Wall clock time and date at job start Tue Mar 31 2020 21:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00303 * 2 1 4 4 C 1.52994 * 109.47001 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46053 * 60.03072 * 4 3 2 6 6 N 1.46500 * 109.47116 * 299.96902 * 5 4 3 7 7 C 1.34773 * 120.00268 * 179.97438 * 6 5 4 8 8 O 1.21610 * 119.99882 * 0.02562 * 7 6 5 9 9 C 1.47099 * 119.99954 * 179.97438 * 7 6 5 10 10 C 1.33001 * 119.99998 * 173.13934 * 9 7 6 11 11 C 1.50705 * 119.99526 * 351.78578 * 10 9 7 12 12 C 1.52991 * 109.47387 * 72.16736 * 11 10 9 13 13 C 1.53001 * 109.46706 * 192.16880 * 11 10 9 14 14 C 1.53000 * 109.47108 * 312.16454 * 11 10 9 15 15 C 1.53041 * 109.46122 * 179.97438 * 4 3 2 16 16 C 1.53193 * 109.30987 * 58.64257 * 15 4 3 17 17 N 1.46923 * 108.77360 * 54.64013 * 16 15 4 18 18 C 1.36934 * 120.63341 * 126.36763 * 17 16 15 19 19 H 1.08001 * 119.99948 * 343.05600 * 18 17 16 20 20 C 1.38816 * 120.00279 * 162.77223 * 18 17 16 21 21 N 1.31617 * 119.99641 * 322.33311 * 20 18 17 22 22 Si 1.86800 * 119.99940 * 142.32665 * 20 18 17 23 23 H 1.48498 * 109.46881 * 94.99538 * 22 20 18 24 24 H 1.48501 * 109.47059 * 215.00004 * 22 20 18 25 25 H 1.48504 * 109.47020 * 334.99982 * 22 20 18 26 26 C 1.46932 * 118.73682 * 306.63895 * 17 16 15 27 27 C 1.52757 * 109.00632 * 53.31412 * 26 17 16 28 28 H 1.09005 * 109.46844 * 299.99878 * 1 2 3 29 29 H 1.08998 * 109.47095 * 59.99787 * 1 2 3 30 30 H 1.08995 * 109.47339 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46836 * 59.99999 * 3 2 1 32 32 H 1.09000 * 109.46888 * 300.00241 * 3 2 1 33 33 H 1.09007 * 109.47124 * 59.96814 * 5 4 3 34 34 H 1.08997 * 109.47210 * 179.97438 * 5 4 3 35 35 H 0.97009 * 119.99520 * 0.02562 * 6 5 4 36 36 H 1.08001 * 120.00459 * 353.15006 * 9 7 6 37 37 H 1.07997 * 120.00362 * 171.77812 * 10 9 7 38 38 H 1.09008 * 109.47673 * 95.26253 * 12 11 10 39 39 H 1.09004 * 109.47354 * 215.26389 * 12 11 10 40 40 H 1.09005 * 109.47437 * 335.26302 * 12 11 10 41 41 H 1.08993 * 109.47622 * 59.99829 * 13 11 10 42 42 H 1.09003 * 109.46977 * 180.02562 * 13 11 10 43 43 H 1.09006 * 109.46968 * 299.99344 * 13 11 10 44 44 H 1.09001 * 109.47460 * 23.57285 * 14 11 10 45 45 H 1.08997 * 109.47101 * 143.58020 * 14 11 10 46 46 H 1.09007 * 109.47183 * 263.57623 * 14 11 10 47 47 H 1.09007 * 109.49667 * 298.69573 * 15 4 3 48 48 H 1.09000 * 109.50278 * 178.59573 * 15 4 3 49 49 H 1.09003 * 109.59059 * 294.84893 * 16 15 4 50 50 H 1.08996 * 109.70249 * 174.49431 * 16 15 4 51 51 H 0.97003 * 119.99450 * 180.02562 * 21 20 18 52 52 H 1.09001 * 109.58337 * 173.14464 * 26 17 16 53 53 H 1.09000 * 109.58586 * 293.57072 * 26 17 16 54 54 H 1.09001 * 109.56436 * 185.55311 * 27 26 17 55 55 H 1.08998 * 109.38928 * 65.51102 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9872 0.4256 -1.2488 6 7 3.3917 -0.9129 -1.2491 7 6 3.6506 -1.7654 -2.2603 8 8 4.3789 -1.4238 -3.1723 9 6 3.0530 -3.1096 -2.2602 10 6 3.1958 -3.9009 -3.3197 11 6 3.8059 -3.3601 -4.5872 12 6 5.3073 -3.1503 -4.3814 13 6 3.5815 -4.3563 -5.7265 14 6 3.1480 -2.0247 -4.9404 15 6 4.1578 2.5827 0.0000 16 6 3.6760 3.3522 1.2339 17 7 3.9766 2.5585 2.4333 18 6 4.6856 3.1029 3.4706 19 1 5.2592 4.0051 3.3179 20 6 4.6622 2.4985 4.7200 21 7 3.5499 1.9559 5.1679 22 14 6.2096 2.4550 5.7656 23 1 6.2002 3.5997 6.7114 24 1 6.2555 1.1821 6.5291 25 1 7.4033 2.5486 4.8871 26 6 3.5071 1.1676 2.4959 27 6 3.9860 0.4244 1.2502 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.6654 0.9666 -2.1387 34 1 5.0738 0.3398 -1.2487 35 1 2.8104 -1.1853 -0.5217 36 1 2.4982 -3.4540 -1.3999 37 1 2.8746 -4.9309 -3.2716 38 1 5.8493 -4.0242 -4.7431 39 1 5.6301 -2.2681 -4.9343 40 1 5.5124 -3.0091 -3.3202 41 1 2.5119 -4.5058 -5.8731 42 1 4.0231 -3.9654 -6.6432 43 1 4.0502 -5.3077 -5.4748 44 1 2.7280 -1.5770 -4.0397 45 1 3.8939 -1.3535 -5.3660 46 1 2.3532 -2.1923 -5.6674 47 1 3.8554 3.1151 -0.9018 48 1 5.2442 2.4975 0.0256 49 1 2.6008 3.5173 1.1649 50 1 4.1899 4.3116 1.2925 51 1 3.5335 1.5338 6.0411 52 1 3.9117 0.6852 3.3856 53 1 2.4179 1.1509 2.5319 54 1 3.5613 -0.5794 1.2382 55 1 5.0740 0.3590 1.2637 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162171395.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:46 Heat of formation + Delta-G solvation = -33.380996 kcal Electronic energy + Delta-G solvation = -32013.722238 eV Core-core repulsion = 28052.457043 eV Total energy + Delta-G solvation = -3961.265194 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.56222 -40.60256 -38.06310 -37.77749 -36.04528 -34.53325 -32.92966 -32.15232 -31.68616 -28.79007 -28.16679 -28.07743 -27.99289 -26.25345 -25.86283 -24.11890 -23.76102 -22.33458 -21.46274 -19.98781 -19.35243 -18.45275 -17.80670 -17.16337 -17.05761 -16.71530 -16.61617 -16.37237 -15.93489 -15.56988 -15.46531 -15.29416 -14.98363 -14.82591 -14.78851 -14.54015 -14.34991 -14.02956 -13.89558 -13.56701 -13.40576 -13.24712 -13.08515 -12.99812 -12.62050 -12.60537 -12.51492 -12.37870 -12.24489 -12.05089 -11.91200 -11.78722 -11.72961 -11.65586 -11.47999 -11.42186 -11.20844 -11.07100 -10.52169 -10.36687 -10.30914 -10.14839 -9.56840 -8.84589 -7.97269 -5.12901 0.57076 1.42515 1.49118 1.58620 2.41623 2.50748 2.53172 2.92893 3.13657 3.67285 3.75558 3.78571 3.86460 3.96228 4.00689 4.23793 4.27011 4.31085 4.44887 4.50203 4.52466 4.53198 4.62768 4.65294 4.67529 4.67654 4.79121 4.80341 4.83381 4.89139 4.89869 4.90862 4.98030 5.03057 5.05817 5.16927 5.22305 5.24310 5.26614 5.28131 5.31598 5.36151 5.42217 5.45178 5.56707 5.59413 5.66255 5.74814 5.79157 5.82125 6.24443 6.29861 6.92890 7.10966 7.54662 7.88747 8.37695 9.10340 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017485 B = 0.002830 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.944491 B = 9891.503013 C =10333.417578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.400 6.400 3 C 0.080 3.920 4 C -0.050 4.050 5 C 0.147 3.853 6 N -0.706 5.706 7 C 0.520 3.480 8 O -0.555 6.555 9 C -0.229 4.229 10 C -0.049 4.049 11 C -0.044 4.044 12 C -0.101 4.101 13 C -0.137 4.137 14 C -0.111 4.111 15 C -0.111 4.111 16 C 0.141 3.859 17 N -0.607 5.607 18 C -0.270 4.270 19 H 0.068 0.932 20 C -0.038 4.038 21 N -0.911 5.911 22 Si 0.933 3.067 23 H -0.288 1.288 24 H -0.293 1.293 25 H -0.276 1.276 26 C 0.178 3.822 27 C -0.108 4.108 28 H 0.033 0.967 29 H 0.049 0.951 30 H 0.103 0.897 31 H 0.042 0.958 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.412 0.588 36 H 0.143 0.857 37 H 0.152 0.848 38 H 0.043 0.957 39 H 0.041 0.959 40 H 0.043 0.957 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.049 0.951 45 H 0.041 0.959 46 H 0.038 0.962 47 H 0.088 0.912 48 H 0.063 0.937 49 H 0.022 0.978 50 H 0.055 0.945 51 H 0.250 0.750 52 H 0.042 0.958 53 H 0.005 0.995 54 H 0.067 0.933 55 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.646 -11.525 -19.534 23.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.319 6.319 3 C 0.004 3.996 4 C -0.050 4.050 5 C 0.023 3.977 6 N -0.363 5.363 7 C 0.311 3.689 8 O -0.437 6.437 9 C -0.249 4.249 10 C -0.068 4.068 11 C -0.044 4.044 12 C -0.158 4.158 13 C -0.194 4.194 14 C -0.168 4.168 15 C -0.150 4.150 16 C 0.016 3.984 17 N -0.331 5.331 18 C -0.399 4.399 19 H 0.086 0.914 20 C -0.235 4.235 21 N -0.556 5.556 22 Si 0.762 3.238 23 H -0.215 1.215 24 H -0.219 1.219 25 H -0.201 1.201 26 C 0.053 3.947 27 C -0.147 4.147 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.255 0.745 36 H 0.161 0.839 37 H 0.170 0.830 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.107 0.893 48 H 0.082 0.918 49 H 0.040 0.960 50 H 0.074 0.926 51 H 0.059 0.941 52 H 0.061 0.939 53 H 0.023 0.977 54 H 0.085 0.915 55 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.087 -11.475 -19.988 23.602 hybrid contribution 0.254 0.456 1.702 1.780 sum -4.834 -11.019 -18.286 21.890 Atomic orbital electron populations 1.22851 0.79804 1.03784 1.00080 1.87464 1.20965 1.28091 1.95414 1.22550 0.92338 0.84615 1.00134 1.20654 0.93763 0.96236 0.94362 1.21121 0.97025 0.83102 0.96479 1.46256 1.50035 1.14075 1.25905 1.18917 0.81932 0.86418 0.81617 1.90893 1.38968 1.78345 1.35534 1.22710 1.05965 0.94142 1.02131 1.24087 0.90859 0.99198 0.92683 1.19710 0.95774 0.95524 0.93405 1.21768 0.93605 0.99285 1.01179 1.21980 1.02078 0.98213 0.97133 1.22119 0.98811 0.95753 1.00166 1.21868 1.00520 0.93861 0.98767 1.21064 0.97078 0.94050 0.86238 1.44422 1.64312 1.08682 1.15655 1.19367 1.20624 1.10754 0.89194 0.91441 1.25232 0.98509 1.02713 0.97077 1.70429 1.24828 1.41949 1.18387 0.85786 0.82656 0.76779 0.78622 1.21484 1.21941 1.20091 1.20465 0.94743 0.84102 0.95429 1.21814 0.99650 0.98435 0.94780 0.94787 0.93261 0.87902 0.93986 0.92201 0.91788 0.92968 0.74548 0.83896 0.83023 0.93788 0.94004 0.93841 0.91787 0.92616 0.91570 0.93252 0.94004 0.94319 0.89308 0.91811 0.96021 