Wall clock time and date at job start Tue Mar 31 2020 23:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46886 * 180.02562 * 5 4 3 7 7 O 1.42898 * 109.47145 * 179.97438 * 6 5 4 8 8 C 1.42902 * 114.00186 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47205 * 179.97438 * 8 7 6 10 10 O 1.21285 * 120.00147 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99971 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00265 * 180.02562 * 11 9 8 13 13 H 1.09006 * 112.88217 * 23.65282 * 12 11 9 14 14 C 1.53950 * 113.66599 * 252.18797 * 12 11 9 15 15 C 1.53945 * 87.29740 * 220.79354 * 14 12 11 16 16 H 1.09001 * 113.66532 * 139.20173 * 15 14 12 17 17 N 1.46504 * 113.74371 * 270.24454 * 15 14 12 18 18 C 1.36936 * 120.00276 * 252.22756 * 17 15 14 19 19 H 1.07999 * 119.99262 * 0.02562 * 18 17 15 20 20 C 1.38807 * 120.00096 * 180.02562 * 18 17 15 21 21 N 1.31618 * 119.99928 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99892 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47497 * 359.97438 * 22 20 18 24 24 H 1.48507 * 109.47201 * 119.99789 * 22 20 18 25 25 H 1.48499 * 109.47028 * 239.99508 * 22 20 18 26 26 C 1.52912 * 113.66551 * 154.99674 * 12 11 9 27 27 C 1.52910 * 121.13611 * 13.65421 * 26 12 11 28 28 C 1.53954 * 86.77837 * 209.37904 * 27 26 12 29 29 C 1.52907 * 121.13874 * 265.08921 * 26 12 11 30 30 H 1.09002 * 109.47153 * 300.00216 * 1 2 3 31 31 H 1.09001 * 109.47289 * 60.00300 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47153 * 239.99783 * 2 1 3 34 34 H 1.09001 * 109.46832 * 119.99974 * 2 1 3 35 35 H 1.09002 * 109.47103 * 59.99753 * 3 2 1 36 36 H 1.08998 * 109.46862 * 300.00565 * 3 2 1 37 37 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 38 38 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 39 39 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 40 40 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 41 41 H 1.09001 * 109.47109 * 299.99380 * 6 5 4 42 42 H 1.09002 * 109.47508 * 59.99571 * 6 5 4 43 43 H 1.09001 * 109.46918 * 299.99649 * 8 7 6 44 44 H 1.09000 * 109.47330 * 59.99777 * 8 7 6 45 45 H 0.97003 * 119.99916 * 359.97438 * 11 9 8 46 46 H 1.09008 * 113.57442 * 335.39995 * 14 12 11 47 47 H 1.08999 * 113.58005 * 106.18324 * 14 12 11 48 48 H 0.97002 * 119.99734 * 72.23274 * 17 15 14 49 49 H 0.97001 * 119.99990 * 180.02562 * 21 20 18 50 50 H 1.08998 * 113.65807 * 323.85157 * 27 26 12 51 51 H 1.08995 * 113.65834 * 94.90715 * 27 26 12 52 52 H 1.08991 * 113.57725 * 270.12467 * 28 27 26 53 53 H 1.09000 * 113.57172 * 139.33771 * 28 27 26 54 54 H 1.08998 * 113.66379 * 265.09753 * 29 26 12 55 55 H 1.09006 * 113.65967 * 36.05477 * 29 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0013 6 6 5.6100 2.8849 0.0013 7 8 6.0864 4.2321 0.0013 8 6 7.5109 4.3449 0.0019 9 6 7.8995 5.8009 0.0012 10 8 7.0411 6.6577 0.0008 11 7 9.2010 6.1510 0.0010 12 6 9.5789 7.5665 0.0009 13 1 8.7994 8.2133 0.4039 14 6 10.1548 8.0522 -1.3416 15 6 11.1888 8.8497 -0.5262 16 1 12.1938 8.8217 -0.9472 17 7 10.7518 10.2057 -0.1846 18 6 11.3164 11.2851 -0.8102 19 1 12.0836 11.1366 -1.5557 20 6 10.9028 12.5698 -0.4861 21 7 9.9674 12.7506 0.4221 22 14 11.6725 14.0421 -1.3400 23 1 12.6919 13.5731 -2.3128 24 1 10.6190 14.8059 -2.0558 25 1 12.3189 14.9180 -0.3299 26 6 10.9635 7.8322 0.5928 27 6 11.9523 6.6911 0.8346 28 6 12.5115 7.5370 1.9929 29 6 11.1343 8.2214 2.0616 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9562 -0.8899 37 1 3.9337 0.9284 -0.8891 38 1 3.9329 0.9287 0.8909 39 1 3.7171 3.3990 -0.8887 40 1 3.7163 3.3985 0.8912 41 1 5.9733 2.3707 0.8911 42 1 5.9734 2.3713 -0.8889 43 1 7.9133 3.8616 0.8922 44 1 7.9141 3.8612 -0.8878 45 1 9.8876 5.4658 0.0018 46 1 10.5937 7.2550 -1.9417 47 1 9.4682 8.6806 -1.9088 48 1 10.0625 10.3389 0.4848 49 1 9.6781 13.6484 0.6483 50 1 11.4794 5.7639 1.1585 51 1 12.6596 6.5449 0.0183 52 1 13.3171 8.2074 1.6938 53 1 12.7534 6.9538 2.8814 54 1 11.1882 9.2976 2.2255 55 1 10.4305 7.7255 2.7302 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203659979.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:29 Heat of formation + Delta-G solvation = -74.789560 kcal Electronic energy + Delta-G solvation = -28996.916734 eV Core-core repulsion = 25033.855930 eV Total energy + Delta-G solvation = -3963.060804 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.90791 -40.32508 -38.73574 -37.02502 -36.48511 -35.63214 -34.09519 -33.69690 -31.68793 -29.85204 -28.27624 -26.74220 -26.13111 -25.47699 -24.66235 -24.06737 -22.19512 -21.86095 -21.69046 -21.52437 -19.53479 -18.86876 -18.16422 -17.83179 -17.53540 -16.86227 -16.65847 -16.62886 -16.22627 -16.01492 -15.72070 -15.56221 -15.02190 -14.74943 -14.70813 -14.31062 -14.03212 -13.90770 -13.79089 -13.57802 -13.39416 -13.28827 -13.10339 -12.85451 -12.78793 -12.68550 -12.59442 -12.46828 -12.21912 -12.15555 -11.97233 -11.79111 -11.78010 -11.70021 -11.46918 -11.35775 -11.33292 -11.22647 -10.91375 -10.79290 -10.68477 -10.64162 -9.88220 -9.02043 -7.95898 -5.25199 1.45876 1.47185 1.57129 1.58804 1.85150 2.53779 2.98164 3.35916 3.42575 3.55823 3.73086 3.81750 3.94972 3.95990 3.97226 4.04162 4.11156 4.18478 4.19414 4.20596 4.23476 4.33035 4.38554 4.47493 4.53949 4.58443 4.63036 4.66002 4.79993 4.80907 4.85893 4.87762 4.90062 4.92615 5.05684 5.08139 5.09182 5.12832 5.15550 5.21095 5.24141 5.25873 5.32646 5.36965 5.44239 5.47032 5.52129 5.52744 5.61884 5.74333 6.14204 6.25938 6.63444 7.30805 7.30984 8.07291 8.29337 9.27786 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016992 B = 0.001695 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.474350 B =16519.319776 C =17624.360104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.122 4.122 4 C -0.108 4.108 5 C -0.121 4.121 6 C 0.057 3.943 7 O -0.406 6.406 8 C 0.052 3.948 9 C 0.500 3.500 10 O -0.586 6.586 11 N -0.693 5.693 12 C 0.147 3.853 13 H 0.063 0.937 14 C -0.171 4.171 15 C 0.178 3.822 16 H 0.076 0.924 17 N -0.716 5.716 18 C -0.240 4.240 19 H 0.082 0.918 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.974 3.026 23 H -0.261 1.261 24 H -0.298 1.298 25 H -0.293 1.293 26 C -0.114 4.114 27 C -0.092 4.092 28 C -0.125 4.125 29 C -0.137 4.137 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.419 0.581 46 H 0.107 0.893 47 H 0.033 0.967 48 H 0.371 0.629 49 H 0.250 0.750 50 H 0.110 0.890 51 H 0.088 0.912 52 H 0.069 0.931 53 H 0.086 0.914 54 H 0.038 0.962 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.677 -32.399 0.484 32.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.160 4.160 4 C -0.145 4.145 5 C -0.159 4.159 6 C -0.019 4.019 7 O -0.325 6.325 8 C -0.028 4.028 9 C 0.287 3.713 10 O -0.465 6.465 11 N -0.347 5.347 12 C 0.042 3.958 13 H 0.082 0.918 14 C -0.213 4.213 15 C 0.067 3.933 16 H 0.094 0.906 17 N -0.352 5.352 18 C -0.371 4.371 19 H 0.100 0.900 20 C -0.269 4.269 21 N -0.622 5.622 22 Si 0.803 3.197 23 H -0.185 1.185 24 H -0.226 1.226 25 H -0.221 1.221 26 C -0.116 4.116 27 C -0.130 4.130 28 C -0.163 4.163 29 C -0.175 4.175 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.258 0.742 46 H 0.126 0.874 47 H 0.052 0.948 48 H 0.203 0.797 49 H 0.058 0.942 50 H 0.128 0.872 51 H 0.107 0.893 52 H 0.088 0.912 53 H 0.104 0.896 54 H 0.057 0.943 55 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.286 -31.528 0.363 31.971 hybrid contribution -0.141 1.469 -0.071 1.478 sum -5.427 -30.059 0.292 30.547 Atomic orbital electron populations 1.21802 0.95947 1.01897 1.01687 1.21521 0.95880 0.96272 1.02375 1.21619 0.95213 0.97305 1.01853 1.21457 0.95504 0.94429 1.03128 1.21541 0.93633 0.98352 1.02331 1.22784 0.95209 0.81946 1.01915 1.87994 1.20003 1.28686 1.95812 1.22324 0.83307 0.91521 1.05600 1.21227 0.82732 0.92017 0.75287 1.90745 1.51203 1.53973 1.50540 1.45663 1.06698 1.08073 1.74252 1.21898 0.95071 0.81608 0.97256 0.91844 1.24182 0.99986 1.00327 0.96788 1.20918 0.95959 0.83074 0.93379 0.90642 1.42266 1.45561 1.00486 1.46902 1.19736 1.15493 0.86061 1.15851 0.90002 1.25596 1.00242 1.00406 1.00659 1.69855 1.34355 1.21073 1.36919 0.85058 0.77506 0.79437 0.77667 1.18524 1.22554 1.22067 1.23475 0.94172 0.98788 0.95192 1.22568 0.96219 0.95527 0.98660 1.22690 0.95380 0.98654 0.99528 1.22682 0.98956 0.99955 0.95859 0.92974 0.92977 0.92199 0.91616 0.91604 0.92456 0.92467 0.90812 0.90793 0.92484 0.92441 0.91273 0.91327 0.86827 0.86913 0.74210 0.87431 0.94766 0.79724 0.94155 0.87196 0.89314 0.91244 0.89571 0.94265 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.91 71.98 0.71 -0.77 16 2 C -0.12 -1.15 5.93 30.59 0.18 -0.97 16 3 C -0.12 -1.40 5.21 30.59 0.16 -1.24 16 4 C -0.11 -1.14 5.21 30.59 0.16 -0.98 16 5 C -0.12 -1.92 5.58 30.59 0.17 -1.75 16 6 C 0.06 0.86 5.94 71.98 0.43 1.29 16 7 O -0.41 -9.99 9.88 -129.94 -1.28 -11.27 16 8 C 0.05 0.93 6.42 71.24 0.46 1.39 16 9 C 0.50 14.56 7.91 87.66 0.69 15.25 16 10 O -0.59 -25.26 16.10 15.99 0.26 -25.00 16 11 N -0.69 -16.79 5.25 -441.14 -2.32 -19.11 16 12 C 0.15 4.95 4.04 45.28 0.18 5.14 16 13 H 0.06 2.83 7.46 -2.38 -0.02 2.82 16 14 C -0.17 -6.02 7.68 31.23 0.24 -5.78 16 15 C 0.18 6.88 4.36 45.28 0.20 7.08 16 16 H 0.08 2.79 8.10 -2.39 -0.02 2.77 16 17 N -0.72 -36.76 4.86 -321.56 -1.56 -38.32 16 18 C -0.24 -13.45 9.97 84.03 0.84 -12.61 16 19 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 20 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 21 N -0.97 -61.66 13.06 21.65 0.28 -61.37 16 22 Si 0.97 47.10 29.55 68.60 2.03 49.13 16 23 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 25 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 26 C -0.11 -3.44 0.92 -52.31 -0.05 -3.49 16 27 C -0.09 -1.79 7.15 30.89 0.22 -1.57 16 28 C -0.13 -2.96 8.08 31.23 0.25 -2.71 16 29 C -0.14 -4.36 7.62 30.88 0.24 -4.12 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.42 6.07 7.03 -92.71 -0.65 5.42 16 46 H 0.11 2.95 8.14 -2.38 -0.02 2.93 16 47 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.37 21.17 7.61 -92.71 -0.71 20.47 16 49 H 0.25 15.39 8.31 -92.71 -0.77 14.61 16 50 H 0.11 1.44 7.03 -2.39 -0.02 1.42 16 51 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 52 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 53 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 54 H 0.04 1.59 7.58 -2.39 -0.02 1.57 16 55 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -80.43 439.39 2.44 -77.99 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: -0.51 Total: 37.86 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 5.55 Total: -9.90 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -3.59 Total: -118.80 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -1.03 Total: -36.28 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -80.43 2.44 -77.99 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203659979.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.196 kcal (2) G-P(sol) polarization free energy of solvation -80.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds