Wall clock time and date at job start Tue Mar 31 2020 21:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 120.00121 * 2 1 4 4 C 1.52996 * 109.47072 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.47345 * 240.00071 * 3 2 1 6 6 C 1.52996 * 109.47111 * 300.00481 * 5 3 2 7 7 C 1.50700 * 109.46813 * 120.00296 * 3 2 1 8 8 O 1.21276 * 120.00266 * 0.02562 * 7 3 2 9 9 N 1.34780 * 119.99888 * 179.97438 * 7 3 2 10 10 C 1.46503 * 120.00187 * 179.97438 * 9 7 3 11 11 C 1.52991 * 109.47076 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46491 * 299.97684 * 11 10 9 13 13 O 1.42904 * 109.47220 * 60.02535 * 12 11 10 14 14 C 1.42893 * 113.99932 * 180.02562 * 13 12 11 15 15 C 1.53042 * 109.45868 * 180.02562 * 11 10 9 16 16 C 1.53192 * 109.31216 * 178.61821 * 15 11 10 17 17 N 1.46930 * 108.77834 * 54.63480 * 16 15 11 18 18 C 1.36932 * 120.62872 * 126.36699 * 17 16 15 19 19 H 1.08002 * 120.00663 * 332.45264 * 18 17 16 20 20 C 1.38819 * 119.99763 * 152.17982 * 18 17 16 21 21 N 1.31619 * 119.99653 * 343.16079 * 20 18 17 22 22 Si 1.86799 * 120.00056 * 163.16209 * 20 18 17 23 23 H 1.48498 * 109.47033 * 89.99898 * 22 20 18 24 24 H 1.48497 * 109.46906 * 209.99748 * 22 20 18 25 25 H 1.48496 * 109.47329 * 330.00182 * 22 20 18 26 26 C 1.46922 * 118.73694 * 306.64373 * 17 16 15 27 27 C 1.52760 * 109.00877 * 53.30539 * 26 17 16 28 28 H 1.07999 * 120.00084 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00321 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.00084 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46737 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.46909 * 299.99401 * 4 3 2 33 33 H 1.08996 * 109.47236 * 59.99766 * 4 3 2 34 34 H 1.09001 * 109.46786 * 59.99931 * 5 3 2 35 35 H 1.08993 * 109.47557 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.47371 * 299.99376 * 6 5 3 37 37 H 1.09000 * 109.47654 * 59.99922 * 6 5 3 38 38 H 1.09001 * 109.47350 * 179.97438 * 6 5 3 39 39 H 0.97000 * 119.99761 * 0.02562 * 9 7 3 40 40 H 1.08997 * 109.46396 * 60.00368 * 10 9 7 41 41 H 1.08996 * 109.47284 * 300.00781 * 10 9 7 42 42 H 1.08996 * 109.47255 * 180.02562 * 12 11 10 43 43 H 1.09003 * 109.46872 * 300.03071 * 12 11 10 44 44 H 1.08997 * 109.47595 * 300.00270 * 14 13 12 45 45 H 1.08996 * 109.47180 * 60.00463 * 14 13 12 46 46 H 1.09008 * 109.46974 * 180.02562 * 14 13 12 47 47 H 1.09002 * 109.49976 * 58.66743 * 15 11 10 48 48 H 1.09002 * 109.49778 * 298.56830 * 15 11 10 49 49 H 1.08997 * 109.58711 * 294.84701 * 16 15 11 50 50 H 1.09004 * 109.70548 * 174.49237 * 16 15 11 51 51 H 0.97007 * 119.99830 * 179.97438 * 21 20 18 52 52 H 1.08996 * 109.58958 * 173.14351 * 26 17 16 53 53 H 1.09005 * 109.58698 * 293.56931 * 26 17 16 54 54 H 1.08996 * 109.56719 * 185.54717 * 27 26 17 55 55 H 1.09007 * 109.38352 * 65.51663 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9431 1.3862 -1.2492 6 6 3.9372 0.2232 -1.2493 7 6 2.9299 1.3848 1.2304 8 8 2.9354 0.4716 2.0285 9 7 3.6995 2.4705 1.4435 10 6 4.5414 2.5483 2.6399 11 6 5.3065 3.8732 2.6399 12 6 6.1869 3.9535 1.3912 13 8 5.3660 3.8779 0.2239 14 6 6.0940 3.9436 -1.0039 15 6 6.1863 3.9539 3.8895 16 6 6.9767 5.2660 3.8687 17 7 6.0343 6.3836 3.7211 18 6 6.0441 7.4262 4.6086 19 1 6.3832 7.2698 5.6220 20 6 5.6233 8.6858 4.2043 21 7 5.5329 8.9692 2.9222 22 14 5.1856 9.9785 5.4798 23 1 6.3972 10.7659 5.8224 24 1 4.1457 10.8845 4.9296 25 1 4.6663 9.3127 6.7013 26 6 5.0773 6.3580 2.6066 27 6 4.3119 5.0364 2.6382 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8499 -0.9353 -0.0004 31 1 1.6144 3.4119 0.0002 32 1 0.4423 2.4105 -0.8892 33 1 0.4429 2.4101 0.8908 34 1 2.3164 1.3284 -2.1392 35 1 3.4878 2.3303 -1.2495 36 1 4.5640 0.2809 -0.3594 37 1 3.3923 -0.7208 -1.2494 38 1 4.5636 0.2807 -2.1395 39 1 3.6954 3.2007 0.8050 40 1 5.2493 1.7195 2.6404 41 1 3.9145 2.4912 3.5297 42 1 6.7324 4.8971 1.3912 43 1 6.8947 3.1245 1.3918 44 1 6.6380 4.8868 -1.0538 45 1 6.7996 3.1143 -1.0528 46 1 5.3997 3.8802 -1.8419 47 1 6.8789 3.1122 3.9019 48 1 5.5580 3.9218 4.7796 49 1 7.6717 5.2607 3.0290 50 1 7.5309 5.3761 4.8009 51 1 5.2385 9.8493 2.6396 52 1 4.3767 7.1869 2.7074 53 1 5.6142 6.4435 1.6618 54 1 3.6701 4.9651 1.7602 55 1 3.7008 4.9937 3.5399 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162464373.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:58 Heat of formation + Delta-G solvation = -65.622611 kcal Electronic energy + Delta-G solvation = -32582.269423 eV Core-core repulsion = 28619.606127 eV Total energy + Delta-G solvation = -3962.663296 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.58585 -40.44132 -38.02784 -37.55789 -36.23029 -34.61795 -33.03469 -32.44775 -31.63884 -30.43063 -28.71397 -28.07730 -26.31531 -25.94712 -25.38617 -23.94087 -23.54873 -22.58624 -21.57608 -20.03138 -19.39431 -18.46103 -17.82167 -17.33614 -17.00561 -16.84194 -16.76286 -16.47900 -15.92138 -15.63104 -15.59782 -15.24390 -15.20286 -14.90444 -14.76047 -14.64686 -14.12680 -13.99828 -13.77343 -13.48259 -13.35071 -13.21318 -13.13189 -12.94935 -12.82834 -12.68620 -12.59487 -12.54436 -12.37070 -12.20908 -12.13539 -11.96812 -11.80814 -11.76271 -11.45228 -11.37079 -11.23153 -11.09251 -10.69375 -10.54080 -10.42291 -10.20311 -9.87030 -8.62811 -7.85365 -5.29128 1.36539 1.46143 1.48587 1.57437 1.76948 2.37306 2.52493 2.90929 3.29618 3.65084 3.69839 3.75939 3.77990 3.90873 3.97085 4.00516 4.16135 4.30744 4.37702 4.45785 4.46677 4.51527 4.54383 4.64672 4.65396 4.66795 4.69468 4.70590 4.74297 4.80671 4.81368 4.91361 4.93465 5.00456 5.05088 5.07207 5.10806 5.17513 5.20655 5.23710 5.26971 5.29684 5.38337 5.42942 5.52407 5.65386 5.68688 5.74522 5.82026 5.88226 6.25376 6.41705 6.80507 7.18291 7.41774 7.90103 8.40504 9.20429 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.003154 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.353669 