0.92626 0.94075 0.93943 0.97734 0.91471 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.40 -10.23 6.77 -148.98 -1.01 -11.24 16 3 C 0.08 2.24 4.04 71.98 0.29 2.53 16 4 C -0.05 -1.48 0.51 -52.15 -0.03 -1.50 16 5 C 0.15 4.06 4.56 86.38 0.39 4.45 16 6 N -0.71 -18.33 4.60 -466.71 -2.15 -20.48 16 7 C 0.52 13.49 5.78 86.57 0.50 13.99 16 8 O -0.56 -16.51 8.61 -4.06 -0.03 -16.55 16 9 C -0.23 -4.54 9.47 23.43 0.22 -4.32 16 10 C -0.05 -0.83 8.49 24.52 0.21 -0.62 16 11 C -0.04 -0.85 0.75 -52.93 -0.04 -0.89 16 12 C -0.10 -2.32 7.62 71.98 0.55 -1.78 16 13 C -0.14 -1.93 7.99 71.98 0.58 -1.35 16 14 C -0.11 -2.54 7.57 71.98 0.54 -2.00 16 15 C -0.11 -3.39 4.90 30.67 0.15 -3.24 16 16 C 0.14 5.42 6.05 86.36 0.52 5.94 16 17 N -0.61 -29.29 3.03 -699.92 -2.12 -31.42 16 18 C -0.27 -14.72 9.53 84.03 0.80 -13.92 16 19 H 0.07 3.63 7.97 -2.91 -0.02 3.61 16 20 C -0.04 -2.13 4.41 84.86 0.37 -1.75 16 21 N -0.91 -53.46 11.92 21.65 0.26 -53.20 16 22 Si 0.93 44.61 29.68 68.60 2.04 46.64 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 24 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 26 C 0.18 8.22 5.11 86.22 0.44 8.66 16 27 C -0.11 -3.90 4.58 30.53 0.14 -3.76 16 28 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.04 1.41 4.99 -2.39 -0.01 1.40 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.41 10.45 4.67 -92.70 -0.43 10.02 16 36 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 37 H 0.15 1.64 8.01 -2.91 -0.02 1.62 16 38 H 0.04 0.85 7.75 -2.38 -0.02 0.83 16 39 H 0.04 1.08 6.95 -2.38 -0.02 1.06 16 40 H 0.04 1.17 5.87 -2.38 -0.01 1.15 16 41 H 0.06 0.77 8.12 -2.39 -0.02 0.75 16 42 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.07 0.78 8.12 -2.38 -0.02 0.76 16 44 H 0.05 1.27 4.55 -2.39 -0.01 1.25 16 45 H 0.04 1.08 6.84 -2.39 -0.02 1.07 16 46 H 0.04 0.76 7.74 -2.38 -0.02 0.74 16 47 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 48 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.02 0.83 6.69 -2.39 -0.02 0.81 16 50 H 0.06 2.12 7.88 -2.39 -0.02 2.10 16 51 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 52 H 0.04 2.27 5.95 -2.39 -0.01 2.25 16 53 H 0.00 0.23 6.70 -2.39 -0.02 0.21 16 54 H 0.07 2.26 6.49 -2.39 -0.02 2.25 16 55 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -64.56 401.41 4.30 -60.26 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.43 Total: 23.67 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 6.89 Total: 2.31 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -4.01 Total: -105.10 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -1.04 Total: -27.79 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.04 Total: 46.64 kcal Total: -64.56 4.30 -60.26 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162171395.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.878 kcal (2) G-P(sol) polarization free energy of solvation -64.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds