Wall clock time and date at job start Tue Mar 31 2020 21:32:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42902 * 114.00328 * 2 1
4 4 C 1.52993 * 109.47544 * 179.97438 * 3 2 1
5 5 C 1.53000 * 109.47664 * 184.34591 * 4 3 2
6 6 N 1.46497 * 109.44763 * 302.56688 * 5 4 3
7 7 C 1.34777 * 119.99926 * 296.78476 * 6 5 4
8 8 O 1.21612 * 119.99981 * 5.14543 * 7 6 5
9 9 C 1.47100 * 120.00100 * 185.15186 * 7 6 5
10 10 C 1.32987 * 120.00410 * 179.97438 * 9 7 6
11 11 C 1.50702 * 120.00503 * 179.97438 * 10 9 7
12 12 C 1.52997 * 109.46893 * 0.02562 * 11 10 9
13 13 C 1.53004 * 109.46997 * 119.99884 * 11 10 9
14 14 C 1.52992 * 109.47039 * 240.00058 * 11 10 9
15 15 C 1.53042 * 109.45502 * 62.52970 * 5 4 3
16 16 C 1.53196 * 109.30991 * 181.38866 * 15 5 4
17 17 N 1.46916 * 108.77508 * 305.36184 * 16 15 5
18 18 C 1.36935 * 120.63237 * 233.58445 * 17 16 15
19 19 H 1.08002 * 119.99812 * 31.76197 * 18 17 16
20 20 C 1.38809 * 119.99995 * 212.03021 * 18 17 16
21 21 N 1.31615 * 120.00261 * 10.49123 * 20 18 17
22 22 Si 1.86807 * 119.99979 * 190.48890 * 20 18 17
23 23 H 1.48497 * 109.47101 * 0.02562 * 22 20 18
24 24 H 1.48500 * 109.47302 * 120.00383 * 22 20 18
25 25 H 1.48507 * 109.46837 * 240.00475 * 22 20 18
26 26 C 1.46927 * 118.73748 * 53.86270 * 17 16 15
27 27 C 1.53033 * 109.46281 * 182.59397 * 5 4 3
28 28 H 1.09000 * 109.47197 * 180.02562 * 1 2 3
29 29 H 1.09004 * 109.46707 * 299.99769 * 1 2 3
30 30 H 1.08998 * 109.47205 * 59.99955 * 1 2 3
31 31 H 1.09002 * 109.47075 * 59.99974 * 3 2 1
32 32 H 1.08993 * 109.46796 * 300.00621 * 3 2 1
33 33 H 1.09001 * 109.47080 * 64.34568 * 4 3 2
34 34 H 1.09007 * 109.47312 * 304.35383 * 4 3 2
35 35 H 0.97002 * 119.99948 * 116.78180 * 6 5 4
36 36 H 1.08008 * 119.99773 * 359.97438 * 9 7 6
37 37 H 1.08008 * 119.99817 * 359.97438 * 10 9 7
38 38 H 1.09004 * 109.47468 * 59.99415 * 12 11 10
39 39 H 1.08998 * 109.47040 * 180.02562 * 12 11 10
40 40 H 1.09006 * 109.47008 * 299.99915 * 12 11 10
41 41 H 1.09000 * 109.47065 * 60.00516 * 13 11 10
42 42 H 1.08998 * 109.46794 * 180.02562 * 13 11 10
43 43 H 1.08998 * 109.47257 * 300.00440 * 13 11 10
44 44 H 1.08997 * 109.47536 * 60.00288 * 14 11 10
45 45 H 1.09007 * 109.46847 * 179.97438 * 14 11 10
46 46 H 1.09000 * 109.47472 * 299.99758 * 14 11 10
47 47 H 1.09001 * 109.50147 * 61.43599 * 15 5 4
48 48 H 1.09009 * 109.49838 * 301.33573 * 15 5 4
49 49 H 1.09000 * 109.58146 * 185.57411 * 16 15 5
50 50 H 1.09000 * 109.58476 * 65.15586 * 16 15 5
51 51 H 0.97000 * 120.00422 * 179.97438 * 21 20 18
52 52 H 1.09000 * 109.58919 * 65.92659 * 26 17 16
53 53 H 1.09006 * 109.58642 * 186.34908 * 26 17 16
54 54 H 1.09000 * 109.50427 * 298.57160 * 27 5 4
55 55 H 1.09008 * 109.49785 * 58.66845 * 27 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5355 1.1847 0.0006
5 6 4.1575 2.5782 0.1100
6 7 3.6839 3.4120 -0.9976
7 6 3.9851 3.0790 -2.2684
8 8 4.5690 2.0382 -2.5022
9 6 3.6077 3.9747 -3.3726
10 6 3.9053 3.6464 -4.6265
11 6 3.5182 4.5637 -5.7578
12 6 2.8010 5.7926 -5.1953
13 6 4.7758 5.0068 -6.5082
14 6 2.5854 3.8233 -6.7182
15 6 3.7484 3.2162 1.4396
16 6 4.3444 4.6245 1.5303
17 7 5.7964 4.5377 1.3242
18 6 6.6641 5.0764 2.2364
19 1 6.4002 5.1012 3.2834
20 6 7.8803 5.5958 1.8148
21 7 8.1156 5.7610 0.5304
22 14 9.1832 6.0603 3.0703
23 1 8.6760 5.7790 4.4373
24 1 10.4127 5.2643 2.8255
25 1 9.4969 7.5065 2.9461
26 6 6.2999 3.8673 0.1176
27 6 5.6821 2.4626 0.0455
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8901
30 1 -0.3633 0.5138 -0.8900
31 1 1.6887 1.8464 0.8900
32 1 1.6886 1.8463 -0.8899
33 1 3.8629 0.7123 -0.9255
34 1 3.8516 0.5780 0.8493
35 1 3.1535 4.2037 -0.8163
36 1 3.0889 4.8989 -3.1649
37 1 4.4245 2.7224 -4.8341
38 1 3.4659 6.3199 -4.5111
39 1 2.5206 6.4558 -6.0135
40 1 1.9051 5.4772 -4.6603
41 1 5.2871 4.1315 -6.9089
42 1 4.4958 5.6706 -7.3261
43 1 5.4404 5.5342 -5.8239
44 1 1.6895 3.5077 -6.1836
45 1 2.3050 4.4870 -7.5362
46 1 3.0967 2.9481 -7.1189
47 1 4.1218 2.6093 2.2644
48 1 2.6614 3.2769 1.4948
49 1 4.1395 5.0452 2.5147
50 1 3.9033 5.2582 0.7609
51 1 8.9654 6.1242 0.2357
52 1 6.0151 4.4405 -0.7647
53 1 7.3858 3.7882 0.1697
54 1 6.0373 1.8627 0.8834
55 1 5.9716 1.9868 -0.8916
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001151026968.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:32:14
Heat of formation + Delta-G solvation = -76.849165 kcal
Electronic energy + Delta-G solvation = -31696.268523 eV
Core-core repulsion = 27733.118407 eV
Total energy + Delta-G solvation = -3963.150115 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.21 seconds
Orbital eigenvalues (eV)
-41.61946 -39.41567 -38.64855 -38.29855 -36.20431 -33.70287 -33.19868 -32.04283
-31.67556 -30.37049 -28.20851 -28.09433 -27.67054 -26.43971 -24.98549 -24.60890
-23.59155 -22.07614 -21.38960 -20.17731 -19.15908 -18.70341 -18.32780 -17.47010
-16.97249 -16.83190 -16.42831 -16.00315 -15.87946 -15.67536 -15.60904 -15.20070
-15.14731 -15.02739 -14.78255 -14.61975 -14.26626 -13.97363 -13.82266 -13.20766
-13.17847 -13.09772 -13.03138 -12.87148 -12.78882 -12.72629 -12.63205 -12.54575
-12.24866 -12.18562 -12.07341 -11.95574 -11.93154 -11.89146 -11.79262 -11.60323
-11.31447 -11.25915 -10.62674 -10.55499 -10.40698 -10.35106 -9.86789 -8.59104
-7.84748 -5.36208 0.49251 1.45041 1.47318 1.57056 2.28466 2.49353
2.51964 2.82112 3.31426 3.60481 3.71789 3.79181 3.86804 3.98668
4.08991 4.12364 4.17734 4.22312 4.30158 4.38057 4.45157 4.46922
4.53892 4.54586 4.59470 4.69859 4.76107 4.76452 4.79298 4.83537
4.90127 4.90892 5.00095 5.01173 5.02966 5.06012 5.12375 5.13974
5.17771 5.23383 5.26620 5.33831 5.36273 5.43370 5.49256 5.52554
5.59867 5.65255 5.70489 5.79427 6.26156 6.42570 6.74390 7.17357
7.40920 7.87905 8.40860 9.20293
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.007784 B = 0.004147 C = 0.002914
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3596.348035 B = 6750.119235 C = 9607.121740
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.420 6.420
3 C 0.075 3.925
4 C -0.119 4.119
5 C 0.203 3.797
6 N -0.702 5.702
7 C 0.541 3.459
8 O -0.581 6.581
9 C -0.226 4.226
10 C -0.052 4.052
11 C -0.045 4.045
12 C -0.147 4.147
13 C -0.140 4.140
14 C -0.134 4.134
15 C -0.127 4.127
16 C 0.142 3.858
17 N -0.607 5.607
18 C -0.260 4.260
19 H 0.068 0.932
20 C -0.049 4.049
21 N -0.935 5.935
22 Si 0.965 3.035
23 H -0.264 1.264
24 H -0.295 1.295
25 H -0.291 1.291
26 C 0.198 3.802
27 C -0.140 4.140
28 H 0.096 0.904
29 H 0.054 0.946
30 H 0.045 0.955
31 H 0.068 0.932
32 H 0.046 0.954
33 H 0.062 0.938
34 H 0.072 0.928
35 H 0.408 0.592
36 H 0.150 0.850
37 H 0.106 0.894
38 H 0.051 0.949
39 H 0.074 0.926
40 H 0.066 0.934
41 H 0.057 0.943
42 H 0.079 0.921
43 H 0.044 0.956
44 H 0.057 0.943
45 H 0.077 0.923
46 H 0.056 0.944
47 H 0.072 0.928
48 H 0.098 0.902
49 H 0.061 0.939
50 H 0.025 0.975
51 H 0.247 0.753
52 H -0.004 1.004
53 H 0.040 0.960
54 H 0.054 0.946
55 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.257 -3.331 -9.707 20.944
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.340 6.340
3 C -0.001 4.001
4 C -0.158 4.158
5 C 0.116 3.884
6 N -0.353 5.353
7 C 0.332 3.668
8 O -0.463 6.463
9 C -0.246 4.246
10 C -0.072 4.072
11 C -0.045 4.045
12 C -0.204 4.204
13 C -0.197 4.197
14 C -0.191 4.191
15 C -0.166 4.166
16 C 0.017 3.983
17 N -0.330 5.330
18 C -0.391 4.391
19 H 0.086 0.914
20 C -0.244 4.244
21 N -0.582 5.582
22 Si 0.793 3.207
23 H -0.188 1.188
24 H -0.223 1.223
25 H -0.218 1.218
26 C 0.072 3.928
27 C -0.180 4.180
28 H 0.114 0.886
29 H 0.072 0.928
30 H 0.064 0.936
31 H 0.086 0.914
32 H 0.064 0.936
33 H 0.081 0.919
34 H 0.090 0.910
35 H 0.244 0.756
36 H 0.167 0.833
37 H 0.124 0.876
38 H 0.070 0.930
39 H 0.093 0.907
40 H 0.085 0.915
41 H 0.076 0.924
42 H 0.098 0.902
43 H 0.063 0.937
44 H 0.077 0.923
45 H 0.096 0.904
46 H 0.075 0.925
47 H 0.091 0.909
48 H 0.116 0.884
49 H 0.079 0.921
50 H 0.043 0.957
51 H 0.056 0.944
52 H 0.014 0.986
53 H 0.059 0.941
54 H 0.072 0.928
55 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -17.608 -4.136 -9.874 20.607
hybrid contribution 1.102 0.795 0.604 1.487
sum -16.507 -3.341 -9.270 19.224
Atomic orbital electron populations
1.22920 0.79506 1.03750 1.00837 1.87839 1.21576 1.28978 1.95588
1.22463 0.92795 0.84199 1.00662 1.21801 0.94362 0.96607 1.03031
1.19971 0.92528 0.89295 0.86573 1.45884 1.54795 1.29551 1.05026
1.19012 0.78117 0.85720 0.83966 1.90686 1.43659 1.27000 1.84962
1.22848 1.07444 1.01658 0.92699 1.23824 0.91718 0.97758 0.93931
1.19817 0.96761 0.94570 0.93380 1.22005 1.00281 0.96519 1.01613
1.21851 0.96091 1.01639 1.00129 1.21804 0.98433 1.00332 0.98529
1.22294 1.01352 0.97890 0.95047 1.21069 0.83708 0.94329 0.99212
1.44236 1.01102 1.64430 1.23257 1.19557 0.98683 1.31520 0.89302
0.91391 1.25899 1.02017 0.99169 0.97353 1.70160 1.23850 1.49396
1.14748 0.85241 0.79035 0.76985 0.79404 1.18786 1.22260 1.21809
1.20364 0.96843 0.88428 0.87163 1.22442 0.95684 0.99145 1.00709
0.88570 0.92750 0.93588 0.91379 0.93577 0.91927 0.90968 0.75558
0.83282 0.87570 0.92960 0.90704 0.91500 0.92421 0.90223 0.93666
0.92350 0.90412 0.92495 0.90900 0.88427 0.92086 0.95694 0.94395
0.98601 0.94139 0.92767 0.92526
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.46 11.01 113.37 1.25 1.71 16
2 O -0.42 -11.33 10.70 -148.98 -1.59 -12.92 16
3 C 0.07 1.92 5.50 71.98 0.40 2.32 16
4 C -0.12 -3.75 4.43 30.59 0.14 -3.61 16
5 C 0.20 6.70 0.35 3.63 0.00 6.70 16
6 N -0.70 -21.40 3.26 -426.37 -1.39 -22.79 16
7 C 0.54 18.13 7.06 86.57 0.61 18.74 16
8 O -0.58 -23.57 12.49 -4.07 -0.05 -23.62 16
9 C -0.23 -6.02 9.00 23.43 0.21 -5.81 16
10 C -0.05 -1.30 8.33 24.52 0.20 -1.09 16
11 C -0.05 -0.82 0.99 -52.93 -0.05 -0.87 16
12 C -0.15 -2.33 7.13 71.98 0.51 -1.82 16
13 C -0.14 -2.51 8.45 71.98 0.61 -1.90 16
14 C -0.13 -1.94 8.46 71.98 0.61 -1.33 16
15 C -0.13 -3.81 4.69 30.67 0.14 -3.67 16
16 C 0.14 5.33 6.24 86.37 0.54 5.87 16
17 N -0.61 -29.83 2.98 -698.26 -2.08 -31.91 16
18 C -0.26 -14.18 9.58 84.03 0.80 -13.37 16
19 H 0.07 3.58 7.85 -2.91 -0.02 3.56 16
20 C -0.05 -2.76 5.05 84.86 0.43 -2.33 16
21 N -0.94 -56.25 11.07 21.65 0.24 -56.01 16
22 Si 0.96 45.29 29.57 68.60 2.03 47.31 16
23 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16
24 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16
25 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16
26 C 0.20 9.98 5.02 86.51 0.43 10.42 16
27 C -0.14 -5.93 4.63 30.82 0.14 -5.79 16
28 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16
29 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16
30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16
31 H 0.07 1.47 6.25 -2.39 -0.01 1.45 16
32 H 0.05 1.16 7.68 -2.39 -0.02 1.14 16
33 H 0.06 2.33 6.30 -2.39 -0.02 2.31 16
34 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16
35 H 0.41 10.46 7.36 -92.71 -0.68 9.78 16
36 H 0.15 3.22 5.74 -2.91 -0.02 3.20 16
37 H 0.11 3.03 7.49 -2.91 -0.02 3.01 16
38 H 0.05 0.96 7.50 -2.38 -0.02 0.94 16
39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16
40 H 0.07 0.96 7.50 -2.38 -0.02 0.94 16
41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16
42 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16
43 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16
44 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16
45 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16
46 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
47 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16
48 H 0.10 2.19 6.34 -2.38 -0.02 2.18 16
49 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16
50 H 0.03 0.90 7.00 -2.39 -0.02 0.88 16
51 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16
52 H 0.00 -0.22 7.64 -2.39 -0.02 -0.24 16
53 H 0.04 2.38 6.13 -2.38 -0.01 2.37 16
54 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16
55 H 0.06 2.58 6.15 -2.38 -0.01 2.56 16
Total: -1.00 -71.08 416.33 4.30 -66.77
By element:
Atomic # 1 Polarization: 28.82 SS G_CDS: 0.17 Total: 28.99 kcal
Atomic # 6 Polarization: -2.81 SS G_CDS: 6.98 Total: 4.17 kcal
Atomic # 7 Polarization: -107.47 SS G_CDS: -3.23 Total: -110.70 kcal
Atomic # 8 Polarization: -34.90 SS G_CDS: -1.65 Total: -36.54 kcal
Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal
Total: -71.08 4.30 -66.77 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001151026968.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.076 kcal
(2) G-P(sol) polarization free energy of solvation -71.075 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.152 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.773 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.849 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.22 seconds