 0.92072 0.92167 0.91279 0.90937 0.91668 0.93309 0.91934 0.87363 0.85889 0.85489 0.88347 0.90486 0.93648 0.87639 0.89030 0.88962 0.96977 0.97262 0.94264 0.94719 0.96979 0.88872 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.67 71.98 0.70 -2.09 16 2 C -0.13 -2.80 5.20 30.59 0.16 -2.64 16 3 C -0.07 -1.17 1.49 -10.79 -0.02 -1.18 16 4 C -0.12 -1.39 5.27 30.60 0.16 -1.23 16 5 C -0.15 -1.49 9.55 71.98 0.69 -0.81 16 6 C -0.13 -2.16 3.44 29.85 0.10 -2.05 16 7 C 0.51 13.17 7.45 87.65 0.65 13.82 16 8 O -0.58 -19.67 13.49 -3.05 -0.04 -19.71 16 9 N -0.62 -15.53 2.96 -818.62 -2.42 -17.95 16 10 C 0.08 1.55 5.78 86.35 0.50 2.05 16 11 C 0.06 1.55 3.20 30.69 0.10 1.65 16 12 H 0.04 1.30 6.26 -2.39 -0.01 1.29 16 13 C -0.13 -2.65 9.57 71.98 0.69 -1.96 16 14 O -0.37 -13.13 9.92 -148.95 -1.48 -14.61 16 15 C 0.11 3.96 0.83 -10.16 -0.01 3.95 16 16 C -0.12 -4.63 6.12 31.55 0.19 -4.44 16 17 C 0.19 10.07 5.39 86.77 0.47 10.54 16 18 N -0.62 -34.14 3.40 -692.74 -2.36 -36.49 16 19 C -0.25 -14.64 10.28 84.03 0.86 -13.77 16 20 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 21 C -0.06 -3.73 5.49 84.86 0.47 -3.26 16 22 N -0.95 -59.02 10.31 21.65 0.22 -58.80 16 23 Si 0.98 47.34 29.55 68.60 2.03 49.36 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 26 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 27 C 0.12 5.57 6.18 86.56 0.54 6.10 16 28 C 0.11 3.19 5.30 86.02 0.46 3.65 16 29 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.06 6.46 -2.39 -0.02 1.04 16 32 H 0.05 1.36 5.95 -2.39 -0.01 1.34 16 33 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.06 1.28 7.93 -2.39 -0.02 1.26 16 35 H 0.07 0.82 6.33 -2.39 -0.02 0.81 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.50 6.68 -2.39 -0.02 0.48 16 38 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 40 H 0.11 1.50 7.83 -2.39 -0.02 1.48 16 41 H 0.12 1.28 6.08 -2.39 -0.01 1.27 16 42 H 0.13 1.39 6.07 -2.39 -0.01 1.38 16 43 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 45 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.09 3.19 8.00 -2.39 -0.02 3.17 16 48 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 49 H 0.01 0.71 7.39 -2.39 -0.02 0.69 16 50 H 0.01 0.53 7.49 -2.39 -0.02 0.52 16 51 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 52 H 0.03 1.57 6.10 -2.39 -0.01 1.55 16 53 H 0.01 0.59 7.82 -2.38 -0.02 0.57 16 54 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 55 H 0.08 2.83 6.85 -2.39 -0.02 2.81 16 Total: -1.00 -77.42 408.24 3.51 -73.92 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.85 Total: 15.95 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 6.70 Total: 8.33 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -4.55 Total: -113.24 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -1.52 Total: -34.32 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.36 kcal Total: -77.42 3.51 -73.92 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131692243.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.186 kcal (2) G-P(sol) polarization free energy of solvation -77.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds