Wall clock time and date at job start Tue Mar 31 2020 21:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47417 * 2 1 4 4 C 1.52995 * 109.47417 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47173 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47238 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47191 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00021 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00308 * 179.97438 * 7 6 5 10 10 C 1.47171 * 121.07173 * 0.02562 * 9 7 6 11 11 C 1.53286 * 108.52899 * 231.28058 * 10 9 7 12 12 H 1.08994 * 109.55548 * 66.88952 * 11 10 9 13 13 C 1.53001 * 109.50822 * 187.01300 * 11 10 9 14 14 O 1.43112 * 109.22265 * 306.93258 * 11 10 9 15 15 C 1.41877 * 114.42268 * 60.88016 * 14 11 10 16 16 C 1.54364 * 110.74649 * 63.52461 * 15 14 11 17 17 C 1.54470 * 102.87882 * 83.65673 * 16 15 14 18 18 N 1.47083 * 107.29361 * 21.49669 * 17 16 15 19 19 C 1.36933 * 125.62991 * 180.97659 * 18 17 16 20 20 H 1.08000 * 120.00460 * 173.98250 * 19 18 17 21 21 C 1.38814 * 120.00039 * 353.97929 * 19 18 17 22 22 N 1.31619 * 119.99917 * 6.85739 * 21 19 18 23 23 Si 1.86800 * 120.00260 * 186.85905 * 21 19 18 24 24 H 1.48501 * 109.47101 * 94.98478 * 23 21 19 25 25 H 1.48500 * 109.47334 * 214.98807 * 23 21 19 26 26 H 1.48502 * 109.46874 * 334.98546 * 23 21 19 27 27 C 1.47566 * 108.73985 * 0.99802 * 18 17 16 28 28 C 1.47321 * 121.08074 * 179.97438 * 9 7 6 29 29 H 1.08999 * 109.47166 * 299.99390 * 1 2 3 30 30 H 1.08990 * 109.47308 * 59.99772 * 1 2 3 31 31 H 1.09007 * 109.46992 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47210 * 240.00136 * 2 1 3 33 33 H 1.09003 * 109.47562 * 120.00390 * 2 1 3 34 34 H 1.09009 * 109.46944 * 60.00365 * 3 2 1 35 35 H 1.08996 * 109.47425 * 300.00639 * 3 2 1 36 36 H 1.08999 * 109.47166 * 60.00610 * 4 3 2 37 37 H 1.08998 * 109.47526 * 299.99930 * 4 3 2 38 38 H 1.08997 * 109.47747 * 59.99816 * 5 4 3 39 39 H 1.09007 * 109.46901 * 299.99851 * 5 4 3 40 40 H 1.08999 * 109.47349 * 59.99909 * 6 5 4 41 41 H 1.08996 * 109.47097 * 300.00026 * 6 5 4 42 42 H 1.09000 * 109.62568 * 111.56771 * 10 9 7 43 43 H 1.08996 * 109.62944 * 350.99136 * 10 9 7 44 44 H 1.09005 * 109.46879 * 179.74292 * 13 11 10 45 45 H 1.09001 * 109.47377 * 59.75085 * 13 11 10 46 46 H 1.08996 * 109.47649 * 299.74588 * 13 11 10 47 47 H 1.08998 * 110.73662 * 202.00544 * 16 15 14 48 48 H 1.09004 * 110.73244 * 325.31454 * 16 15 14 49 49 H 1.09004 * 109.87792 * 262.07270 * 17 16 15 50 50 H 1.08997 * 110.00384 * 140.99515 * 17 16 15 51 51 H 0.97008 * 120.00221 * 179.97438 * 22 21 19 52 52 H 1.08993 * 110.37704 * 217.85169 * 27 18 17 53 53 H 1.08996 * 110.37756 * 95.50216 * 27 18 17 54 54 H 1.09005 * 109.63438 * 11.18679 * 28 9 7 55 55 H 1.08994 * 109.81802 * 250.66274 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8850 0.0013 6 6 5.6100 2.8850 0.0013 7 6 6.1123 4.3058 0.0013 8 8 5.3242 5.2276 0.0018 9 7 7.4374 4.5521 0.0018 10 6 8.4145 3.4517 0.0018 11 6 9.4174 3.6907 1.1362 12 1 8.9108 3.5971 2.0967 13 6 10.5429 2.6580 1.0492 14 8 9.9655 5.0068 1.0110 15 6 9.0089 6.0511 1.0955 16 6 8.3415 6.0701 2.4873 17 6 9.3464 6.8759 3.3400 18 7 10.1599 7.6789 2.4144 19 6 11.1802 8.5191 2.7725 20 1 11.7827 8.9922 2.0112 21 6 11.4402 8.7628 4.1141 22 7 10.7981 8.0858 5.0424 23 14 12.7013 10.0516 4.6021 24 1 12.0142 11.3414 4.8661 25 1 13.4121 9.6092 5.8286 26 1 13.6801 10.2287 3.4995 27 6 9.6948 7.4301 1.0363 28 6 7.9545 5.9316 0.0013 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 1.9564 -0.8899 36 1 3.9337 0.9286 -0.8892 37 1 3.9330 0.9288 0.8908 38 1 3.7163 3.3987 0.8912 39 1 3.7170 3.3991 -0.8888 40 1 5.9734 2.3716 -0.8889 41 1 5.9733 2.3708 0.8910 42 1 8.9401 3.4288 -0.9528 43 1 7.8994 2.5046 0.1621 44 1 11.2580 2.8314 1.8534 45 1 11.0479 2.7510 0.0878 46 1 10.1248 1.6559 1.1446 47 1 7.3773 6.5766 2.4461 48 1 8.2306 5.0578 2.8759 49 1 9.9866 6.1948 3.9007 50 1 8.8111 7.5312 4.0271 51 1 10.9800 8.2558 5.9800 52 1 10.5404 7.4041 0.3492 53 1 8.9812 8.1961 0.7324 54 1 7.1398 6.6282 0.1996 55 1 8.4026 6.1579 -0.9662 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131698284.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:43 Heat of formation + Delta-G solvation = -94.344629 kcal Electronic energy + Delta-G solvation = -30810.141266 eV Core-core repulsion = 26846.232491 eV Total energy + Delta-G solvation = -3963.908776 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.83269 -40.12601 -37.96716 -37.24585 -35.78572 -34.85093 -34.22097 -32.92214 -31.21466 -30.60593 -29.66543 -27.69105 -27.19322 -26.03945 -24.75949 -23.13486 -22.24111 -22.05394 -21.82131 -20.85205 -19.92360 -18.97861 -18.14345 -17.90832 -17.17293 -16.92355 -16.76725 -16.40626 -15.98501 -15.67782 -15.49706 -15.18533 -15.06883 -14.83850 -14.60965 -14.20159 -14.06297 -13.83561 -13.77314 -13.57576 -13.40986 -13.32198 -13.12042 -13.00329 -12.86955 -12.81786 -12.77057 -12.29936 -12.28716 -12.23078 -12.09978 -12.01307 -11.87348 -11.76821 -11.72040 -11.58594 -11.51237 -11.42217 -11.30395 -10.92106 -10.73465 -10.70132 -9.52437 -8.92551 -7.87486 -5.22384 1.44340 1.47190 1.56016 1.60049 1.86015 2.47869 2.62542 3.31329 3.39705 3.52898 3.58850 3.81790 3.84086 3.89991 3.94461 4.02556 4.06790 4.19666 4.23360 4.24000 4.35070 4.37689 4.42064 4.47694 4.57305 4.60192 4.65348 4.71807 4.74041 4.75335 4.79198 4.84521 4.86160 4.91215 4.93930 5.00033 5.05156 5.11972 5.13026 5.16353 5.25497 5.26473 5.31749 5.36213 5.42041 5.44413 5.52074 5.55860 5.57870 5.67602 6.15318 6.35556 6.40697 7.06603 7.12782 7.73172 8.38941 9.24040 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019879 B = 0.002203 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.193690 B =12706.277425 C =13153.832905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.123 4.123 4 C -0.112 4.112 5 C -0.102 4.102 6 C -0.131 4.131 7 C 0.508 3.492 8 O -0.586 6.586 9 N -0.614 5.614 10 C 0.083 3.917 11 C 0.057 3.943 12 H 0.052 0.948 13 C -0.135 4.135 14 O -0.372 6.372 15 C 0.111 3.889 16 C -0.148 4.148 17 C 0.197 3.803 18 N -0.620 5.620 19 C -0.241 4.241 20 H 0.085 0.915 21 C -0.068 4.068 22 N -0.952 5.952 23 Si 0.982 3.018 24 H -0.287 1.287 25 H -0.294 1.294 26 H -0.265 1.265 27 C 0.145 3.855 28 C 0.105 3.895 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.125 0.875 41 H 0.115 0.885 42 H 0.094 0.906 43 H 0.133 0.867 44 H 0.046 0.954 45 H 0.071 0.929 46 H 0.108 0.892 47 H 0.065 0.935 48 H 0.074 0.926 49 H 0.005 0.995 50 H 0.007 0.993 51 H 0.246 0.754 52 H 0.052 0.948 53 H 0.046 0.954 54 H 0.085 0.915 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.045 -21.247 -14.071 28.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C -0.161 4.161 4 C -0.149 4.149 5 C -0.140 4.140 6 C -0.170 4.170 7 C 0.299 3.701 8 O -0.467 6.467 9 N -0.347 5.347 10 C -0.039 4.039 11 C -0.001 4.001 12 H 0.070 0.930 13 C -0.193 4.193 14 O -0.292 6.292 15 C 0.070 3.930 16 C -0.187 4.187 17 C 0.072 3.928 18 N -0.346 5.346 19 C -0.370 4.370 20 H 0.103 0.897 21 C -0.261 4.261 22 N -0.601 5.601 23 Si 0.809 3.191 24 H -0.214 1.214 25 H -0.221 1.221 26 H -0.190 1.190 27 C 0.020 3.980 28 C -0.018 4.018 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.143 0.857 41 H 0.133 0.867 42 H 0.112 0.888 43 H 0.151 0.849 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.127 0.873 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.023 0.977 50 H 0.025 0.975 51 H 0.056 0.944 52 H 0.071 0.929 53 H 0.064 0.936 54 H 0.103 0.897 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.167 -20.667 -13.937 28.191 hybrid contribution 0.471 1.292 1.048 1.729 sum -12.696 -19.375 -12.890 26.509 Atomic orbital electron populations 1.21802 0.96058 1.01850 1.01626 1.21526 0.95801 0.96350 1.02374 1.21625 0.95721 0.97139 1.01593 1.21565 0.95185 0.94956 1.03187 1.21315 0.93119 0.97720 1.01874 1.21796 0.97547 0.91031 1.06646 1.21585 0.80879 0.93277 0.74363 1.90683 1.55683 1.48441 1.51859 1.48336 1.06176 1.07028 1.73184 1.22721 0.90415 0.90715 1.00013 1.22810 0.96148 0.83431 0.97726 0.92981 1.21717 0.97001 0.97502 1.03037 1.87871 1.33756 1.14279 1.93246 1.22056 0.88824 0.88832 0.93325 1.23148 0.98280 1.00435 0.96827 1.20773 0.90184 0.91300 0.90530 1.44702 1.37786 1.50505 1.01654 1.19483 1.07256 1.18252 0.91978 0.89745 1.25719 1.02588 1.02084 0.95705 1.70216 1.46698 1.43841 0.99382 0.85012 0.78196 0.78395 0.77452 1.21410 1.22107 1.18986 1.21535 0.97090 0.91908 0.87511 1.21832 0.96397 0.84829 0.98782 0.93163 0.92897 0.92218 0.91428 0.91770 0.92944 0.92491 0.90405 0.90974 0.93468 0.92761 0.85745 0.86678 0.88761 0.84941 0.93513 0.90983 0.87340 0.91644 0.90712 0.97712 0.97477 0.94437 0.92924 0.93603 0.89707 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.91 71.98 0.71 -0.91 16 2 C -0.12 -1.26 5.93 30.59 0.18 -1.08 16 3 C -0.12 -1.53 5.21 30.59 0.16 -1.37 16 4 C -0.11 -1.23 5.21 30.59 0.16 -1.07 16 5 C -0.10 -1.68 4.50 30.60 0.14 -1.54 16 6 C -0.13 -1.87 4.07 29.85 0.12 -1.74 16 7 C 0.51 12.58 7.71 87.66 0.68 13.26 16 8 O -0.59 -20.02 15.47 -3.04 -0.05 -20.07 16 9 N -0.61 -14.80 2.95 -818.56 -2.42 -17.22 16 10 C 0.08 1.41 5.81 86.35 0.50 1.91 16 11 C 0.06 1.37 3.20 30.69 0.10 1.47 16 12 H 0.05 1.39 6.24 -2.39 -0.01 1.37 16 13 C -0.14 -2.50 9.57 71.98 0.69 -1.81 16 14 O -0.37 -13.13 9.92 -148.95 -1.48 -14.60 16 15 C 0.11 4.04 0.84 -10.14 -0.01 4.03 16 16 C -0.15 -6.06 5.88 31.56 0.19 -5.87 16 17 C 0.20 10.50 5.39 86.77 0.47 10.97 16 18 N -0.62 -33.72 3.40 -692.73 -2.36 -36.08 16 19 C -0.24 -14.08 10.26 84.03 0.86 -13.22 16 20 H 0.08 4.69 7.84 -2.91 -0.02 4.67 16 21 C -0.07 -4.04 5.48 84.86 0.47 -3.57 16 22 N -0.95 -59.66 10.35 21.65 0.22 -59.44 16 23 Si 0.98 47.24 29.56 68.60 2.03 49.27 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 25 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 27 C 0.15 6.27 6.42 86.56 0.56 6.82 16 28 C 0.11 3.16 5.30 86.03 0.46 3.62 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.07 0.60 8.14 -2.38 -0.02 0.59 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 39 H 0.05 1.05 8.10 -2.38 -0.02 1.03 16 40 H 0.12 1.02 8.01 -2.39 -0.02 1.00 16 41 H 0.12 1.19 7.67 -2.39 -0.02 1.17 16 42 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.13 1.16 6.05 -2.39 -0.01 1.14 16 44 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 45 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.06 2.65 7.82 -2.39 -0.02 2.63 16 48 H 0.07 2.81 6.09 -2.39 -0.01 2.80 16 49 H 0.00 0.28 7.55 -2.39 -0.02 0.26 16 50 H 0.01 0.42 7.36 -2.39 -0.02 0.40 16 51 H 0.25 14.95 8.31 -92.70 -0.77 14.17 16 52 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 53 H 0.05 1.90 7.99 -2.39 -0.02 1.88 16 54 H 0.08 2.85 6.86 -2.38 -0.02 2.83 16 55 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -77.93 419.83 3.20 -74.73 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.83 Total: 13.51 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 6.42 Total: 9.91 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -4.55 Total: -112.74 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -1.52 Total: -34.67 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -77.93 3.20 -74.73 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131698284.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.616 kcal (2) G-P(sol) polarization free energy of solvation -77.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds