Wall clock time and date at job start Tue Mar 31 2020 21:38:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42904 * 113.99888 * 2 1
4 4 C 1.52996 * 109.47016 * 179.97438 * 3 2 1
5 5 C 1.53000 * 109.46041 * 60.03280 * 4 3 2
6 6 N 1.46503 * 109.46799 * 299.96973 * 5 4 3
7 7 C 1.34779 * 119.99534 * 179.97438 * 6 5 4
8 8 O 1.21616 * 120.00118 * 0.02562 * 7 6 5
9 9 C 1.47104 * 119.99786 * 179.97438 * 7 6 5
10 10 C 1.32997 * 119.99909 * 180.02562 * 9 7 6
11 11 C 1.50699 * 119.99531 * 180.02562 * 10 9 7
12 12 C 1.52996 * 109.47612 * 359.97438 * 11 10 9
13 13 C 1.53002 * 109.47077 * 120.00103 * 11 10 9
14 14 C 1.53001 * 109.46879 * 239.99563 * 11 10 9
15 15 C 1.53042 * 109.46071 * 180.02562 * 4 3 2
16 16 C 1.53196 * 109.31301 * 58.64167 * 15 4 3
17 17 N 1.46919 * 108.77357 * 54.63738 * 16 15 4
18 18 C 1.36935 * 120.62952 * 126.36714 * 17 16 15
19 19 H 1.07992 * 120.00276 * 332.45452 * 18 17 16
20 20 C 1.38815 * 120.00026 * 152.17450 * 18 17 16
21 21 N 1.31620 * 119.99785 * 343.17001 * 20 18 17
22 22 Si 1.86799 * 120.00242 * 163.17219 * 20 18 17
23 23 H 1.48499 * 109.47051 * 59.99668 * 22 20 18
24 24 H 1.48497 * 109.47273 * 180.02562 * 22 20 18
25 25 H 1.48505 * 109.46803 * 299.99780 * 22 20 18
26 26 C 1.46930 * 118.74055 * 306.64082 * 17 16 15
27 27 C 1.52762 * 109.00426 * 53.31040 * 26 17 16
28 28 H 1.09002 * 109.46983 * 59.99847 * 1 2 3
29 29 H 1.09007 * 109.46958 * 179.97438 * 1 2 3
30 30 H 1.08993 * 109.47177 * 299.99760 * 1 2 3
31 31 H 1.09001 * 109.46437 * 60.00623 * 3 2 1
32 32 H 1.08997 * 109.47100 * 300.00300 * 3 2 1
33 33 H 1.08994 * 109.47109 * 59.96906 * 5 4 3
34 34 H 1.09000 * 109.47488 * 179.97438 * 5 4 3
35 35 H 0.96996 * 120.00367 * 359.97438 * 6 5 4
36 36 H 1.08003 * 120.00033 * 0.02562 * 9 7 6
37 37 H 1.07996 * 119.99795 * 359.97438 * 10 9 7
38 38 H 1.09002 * 109.46585 * 60.00069 * 12 11 10
39 39 H 1.09001 * 109.47192 * 179.97438 * 12 11 10
40 40 H 1.08996 * 109.47504 * 300.00242 * 12 11 10
41 41 H 1.09006 * 109.47249 * 59.99684 * 13 11 10
42 42 H 1.09001 * 109.47618 * 179.97438 * 13 11 10
43 43 H 1.09002 * 109.47186 * 299.99972 * 13 11 10
44 44 H 1.09005 * 109.46811 * 60.00836 * 14 11 10
45 45 H 1.09001 * 109.47085 * 180.02562 * 14 11 10
46 46 H 1.08994 * 109.47436 * 300.00639 * 14 11 10
47 47 H 1.09005 * 109.49382 * 298.69280 * 15 4 3
48 48 H 1.08991 * 109.52573 * 178.61373 * 15 4 3
49 49 H 1.09000 * 109.58299 * 294.85003 * 16 15 4
50 50 H 1.08994 * 109.70288 * 174.49711 * 16 15 4
51 51 H 0.97003 * 120.00199 * 179.97438 * 21 20 18
52 52 H 1.08999 * 109.58738 * 173.14187 * 26 17 16
53 53 H 1.08996 * 109.58558 * 293.57263 * 26 17 16
54 54 H 1.09005 * 109.56252 * 185.54994 * 27 26 17
55 55 H 1.08999 * 109.38709 * 65.51901 * 27 26 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 0.0006
5 6 3.9872 0.4259 -1.2488
6 7 3.3917 -0.9127 -1.2490
7 6 3.6507 -1.7651 -2.2604
8 8 4.3790 -1.4233 -3.1724
9 6 3.0532 -3.1094 -2.2604
10 6 3.3092 -3.9508 -3.2581
11 6 2.6967 -5.3277 -3.2583
12 6 1.8309 -5.5011 -2.0089
13 6 1.8304 -5.5003 -4.5076
14 6 3.8074 -6.3799 -3.2586
15 6 4.1576 2.5829 0.0013
16 6 3.6757 3.3514 1.2358
17 7 3.9761 2.5567 2.4345
18 6 4.6850 3.1003 3.4723
19 1 5.3905 3.8964 3.2860
20 6 4.4926 2.6320 4.7649
21 7 3.4235 1.9211 5.0549
22 14 5.7507 3.0108 6.0926
23 1 5.8684 4.4819 6.2578
24 1 5.3159 2.4013 7.3750
25 1 7.0685 2.4497 5.7002
26 6 3.5068 1.1658 2.4959
27 6 3.9858 0.4236 1.2496
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8899
31 1 1.6886 1.8463 0.8901
32 1 1.6886 1.8464 -0.8899
33 1 3.6654 0.9669 -2.1386
34 1 5.0738 0.3401 -1.2488
35 1 2.8111 -1.1854 -0.5215
36 1 2.4068 -3.4131 -1.4503
37 1 3.9553 -3.6469 -4.0684
38 1 1.0396 -4.7514 -2.0084
39 1 1.3875 -6.4968 -2.0094
40 1 2.4483 -5.3783 -1.1191
41 1 2.4476 -5.3769 -5.3977
42 1 1.3877 -6.4963 -4.5081
43 1 1.0391 -4.7506 -4.5075
44 1 4.4245 -6.2570 -2.3685
45 1 3.3644 -7.3758 -3.2593
46 1 4.4245 -6.2566 -4.1485
47 1 3.8552 3.1161 -0.9001
48 1 5.2439 2.4982 0.0266
49 1 2.6005 3.5164 1.1668
50 1 4.1895 4.3108 1.2952
51 1 3.2891 1.5935 5.9580
52 1 3.9113 0.6825 3.3853
53 1 2.4175 1.1489 2.5318
54 1 3.5612 -0.5803 1.2368
55 1 5.0737 0.3582 1.2632
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001162171394.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:38:42
Heat of formation + Delta-G solvation = -75.101877 kcal
Electronic energy + Delta-G solvation = -31230.635128 eV
Core-core repulsion = 27267.560780 eV
Total energy + Delta-G solvation = -3963.074347 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.40 seconds
Orbital eigenvalues (eV)
-41.28441 -40.13878 -38.55371 -38.04224 -36.25228 -34.58965 -32.82654 -32.19151
-31.64199 -28.78971 -28.22686 -28.14471 -28.07715 -26.29297 -25.89471 -24.25157
-23.77208 -22.36451 -21.17050 -19.87062 -19.15402 -18.67180 -18.18230 -17.19518
-17.00450 -16.82878 -16.76581 -16.11089 -15.89890 -15.68070 -15.45631 -15.27741
-15.16076 -15.00788 -14.77991 -14.52794 -14.45057 -14.02685 -13.76548 -13.39146
-13.19161 -13.15167 -13.09930 -12.96409 -12.87165 -12.58033 -12.56097 -12.52374
-12.39455 -12.21798 -11.98136 -11.91323 -11.90701 -11.81300 -11.58781 -11.45097
-11.26509 -11.10228 -10.82802 -10.55297 -10.44150 -10.40288 -9.84357 -8.63550
-7.85571 -5.29665 0.46703 1.46584 1.49214 1.55296 2.30829 2.40167
2.52180 2.88632 3.29084 3.66875 3.69334 3.75206 3.86596 3.89650
3.99966 4.10494 4.21138 4.28725 4.32587 4.44896 4.48050 4.50402
4.53685 4.62983 4.64650 4.69373 4.75474 4.79019 4.79792 4.81054
4.89965 4.92984 4.93162 5.02684 5.05121 5.05855 5.15888 5.16978
5.22707 5.26178 5.26364 5.33279 5.38085 5.44751 5.50361 5.51645
5.59951 5.64435 5.67801 5.81136 6.23773 6.41325 6.79260 7.17719
7.38441 7.89583 8.40170 9.20212
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.015827 B = 0.002568 C = 0.002500
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1768.682395 B =10899.807190 C =11195.874898
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.402 6.402
3 C 0.080 3.920
4 C -0.049 4.049
5 C 0.141 3.859
6 N -0.699 5.699
7 C 0.533 3.467
8 O -0.603 6.603
9 C -0.224 4.224
10 C -0.048 4.048
11 C -0.046 4.046
12 C -0.149 4.149
13 C -0.137 4.137
14 C -0.138 4.138
15 C -0.112 4.112
16 C 0.141 3.859
17 N -0.609 5.609
18 C -0.261 4.261
19 H 0.065 0.935
20 C -0.049 4.049
21 N -0.932 5.932
22 Si 0.962 3.038
23 H -0.276 1.276
24 H -0.295 1.295
25 H -0.282 1.282
26 C 0.185 3.815
27 C -0.111 4.111
28 H 0.049 0.951
29 H 0.104 0.896
30 H 0.034 0.966
31 H 0.044 0.956
32 H 0.060 0.940
33 H 0.065 0.935
34 H 0.053 0.947
35 H 0.417 0.583
36 H 0.150 0.850
37 H 0.109 0.891
38 H 0.062 0.938
39 H 0.072 0.928
40 H 0.057 0.943
41 H 0.057 0.943
42 H 0.076 0.924
43 H 0.054 0.946
44 H 0.051 0.949
45 H 0.076 0.924
46 H 0.058 0.942
47 H 0.088 0.912
48 H 0.063 0.937
49 H 0.022 0.978
50 H 0.055 0.945
51 H 0.249 0.751
52 H 0.047 0.953
53 H 0.003 0.997
54 H 0.065 0.935
55 H 0.043 0.957
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.897 -13.798 -16.931 22.904
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.321 6.321
3 C 0.003 3.997
4 C -0.050 4.050
5 C 0.017 3.983
6 N -0.354 5.354
7 C 0.323 3.677
8 O -0.488 6.488
9 C -0.245 4.245
10 C -0.069 4.069
11 C -0.046 4.046
12 C -0.206 4.206
13 C -0.194 4.194
14 C -0.196 4.196
15 C -0.151 4.151
16 C 0.016 3.984
17 N -0.333 5.333
18 C -0.392 4.392
19 H 0.083 0.917
20 C -0.245 4.245
21 N -0.578 5.578
22 Si 0.791 3.209
23 H -0.201 1.201
24 H -0.221 1.221
25 H -0.208 1.208
26 C 0.060 3.940
27 C -0.150 4.150
28 H 0.068 0.932
29 H 0.122 0.878
30 H 0.053 0.947
31 H 0.062 0.938
32 H 0.078 0.922
33 H 0.083 0.917
34 H 0.072 0.928
35 H 0.260 0.740
36 H 0.167 0.833
37 H 0.127 0.873
38 H 0.081 0.919
39 H 0.091 0.909
40 H 0.076 0.924
41 H 0.076 0.924
42 H 0.095 0.905
43 H 0.074 0.926
44 H 0.071 0.929
45 H 0.095 0.905
46 H 0.077 0.923
47 H 0.107 0.893
48 H 0.081 0.919
49 H 0.039 0.961
50 H 0.074 0.926
51 H 0.058 0.942
52 H 0.065 0.935
53 H 0.022 0.978
54 H 0.084 0.916
55 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges -6.363 -13.737 -17.345 23.023
hybrid contribution 0.240 0.676 1.513 1.675
sum -6.122 -13.060 -15.833 21.418
Atomic orbital electron populations
1.22863 0.79694 1.03859 1.00128 1.87447 1.21095 1.28151 1.95429
1.22559 0.92245 0.84619 1.00250 1.20653 0.93898 0.96286 0.94133
1.21227 0.97172 0.82946 0.96957 1.46200 1.49702 1.14153 1.25325
1.19178 0.80482 0.86650 0.81391 1.90718 1.40694 1.79285 1.38060
1.22788 1.05776 0.92777 1.03133 1.23834 0.93218 0.94323 0.95480
1.19831 0.96136 0.90980 0.97691 1.22019 0.99466 1.02880 0.96221
1.21827 0.99098 1.02744 0.95704 1.21841 0.97448 0.98202 1.02065
1.21880 1.00473 0.93789 0.98957 1.21071 0.97044 0.94021 0.86296
1.44284 1.64131 1.08713 1.16157 1.19459 1.14979 1.18166 0.86571
0.91747 1.25726 0.98334 1.01399 0.99010 1.70167 1.26721 1.41533
1.19382 0.85420 0.79142 0.77949 0.78406 1.20137 1.22080 1.20785
1.20413 0.94651 0.84038 0.94927 1.21876 0.99537 0.98474 0.95087
0.93243 0.87799 0.94710 0.93756 0.92167 0.91662 0.92835 0.74046
0.83295 0.87315 0.91940 0.90856 0.92352 0.92360 0.90526 0.92642
0.92948 0.90489 0.92326 0.89342 0.91850 0.96052 0.92622 0.94217
0.93473 0.97850 0.91638 0.93827
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.63 11.01 113.37 1.25 1.88 16
2 O -0.40 -10.66 6.77 -148.98 -1.01 -11.67 16
3 C 0.08 2.31 4.05 71.98 0.29 2.60 16
4 C -0.05 -1.53 0.51 -52.16 -0.03 -1.55 16
5 C 0.14 4.20 4.56 86.38 0.39 4.59 16
6 N -0.70 -19.82 4.60 -466.70 -2.15 -21.96 16
7 C 0.53 15.91 7.76 86.57 0.67 16.58 16
8 O -0.60 -22.33 16.22 -4.08 -0.07 -22.39 16
9 C -0.22 -5.03 9.00 23.43 0.21 -4.82 16
10 C -0.05 -0.97 8.33 24.52 0.20 -0.77 16
11 C -0.05 -0.64 0.99 -52.93 -0.05 -0.69 16
12 C -0.15 -1.81 7.13 71.98 0.51 -1.30 16
13 C -0.14 -1.58 8.46 71.98 0.61 -0.97 16
14 C -0.14 -1.72 8.45 71.98 0.61 -1.11 16
15 C -0.11 -3.52 4.91 30.67 0.15 -3.37 16
16 C 0.14 5.52 6.05 86.37 0.52 6.05 16
17 N -0.61 -29.78 3.00 -699.95 -2.10 -31.88 16
18 C -0.26 -14.25 9.58 84.03 0.81 -13.44 16
19 H 0.06 3.43 7.88 -2.91 -0.02 3.41 16
20 C -0.05 -2.73 4.92 84.86 0.42 -2.32 16
21 N -0.93 -54.62 11.18 21.65 0.24 -54.37 16
22 Si 0.96 44.92 29.59 68.60 2.03 46.95 16
23 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16
24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16
25 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16
26 C 0.19 8.71 4.81 86.22 0.41 9.13 16
27 C -0.11 -4.13 4.57 30.53 0.14 -3.99 16
28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16
29 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16
30 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16
31 H 0.04 1.53 4.99 -2.39 -0.01 1.52 16
32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16
33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16
34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16
35 H 0.42 11.19 4.67 -92.71 -0.43 10.75 16
36 H 0.15 2.70 5.74 -2.91 -0.02 2.68 16
37 H 0.11 2.53 7.49 -2.91 -0.02 2.50 16
38 H 0.06 0.75 7.50 -2.39 -0.02 0.74 16
39 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16
40 H 0.06 0.77 7.50 -2.39 -0.02 0.75 16
41 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16
42 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16
43 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16
44 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16
45 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16
46 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16
47 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16
48 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16
49 H 0.02 0.83 6.69 -2.39 -0.02 0.82 16
50 H 0.06 2.15 7.93 -2.39 -0.02 2.13 16
51 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16
52 H 0.05 2.58 6.05 -2.39 -0.01 2.56 16
53 H 0.00 0.17 6.70 -2.39 -0.02 0.16 16
54 H 0.07 2.28 6.49 -2.38 -0.02 2.26 16
55 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16
Total: -1.00 -67.53 416.01 4.49 -63.04
By element:
Atomic # 1 Polarization: 25.36 SS G_CDS: 0.42 Total: 25.78 kcal
Atomic # 6 Polarization: -0.60 SS G_CDS: 7.12 Total: 6.52 kcal
Atomic # 7 Polarization: -104.21 SS G_CDS: -4.00 Total: -108.22 kcal
Atomic # 8 Polarization: -32.99 SS G_CDS: -1.08 Total: -34.06 kcal
Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal
Total: -67.53 4.49 -63.04 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001162171394.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.063 kcal
(2) G-P(sol) polarization free energy of solvation -67.528 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.591 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.039 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.102 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.40 seconds