B = 8875.198921 C = 9190.372116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.138 4.138 3 C -0.049 4.049 4 C -0.145 4.145 5 C -0.103 4.103 6 C -0.151 4.151 7 C 0.520 3.480 8 O -0.592 6.592 9 N -0.701 5.701 10 C 0.142 3.858 11 C -0.048 4.048 12 C 0.081 3.919 13 O -0.400 6.400 14 C 0.030 3.970 15 C -0.112 4.112 16 C 0.142 3.858 17 N -0.609 5.609 18 C -0.262 4.262 19 H 0.064 0.936 20 C -0.048 4.048 21 N -0.930 5.930 22 Si 0.961 3.039 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.274 1.274 26 C 0.186 3.814 27 C -0.110 4.110 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.032 0.968 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.416 0.584 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.044 0.956 43 H 0.059 0.941 44 H 0.033 0.967 45 H 0.049 0.951 46 H 0.105 0.895 47 H 0.087 0.913 48 H 0.062 0.938 49 H 0.022 0.978 50 H 0.054 0.946 51 H 0.249 0.751 52 H 0.047 0.953 53 H 0.004 0.996 54 H 0.066 0.934 55 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.675 -15.987 -11.752 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.156 4.156 3 C -0.052 4.052 4 C -0.202 4.202 5 C -0.141 4.141 6 C -0.208 4.208 7 C 0.307 3.693 8 O -0.473 6.473 9 N -0.358 5.358 10 C 0.017 3.983 11 C -0.049 4.049 12 C 0.004 3.996 13 O -0.319 6.319 14 C -0.066 4.066 15 C -0.151 4.151 16 C 0.016 3.984 17 N -0.333 5.333 18 C -0.392 4.392 19 H 0.081 0.919 20 C -0.244 4.244 21 N -0.577 5.577 22 Si 0.790 3.210 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.199 1.199 26 C 0.060 3.940 27 C -0.149 4.149 28 H 0.131 0.869 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.259 0.741 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.052 0.948 45 H 0.068 0.932 46 H 0.123 0.877 47 H 0.106 0.894 48 H 0.080 0.920 49 H 0.039 0.961 50 H 0.072 0.928 51 H 0.058 0.942 52 H 0.065 0.935 53 H 0.022 0.978 54 H 0.084 0.916 55 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.876 -16.449 -11.253 20.517 hybrid contribution 0.308 1.388 0.584 1.537 sum -4.568 -15.061 -10.669 19.014 Atomic orbital electron populations 1.24147 0.95526 1.03171 0.99773 1.22516 0.96020 0.96490 1.00611 1.19959 0.95559 0.96192 0.93462 1.21978 0.98672 0.96056 1.03495 1.21573 0.97110 0.99847 0.95535 1.21787 0.99008 0.98551 1.01462 1.20917 0.79745 0.81358 0.87285 1.90632 1.68178 1.39652 1.48866 1.46274 1.43076 1.21265 1.25149 1.21203 0.93072 0.96241 0.87770 1.20640 0.95622 0.93896 0.94743 1.22537 0.92690 1.00153 0.84197 1.87444 1.35171 1.94793 1.14460 1.22867 0.97758 1.00049 0.85920 1.21881 0.98736 0.98512 0.96010 1.21062 0.91309 0.87196 0.98810 1.44286 1.36768 1.20871 1.31369 1.19475 1.39968 0.88022 0.91729 0.91851 1.25705 1.02706 0.98660 0.97281 1.70171 1.51658 1.21077 1.14755 0.85376 0.77450 0.79123 0.79087 1.21231 1.21944 1.19866 1.20409 0.91055 0.94167 0.88337 1.21870 0.97299 0.95385 1.00347 0.86933 0.87298 0.87880 0.91601 0.88883 0.92637 0.88957 0.90450 0.94926 0.92543 0.90899 0.74077 0.91851 0.93057 0.93821 0.92260 0.94829 0.93218 0.87713 0.89449 0.91954 0.96058 0.92752 0.94233 0.93499 0.97814 0.91592 0.93880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.32 13.70 67.79 0.93 -2.39 16 2 C -0.14 -2.90 7.29 25.65 0.19 -2.71 16 3 C -0.05 -1.01 0.63 -53.67 -0.03 -1.05 16 4 C -0.14 -2.59 7.02 71.98 0.51 -2.09 16 5 C -0.10 -1.70 4.88 30.59 0.15 -1.55 16 6 C -0.15 -2.66 9.41 71.98 0.68 -1.98 16 7 C 0.52 14.63 5.21 87.66 0.46 15.09 16 8 O -0.59 -21.23 16.03 -3.02 -0.05 -21.28 16 9 N -0.70 -18.83 4.39 -463.08 -2.03 -20.86 16 10 C 0.14 4.09 4.56 86.38 0.39 4.48 16 11 C -0.05 -1.47 0.51 -52.16 -0.03 -1.50 16 12 C 0.08 2.27 4.04 71.98 0.29 2.56 16 13 O -0.40 -10.00 6.77 -148.98 -1.01 -11.01 16 14 C 0.03 0.58 11.01 113.37 1.25 1.83 16 15 C -0.11 -3.49 4.90 30.67 0.15 -3.34 16 16 C 0.14 5.50 6.05 86.36 0.52 6.02 16 17 N -0.61 -29.52 3.00 -699.92 -2.10 -31.62 16 18 C -0.26 -14.18 9.58 84.04 0.81 -13.37 16 19 H 0.06 3.37 7.88 -2.91 -0.02 3.35 16 20 C -0.05 -2.65 4.92 84.86 0.42 -2.23 16 21 N -0.93 -54.03 11.18 21.65 0.24 -53.78 16 22 Si 0.96 44.63 29.59 68.60 2.03 46.66 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 26 C 0.19 8.61 4.81 86.22 0.41 9.02 16 27 C -0.11 -4.01 4.58 30.53 0.14 -3.87 16 28 H 0.11 1.72 5.69 -2.91 -0.02 1.71 16 29 H 0.11 1.62 8.06 -2.91 -0.02 1.59 16 30 H 0.10 2.32 7.00 -2.91 -0.02 2.30 16 31 H 0.06 1.19 7.57 -2.38 -0.02 1.17 16 32 H 0.09 1.22 7.50 -2.39 -0.02 1.21 16 33 H 0.05 1.09 7.50 -2.39 -0.02 1.07 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.25 7.56 -2.39 -0.02 1.23 16 36 H 0.03 0.72 7.22 -2.39 -0.02 0.70 16 37 H 0.06 0.99 6.62 -2.39 -0.02 0.98 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.42 10.55 3.52 -92.71 -0.33 10.22 16 40 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.04 1.48 4.99 -2.39 -0.01 1.46 16 43 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 47 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.02 0.82 6.69 -2.39 -0.02 0.81 16 50 H 0.05 2.09 7.93 -2.39 -0.02 2.08 16 51 H 0.25 14.04 8.31 -92.70 -0.77 13.27 16 52 H 0.05 2.53 6.05 -2.39 -0.01 2.52 16 53 H 0.00 0.19 6.70 -2.38 -0.02 0.17 16 54 H 0.07 2.22 6.49 -2.39 -0.02 2.21 16 55 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -66.81 408.24 4.84 -61.98 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 0.53 Total: 26.99 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 7.23 Total: 2.93 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -3.89 Total: -106.27 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -1.06 Total: -32.29 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -66.81 4.84 -61.98 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162464373.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.646 kcal (2) G-P(sol) polarization free energy of solvation -66.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds